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(-) Description

Title :  THE CRYSTAL STRUCTURE OF DTDP-D-GLUCOSE 4,6-DEHYDRATASE (RMLB)FROM SALMONELLA ENTERICA SEROVAR TYPHIMURIUM
 
Authors :  S. T. M. Allard, M. -F. Giraud, C. Whitfield, M. Graninger, P. Messner, J. H. Naismith
Date :  11 Oct 00  (Deposition) - 21 Mar 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.47
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Rossmann Fold, Protein-Nad Complex, Short Chain Dehydrogenase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. T. Allard, M. F. Giraud, C. Whitfield, M. Graninger, P. Messner, J. H. Naismith
The Crystal Structure Of Dtdp-D-Glucose 4, 6-Dehydratase (Rmlb) From Salmonella Enterica Serovar Typhimurium, The Second Enzyme In The Dtdp-L-Rhamnose Pathway.
J. Mol. Biol. V. 307 283 2001
PubMed-ID: 11243820  |  Reference-DOI: 10.1006/JMBI.2000.4470
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DTDP-D-GLUCOSE 4,6-DEHYDRATASE
    Chains: A, B, C, D
    EC Number: 4.2.1.46
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A(+)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RMLB
    Organism Scientific: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
    Organism Taxid: 90371
    Strain: SUBSP. ENTERICA SEROVAR TYPHIMURIUM
    Variant: SEROVAR TYPHIMURIUM

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric Unit (2, 13)
No.NameCountTypeFull Name
1NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
2SO49Ligand/IonSULFATE ION
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
2SO45Ligand/IonSULFATE ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
2SO44Ligand/IonSULFATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:202 , LYS A:206 , NAD A:400 , HOH A:5097BINDING SITE FOR RESIDUE SO4 A 5001
02AC2SOFTWAREHIS B:202 , LYS B:206 , NAD B:500 , HOH B:5063 , HOH B:5066 , HOH B:5100 , HOH B:5171BINDING SITE FOR RESIDUE SO4 B 5002
03AC3SOFTWAREHIS C:202 , LYS C:206 , NAD C:600 , HOH C:5094BINDING SITE FOR RESIDUE SO4 C 5003
04AC4SOFTWAREHIS D:202 , LYS D:206 , NAD D:700 , HOH D:5093 , HOH D:5118 , HOH D:5124BINDING SITE FOR RESIDUE SO4 D 5004
05AC5SOFTWARETHR A:159 , ALA A:160BINDING SITE FOR RESIDUE SO4 A 5005
06AC6SOFTWARETHR B:159 , ALA B:160 , HOH B:5138BINDING SITE FOR RESIDUE SO4 B 5006
07AC7SOFTWARETHR C:159 , ALA C:160BINDING SITE FOR RESIDUE SO4 C 5007
08AC8SOFTWARETHR D:159 , ALA D:160 , HOH D:5031BINDING SITE FOR RESIDUE SO4 D 5008
09AC9SOFTWARELYS B:264 , THR B:322 , PHE B:323 , GLU B:324 , HOH B:5116BINDING SITE FOR RESIDUE SO4 B 5009
10BC1SOFTWAREGLY A:7 , ALA A:9 , GLY A:10 , PHE A:11 , ILE A:12 , ASP A:32 , LYS A:33 , LEU A:34 , THR A:35 , ALA A:37 , GLY A:38 , ALA A:57 , ASP A:58 , ILE A:59 , LEU A:80 , ALA A:82 , THR A:99 , ILE A:131 , SER A:132 , THR A:133 , TYR A:167 , LYS A:171 , CYS A:194 , SER A:195 , ASN A:197 , SO4 A:5001 , HOH A:5010 , HOH A:5013 , HOH A:5014 , HOH A:5020 , HOH A:5031 , HOH A:5060 , HOH A:5098BINDING SITE FOR RESIDUE NAD A 400
11BC2SOFTWAREGLY B:7 , ALA B:9 , GLY B:10 , PHE B:11 , ILE B:12 , ASP B:32 , LYS B:33 , LEU B:34 , THR B:35 , ALA B:37 , GLY B:38 , ALA B:57 , ASP B:58 , ILE B:59 , LEU B:80 , ALA B:81 , ALA B:82 , THR B:99 , ILE B:131 , SER B:132 , THR B:133 , TYR B:167 , LYS B:171 , CYS B:194 , SER B:195 , ASN B:196 , ASN B:197 , SO4 B:5002 , HOH B:5019 , HOH B:5025 , HOH B:5045 , HOH B:5063 , HOH B:5073BINDING SITE FOR RESIDUE NAD B 500
12BC3SOFTWAREGLY C:7 , ALA C:9 , GLY C:10 , PHE C:11 , ILE C:12 , ASP C:32 , LYS C:33 , LEU C:34 , THR C:35 , ALA C:37 , GLY C:38 , ALA C:57 , ASP C:58 , ILE C:59 , LEU C:80 , ALA C:81 , ALA C:82 , THR C:99 , ILE C:131 , SER C:132 , THR C:133 , TYR C:167 , LYS C:171 , CYS C:194 , SER C:195 , ASN C:197 , SO4 C:5003 , HOH C:5026 , HOH C:5034 , HOH C:5045 , HOH C:5052 , HOH C:5058 , HOH C:5081 , HOH C:5094BINDING SITE FOR RESIDUE NAD C 600
13BC4SOFTWAREGLY D:7 , ALA D:9 , GLY D:10 , PHE D:11 , ILE D:12 , ASP D:32 , LYS D:33 , LEU D:34 , THR D:35 , ALA D:37 , GLY D:38 , ALA D:57 , ASP D:58 , ILE D:59 , LEU D:80 , ALA D:81 , ALA D:82 , THR D:99 , ILE D:131 , SER D:132 , THR D:133 , TYR D:167 , LYS D:171 , CYS D:194 , SER D:195 , ASN D:197 , SO4 D:5004 , HOH D:5012 , HOH D:5019 , HOH D:5025 , HOH D:5027 , HOH D:5049 , HOH D:5055 , HOH D:5093 , HOH D:5124BINDING SITE FOR RESIDUE NAD D 700

