1FX7 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE IRON-DEPENDENT REGULATOR (IDER) FROM MYCOBACTERIUM TUBERCULOSIS

Authors :   M. D. Feese, B. P. Ingason, J. Goranson-Siekierke, R. K. Holmes, W. J. G. Hol

Date :   25 Sep 00 (Deposition) - 07 Mar 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: A (1x),B (1x),C (1x),D (1x)
Biol. Unit 4: A (1x),B (1x),C (1x),D (1x)
Biol. Unit 5: A (1x),B (1x),C (1x),D (1x)

Keywords :   Ider, Dtxr, Iron-Dependent Regulator, Mycobacterium Tuberculosis, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. D. Feese, B. P. Ingason, J. Goranson-Siekierke, R. K. Holmes, W. G. Hol
Crystal Structure Of The Iron-Dependent Regulator From Mycobacterium Tuberculosis At 2. 0-A Resolution Reveals The Src Homology Domain 3-Like Fold And Metal Binding Function Of The Third Domain.
J. Biol. Chem. V. 276 5959 2001
PubMed-ID: 11053439 | Reference-DOI: 10.1074/JBC.M007531200
(for further references see the PDB file header)

Molecule 1 - IRON-DEPENDENT REPRESSOR IDER
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Organelle	:	TB444 COSMID
	Expression System Plasmid	:	PBLUESCRIPT KS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	1773

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)
Biological Unit 4 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)
Biological Unit 5 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 30)

No.	Name	Count	Type	Full Name
1	CO	13	Ligand/Ion	COBALT (II) ION
2	SO4	17	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 11)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	SO4	11	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 6)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 3 (1, 11)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	SO4	11	Ligand/Ion	SULFATE ION

Biological Unit 4 (1, 11)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	SO4	11	Ligand/Ion	SULFATE ION

Biological Unit 5 (1, 6)

No.	Name	Count	Type	Full Name
1	CO	-1	Ligand/Ion	COBALT (II) ION
2	SO4	6	Ligand/Ion	SULFATE ION

