1SHO - JenaLib

Title :   CRYSTAL STRUCTURE OF VANCOMYCIN AT ATOMIC RESOLUTION

Authors :   G. M. Sheldrick

Date :   23 Jul 97 (Deposition) - 24 Dec 97 (Release) - 27 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.09

Chains :   Asym./Biol. Unit : A,B

Keywords :   Glycopeptide, Antibiotic (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Schafer, T. R. Schneider, G. M. Sheldrick
Crystal Structure Of Vancomycin.
Structure V. 4 1509 1996
PubMed-ID: 8994975 | Reference-DOI: 10.1016/S0969-2126(96)00156-6

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (9, 19)

Asymmetric/Biological Unit (9, 19)

No.	Name	Count	Type	Full Name
1	3FG	2	Mod. Amino Acid	(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC ACID
2	ACT	1	Ligand/Ion	ACETATE ION
3	BGC	2	Ligand/Ion	BETA-D-GLUCOSE
4	CL	2	Ligand/Ion	CHLORIDE ION
5	GHP	4	Mod. Amino Acid	(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
6	MLU	2	Mod. Amino Acid	N-METHYLLEUCINE
7	OMY	2	Mod. Amino Acid	(BETAR)-3-CHLORO-BETA-HYDROXY-L-TYROSINE
8	OMZ	2	Mod. Amino Acid	(BETAR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE
9	RER	2	Ligand/Ion	(1R,3S,4S,5S)-3-AMINO-2,3,6-TRIDEOXY-3-METHYL-ALPHA-L-ARABINO-HEXOPYRANOSE

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MLU B:1 , OMZ B:2 , ASN B:3 , GHP B:4 , HOH B:2005 , HOH B:2048	BINDING SITE FOR RESIDUE ACT B 10
2	AC2	SOFTWARE	ASN A:3 , GHP A:5 , OMY A:6 , 3FG A:7 , HOH A:2044 , OMZ B:2	BINDING SITE FOR RESIDUE CL B 11
3	AC3	SOFTWARE	OMZ A:2 , RER A:9 , HOH A:2059 , MLU B:1 , RER B:9	BINDING SITE FOR RESIDUE CL B 12
4	AC4	SOFTWARE	HOH A:2001 , HOH A:2002 , HOH A:2013 , HOH A:2015 , HOH A:2035 , HOH A:2036 , HOH A:2037 , HOH A:2038 , HOH A:2039 , HOH A:2040 , HOH A:2041 , HOH A:2042 , HOH A:2043 , HOH A:2044 , HOH A:2045 , HOH A:2046 , HOH A:2049 , HOH A:2050 , HOH A:2051 , HOH A:2052 , HOH A:2054 , HOH A:2055 , HOH A:2056 , HOH A:2057 , HOH A:2058 , HOH A:2059 , HOH A:2060 , MLU B:1 , OMZ B:2 , ASN B:3 , GHP B:4 , GHP B:5 , OMY B:6 , 3FG B:7 , BGC B:8 , RER B:9 , CL B:11 , CL B:12 , HOH B:2001 , HOH B:2024	BINDING SITE FOR CHAIN A OF VANCOMYCIN
5	AC5	SOFTWARE	MLU A:1 , OMZ A:2 , ASN A:3 , GHP A:4 , GHP A:5 , OMY A:6 , 3FG A:7 , BGC A:8 , RER A:9 , HOH A:2002 , HOH A:2040 , HOH A:2050 , HOH A:2055 , ACT B:10 , CL B:11 , CL B:12 , HOH B:2001 , HOH B:2008 , HOH B:2022 , HOH B:2024 , HOH B:2025 , HOH B:2026 , HOH B:2027 , HOH B:2028 , HOH B:2030 , HOH B:2031 , HOH B:2033 , HOH B:2035 , HOH B:2036 , HOH B:2037 , HOH B:2038 , HOH B:2039 , HOH B:2041 , HOH B:2042 , HOH B:2043 , HOH B:2044 , HOH B:2045	BINDING SITE FOR CHAIN B OF VANCOMYCIN

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
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Chain A from PDB  Type:PROTEIN  Length:7
                                     
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                   1sho A 1 xxNxxxx 7
                            || ||||
                            || ||||
                            1-MLU||
                             2-OMZ|
                               4-GHP
                                5-GHP
                                 6-OMY
                                  7-3FG

Chain B from PDB  Type:PROTEIN  Length:7
                                     
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                   1sho B 1 xxNxxxx 7
                            || ||||
                            || ||||
                            1-MLU||
                             2-OMZ|
                               4-GHP
                                5-GHP
                                 6-OMY
                                  7-3FG

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

1aa5	CRYSTAL STRUCTURE OF VANCOMYCIN
1c0q	CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH 2-ACETOXY-D- PROPANOIC ACID
1c0r	CRYSTAL STRUCTURE OF VANCOMYCIN WITH D-LACTIC ACID
1fvm	CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH DI-ACETYL- LYS-D-ALA-D-ALA
1gac	SOLUTION STRUCTURE OF A82846B COMPLEXED WITH ITS CELL WALL PENTAPEPTIDE FRAGMENT
1ghg	CRYSTAL STRUCTURE OF VANCOMYCIN AGLYCON
1pn3	CRYSTAL STRUCTURE OF TDP-EPI-VANCOSAMINYLTRANSFERASE GTFA COMPLEXD WITH TDP AND DESVANCOSAMINYL VANCOMYCIN
1pnv	CRYSTAL STRUCTURE OF TDP-EPI-VANCOSAMINYLTRANSFERASE GTFA COMPLEXED WITH TDP AND VANCOMYCIN
1qd8	CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH N-ACETYL GLYCIN
1rrv	CRYSTAL STRUCTURE OF TDP-VANCOSAMINYLTRANSFERASE GTFD COMPLEXED WITH TDP AND DESVANCOSAMINYL VANCOMYCIN.

Description