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1G1A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1G1A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1G1A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1G1A)

(-) Exons   (0, 0)

(no "Exon" information available for 1G1A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:352
 aligned with Q9EU31_SALCE | Q9EU31 from UniProtKB/TrEMBL  Length:361

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
         Q9EU31_SALCE     1 MQILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSW 352
               SCOP domains d1g1aa_ A: dTDP-glucose 4,6-dehydratase (RmlB)                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1g1aA01 A:1-203,A:231-264,A:303-324 NAD(P)-binding Rossmann-like Domain                                                                                                                                    1g1aA02                    1g1aA01                           1g1aA02                      ---------1g1aA01               1g1aA02                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhh..eeeee.......hhhhhh.......eeee.....hhhhhhhhhhhhh..eeee..............hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeee.hhhh..........................hhhhhhhhhhhhhhhhhhhhhh..eeeeee.eee.......hhhhhhhhhhhh...eee......ee.eeehhhhhhhhhhhhhhh....eeee.....eehhhhhhhhhhhhhhh.....hhhh.eee..............hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g1a A   1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSW 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  


Chain A from PDB  Type:PROTEIN  Length:352
 aligned with RMLB_SALTY | P26391 from UniProtKB/Swiss-Prot  Length:361

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
           RMLB_SALTY     1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSW 352
               SCOP domains d1g1aa_ A: dTDP-glucose 4,6-dehydratase (RmlB)                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1g1aA01 A:1-203,A:231-264,A:303-324 NAD(P)-binding Rossmann-like Domain                                                                                                                                    1g1aA02                    1g1aA01                           1g1aA02                      ---------1g1aA01               1g1aA02                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhh..eeeee.......hhhhhh.......eeee.....hhhhhhhhhhhhh..eeee..............hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeee.hhhh..........................hhhhhhhhhhhhhhhhhhhhhh..eeeeee.eee.......hhhhhhhhhhhh...eee......ee.eeehhhhhhhhhhhhhhh....eeee.....eehhhhhhhhhhhhhhh.....hhhh.eee..............hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g1a A   1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSW 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  


