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(-) Description

Title :  STRUCTURE OF AN ALBUMIN-BINDING DOMAIN, NMR, 20 STRUCTURES
 
Authors :  M. U. Johansson, M. De Chateau, M. Wikstrom, S. Forsen, T. Drakenberg, L. Bjorck
Date :  30 Dec 96  (Deposition) - 07 Jul 97  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Albumin-Binding Protein, Bacterial Surface Proteins, Evolution, Module Shuffling (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. U. Johansson, M. De Chateau, M. Wikstrom, S. Forsen, T. Drakenberg, L. Bjorck
Solution Structure Of The Albumin-Binding Ga Module: A Versatile Bacterial Protein Domain.
J. Mol. Biol. V. 266 859 1997
PubMed-ID: 9086265  |  Reference-DOI: 10.1006/JMBI.1996.0856
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN PAB
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: BACTERIAL
    Fragment: ALBUMIN-BINDING DOMAIN, RESIDUES 213 - 265
    Organism Scientific: FINEGOLDIA MAGNA ATCC 29328
    Organism Taxid: 334413
    Strain: ALB8
    Synonym: GA MODULE

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1GAB)

(-) Sites  (0, 0)

(no "Site" information available for 1GAB)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GAB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1GAB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GAB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1GAB)

(-) Exons   (0, 0)

(no "Exon" information available for 1GAB)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:53
 aligned with PAB_FINMA | Q51911 from UniProtKB/Swiss-Prot  Length:387

    Alignment length:53
                                   222       232       242       252       262   
            PAB_FINMA   213 TIDQWLLKNAKEDAIAELKKAGITSDFYFNAINKAKTVEEVNALKNEILKAHA 265
               SCOP domains d1gaba_ A: PAB                                        SCOP domains
               CATH domains 1gabA00 A:1-53 Albumin-binding domain                 CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhh.......hhhhhhhhh...hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                 1gab A   1 TIDQWLLKNAKEDAIAELKKAGITSDFYFNAINKAKTVEEVNALKNEILKAHA  53
                                    10        20        30        40        50
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GAB)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (PAB_FINMA | Q51911)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005618    cell wall    The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAB_FINMA | Q51911: 1prb 1tf0 2j5y 2vdb

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