Chain B from PDB  Type:PROTEIN  Length:352
 aligned with Q9EU31_SALCE | Q9EU31 from UniProtKB/TrEMBL  Length:361

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
         Q9EU31_SALCE     1 MQILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSW 352
               SCOP domains d1g1ab_ B: dTDP-glucose 4,6-dehydratase (RmlB)                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1g1aB01 B:1-203,B:231-264,B:303-324 NAD(P)-binding Rossmann-like Domain                                                                                                                                    1g1aB02                    1g1aB01                           1g1aB02                      ---------1g1aB01               1g1aB02                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhh..eeeee.......hhhhhh.......eeee.....hhhhhhhhhhhhh..eeee..............hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeee.hhhh..........................hhhhhhhhhhhhhhhhhhhhhh..eeeeee.eee.......hhhhhhhhhhhh...eeee.....ee.eeehhhhhhhhhhhhhhh....eeee.....eehhhhhhhhhhhhhhh.....hhhh.eeee.............hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g1a B   1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSW 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  


Chain B from PDB  Type:PROTEIN  Length:352
 aligned with RMLB_SALTY | P26391 from UniProtKB/Swiss-Prot  Length:361

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
           RMLB_SALTY     1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSW 352
               SCOP domains d1g1ab_ B: dTDP-glucose 4,6-dehydratase (RmlB)                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1g1aB01 B:1-203,B:231-264,B:303-324 NAD(P)-binding Rossmann-like Domain                                                                                                                                    1g1aB02                    1g1aB01                           1g1aB02                      ---------1g1aB01               1g1aB02                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhh..eeeee.......hhhhhh.......eeee.....hhhhhhhhhhhhh..eeee..............hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeee.hhhh..........................hhhhhhhhhhhhhhhhhhhhhh..eeeeee.eee.......hhhhhhhhhhhh...eeee.....ee.eeehhhhhhhhhhhhhhh....eeee.....eehhhhhhhhhhhhhhh.....hhhh.eeee.............hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g1a B   1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSW 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  


Chain C from PDB  Type:PROTEIN  Length:352
 aligned with Q9EU31_SALCE | Q9EU31 from UniProtKB/TrEMBL  Length:361

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
         Q9EU31_SALCE     1 MQILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSW 352
               SCOP domains d1g1ac_ C: dTDP-glucose 4,6-dehydratase (RmlB)                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1g1aC01 C:1-203,C:231-264,C:303-324 NAD(P)-binding Rossmann-like Domain                                                                                                                                    1g1aC02                    1g1aC01                           1g1aC02                      ---------1g1aC01               1g1aC02                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhh..eeeee.......hhhhhh.......eeee.....hhhhhhhhhhhhh..eeee..............hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeee.hhhh..........................hhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee.......hhhhhhhhhhhhh..eeee.....ee..eehhhhhhhhhhhhhhh....eeee.....eehhhhhhhhhhhhhhh......hhh.eeee.............hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g1a C   1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSW 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  


Chain C from PDB  Type:PROTEIN  Length:352
 aligned with RMLB_SALTY | P26391 from UniProtKB/Swiss-Prot  Length:361

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
           RMLB_SALTY     1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSW 352
               SCOP domains d1g1ac_ C: dTDP-glucose 4,6-dehydratase (RmlB)                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1g1aC01 C:1-203,C:231-264,C:303-324 NAD(P)-binding Rossmann-like Domain                                                                                                                                    1g1aC02                    1g1aC01                           1g1aC02                      ---------1g1aC01               1g1aC02                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhh..eeeee.......hhhhhh.......eeee.....hhhhhhhhhhhhh..eeee..............hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeee.hhhh..........................hhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee.......hhhhhhhhhhhhh..eeee.....ee..eehhhhhhhhhhhhhhh....eeee.....eehhhhhhhhhhhhhhh......hhh.eeee.............hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g1a C   1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSW 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  


Chain D from PDB  Type:PROTEIN  Length:352
 aligned with Q9EU31_SALCE | Q9EU31 from UniProtKB/TrEMBL  Length:361

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
         Q9EU31_SALCE     1 MQILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSW 352
               SCOP domains d1g1ad_ D: dTDP-glucose 4,6-dehydratase (RmlB)                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1g1aD01 D:1-203,D:231-264,D:303-324 NAD(P)-binding Rossmann-like Domain                                                                                                                                    1g1aD02                    1g1aD01                           1g1aD02                      ---------1g1aD01               1g1aD02                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhh..eeeeee......hhhhhh.......eeeee....hhhhhhhhhhhhh..eeee..............hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeee.hhhh...hhhhhh.................hhhhhhhhhhhhhhhhhhhhhh..eeeeee.eee.......hhhhhhhhhhhh...eee......ee.eeehhhhhhhhhhhhhhh....eeee.....eehhhhhhhhhhhhhhh.....hhhh.eee..............hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g1a D   1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSW 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  


Chain D from PDB  Type:PROTEIN  Length:352
 aligned with RMLB_SALTY | P26391 from UniProtKB/Swiss-Prot  Length:361

    Alignment length:352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  
           RMLB_SALTY     1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSW 352
               SCOP domains d1g1ad_ D: dTDP-glucose 4,6-dehydratase (RmlB)                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 1g1aD01 D:1-203,D:231-264,D:303-324 NAD(P)-binding Rossmann-like Domain                                                                                                                                    1g1aD02                    1g1aD01                           1g1aD02                      ---------1g1aD01               1g1aD02                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhh..eeeeee......hhhhhh.......eeeee....hhhhhhhhhhhhh..eeee..............hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeee.hhhh...hhhhhh.................hhhhhhhhhhhhhhhhhhhhhh..eeeeee.eee.......hhhhhhhhhhhh...eee......ee.eeehhhhhhhhhhhhhhh....eeee.....eehhhhhhhhhhhhhhh.....hhhh.eee..............hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1g1a D   1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVNNVKSGAYQSW 352
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)
(-)
Enterica serovar typhimurium (Salmonella enterica subsp) (3)
1a1g1aA01A:1-203,A:231-264,A:303-324
1b1g1aB01B:1-203,B:231-264,B:303-324
1c1g1aC01C:1-203,C:231-264,C:303-324
1d1g1aD01D:1-203,D:231-264,D:303-324
(-)
Architecture: Alpha-Beta Complex (3881)
(-)
Topology: UDP-galactose 4-epimerase; domain 1 (99)
(-)
Homologous Superfamily: UDP-galactose 4-epimerase, domain 1 (99)
(-)
Enterica serovar typhimurium (Salmonella enterica subsp) (4)
2a1g1aA02A:204-230,A:265-293,A:325-352
2b1g1aB02B:204-230,B:265-293,B:325-352
2c1g1aC02C:204-230,C:265-293,C:325-352
2d1g1aD02D:204-230,D:265-293,D:325-352

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1G1A)

(-) Gene Ontology  (9, 12)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (RMLB_SALTY | P26391)
molecular function
    GO:0070404    NADH binding    Interacting selectively and non-covalently with the reduced form, NADH, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0008460    dTDP-glucose 4,6-dehydratase activity    Catalysis of the reaction: dTDP-glucose = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + H(2)O.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
    GO:0009243    O antigen biosynthetic process    The chemical reactions and pathways resulting in the formation of the O side chain of a lipopolysaccharide, which determines the antigenic specificity of the organism. It is made up of about 50 repeating units of a branched tetrasaccharide.
    GO:0019305    dTDP-rhamnose biosynthetic process    The chemical reactions and pathways resulting in the formation of dTDP-rhamnose, a substance composed of rhamnose in glycosidic linkage with deoxyribosylthymine diphosphate.
    GO:0045226    extracellular polysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of polysaccharides used in extracellular structures.
    GO:0009103    lipopolysaccharide biosynthetic process    The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.
    GO:0009225    nucleotide-sugar metabolic process    The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.

Chain A,B,C,D   (Q9EU31_SALCE | Q9EU31)
molecular function
    GO:0008460    dTDP-glucose 4,6-dehydratase activity    Catalysis of the reaction: dTDP-glucose = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + H(2)O.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0009225    nucleotide-sugar metabolic process    The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide-carbohydrate in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        RMLB_SALTY | P26391: 1keu 1kew

(-) Related Entries Specified in the PDB File

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