Asymmetric Unit (30, 30)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:55 , ALA A:57 , GLY A:58 , HIS A:212 , GLU A:213 , HOH A:2074 , HOH A:2134 , HOH A:2171 , HOH A:2186	BINDING SITE FOR RESIDUE SO4 A 1001
02	AC2	SOFTWARE	LEU B:26 , ARG B:27 , ALA B:28 , ARG B:60 , HOH B:2055	BINDING SITE FOR RESIDUE SO4 B 1002
03	AC3	SOFTWARE	ARG B:60 , VAL C:23 , THR C:24 , ARG C:29 , HOH C:2015 , HOH C:2100	BINDING SITE FOR RESIDUE SO4 C 1003
04	AC4	SOFTWARE	VAL A:23 , THR A:24 , ARG A:29 , HOH A:2013 , HOH A:2016 , HOH A:2017 , HOH A:2018 , THR D:24 , ARG D:29	BINDING SITE FOR RESIDUE SO4 A 1004
05	AC5	SOFTWARE	VAL B:23 , THR B:24 , HOH B:2014 , HOH B:2016 , HOH B:2066	BINDING SITE FOR RESIDUE SO4 B 1005
06	AC6	SOFTWARE	LEU A:26 , ARG A:27 , ALA A:28 , ARG A:60 , HOH A:2062 , HOH A:2069 , ALA D:28 , HOH D:2117	BINDING SITE FOR RESIDUE SO4 A 1006
07	AC7	SOFTWARE	ARG B:27 , LEU C:26 , ARG C:27 , ALA C:28 , ARG C:60 , HOH C:2066	BINDING SITE FOR RESIDUE SO4 C 1007
08	AC8	SOFTWARE	PRO A:123 , THR A:124 , THR A:125 , HOH A:2213 , HOH A:2237 , HOH A:2252	BINDING SITE FOR RESIDUE SO4 A 1008
09	AC9	SOFTWARE	ARG B:84 , PRO B:123 , THR B:124 , THR B:125 , HOH B:2160	BINDING SITE FOR RESIDUE SO4 B 1009
10	BC1	SOFTWARE	PRO C:123 , THR C:124 , THR C:125	BINDING SITE FOR RESIDUE SO4 C 1010
11	BC2	SOFTWARE	ARG B:55 , THR B:65 , GLU B:66 , HOH B:2076	BINDING SITE FOR RESIDUE SO4 B 1011
12	BC3	SOFTWARE	ARG A:115 , PRO D:201 , GLY D:202 , HOH D:2074	BINDING SITE FOR RESIDUE SO4 D 1012
13	BC4	SOFTWARE	LYS A:78 , SER A:109 , GLU A:110 , HOH A:2026 , HOH A:2050 , HOH A:2198	BINDING SITE FOR RESIDUE SO4 A 1013
14	BC5	SOFTWARE	LYS B:78 , SER B:109 , GLU B:110 , HOH B:2042 , HOH B:2044 , HOH B:2104 , HOH B:2159 , HOH B:2215	BINDING SITE FOR RESIDUE SO4 B 1014
15	BC6	SOFTWARE	ARG D:55 , THR D:65 , GLU D:66 , HOH D:2128	BINDING SITE FOR RESIDUE SO4 D 1015
16	BC7	SOFTWARE	ARG B:194 , HOH C:2138	BINDING SITE FOR RESIDUE SO4 C 1016
17	BC8	SOFTWARE	ARG A:183 , THR A:216	BINDING SITE FOR RESIDUE SO4 A 1017
18	BC9	SOFTWARE	HIS A:79 , GLU A:83 , HIS A:98 , GLU A:172 , GLN A:175	BINDING SITE FOR RESIDUE CO A 2001
19	CC1	SOFTWARE	MET A:10 , CYS A:102 , GLU A:105 , HIS A:106 , HOH A:2011	BINDING SITE FOR RESIDUE CO A 2002
20	CC2	SOFTWARE	HIS B:79 , GLU B:83 , HIS B:98 , GLU B:172 , GLN B:175	BINDING SITE FOR RESIDUE CO B 2003
21	CC3	SOFTWARE	MET B:10 , CYS B:102 , GLU B:105 , HIS B:106 , HOH B:2012	BINDING SITE FOR RESIDUE CO B 2004
22	CC4	SOFTWARE	HIS C:79 , GLU C:83 , HIS C:98 , GLU C:172 , GLN C:175	BINDING SITE FOR RESIDUE CO C 2005
23	CC5	SOFTWARE	MET C:10 , CYS C:102 , GLU C:105 , HIS C:106 , HOH C:2013	BINDING SITE FOR RESIDUE CO C 2006
24	CC6	SOFTWARE	HIS D:79 , GLU D:83 , HIS D:98 , GLU D:172 , GLN D:175	BINDING SITE FOR RESIDUE CO D 2007
25	CC7	SOFTWARE	MET D:10 , CYS D:102 , GLU D:105 , HIS D:106 , HOH D:2015	BINDING SITE FOR RESIDUE CO D 2008
26	CC8	SOFTWARE	HIS A:219 , HIS A:223 , HOH A:2013 , HOH A:2014 , HOH A:2015 , HOH A:2016	BINDING SITE FOR RESIDUE CO A 2009
27	CC9	SOFTWARE	HIS B:219 , HIS B:223 , HOH B:2014 , HOH B:2015 , HOH B:2016	BINDING SITE FOR RESIDUE CO B 2010
28	DC1	SOFTWARE	HIS C:219 , HIS C:223 , HOH C:2015 , HOH C:2016 , HOH C:2017 , HOH C:2018	BINDING SITE FOR RESIDUE CO C 2011
29	DC2	SOFTWARE	HIS D:219 , HIS D:223 , HOH D:2017 , HOH D:2018 , HOH D:2019 , HOH D:2020	BINDING SITE FOR RESIDUE CO D 2012
30	DC3	SOFTWARE	HIS B:212 , HIS C:212 , HIS D:212 , HOH D:2021 , HOH D:2022	BINDING SITE FOR RESIDUE CO D 2013

(no "SS Bond" information available for 1FX7)

(no "Cis Peptide Bond" information available for 1FX7)

(no "SAP(SNP)/Variant" information available for 1FX7)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_DTXR	PS50944	DtxR-type HTH domain profile.	IDER_MYCTO	4-65	4	A:4-65 B:4-65 C:4-65 D:4-65
1	HTH_DTXR	PS50944	DtxR-type HTH domain profile.	IDER_MYCTU	4-65	4	A:4-65 B:4-65 C:4-65 D:4-65

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_DTXR	PS50944	DtxR-type HTH domain profile.	IDER_MYCTO	4-65	2	A:4-65 B:4-65 - -
1	HTH_DTXR	PS50944	DtxR-type HTH domain profile.	IDER_MYCTU	4-65	2	A:4-65 B:4-65 - -

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_DTXR	PS50944	DtxR-type HTH domain profile.	IDER_MYCTO	4-65	2	- - C:4-65 D:4-65
1	HTH_DTXR	PS50944	DtxR-type HTH domain profile.	IDER_MYCTU	4-65	2	- - C:4-65 D:4-65

Biological Unit 3 (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_DTXR	PS50944	DtxR-type HTH domain profile.	IDER_MYCTO	4-65	4	A:4-65 B:4-65 C:4-65 D:4-65
1	HTH_DTXR	PS50944	DtxR-type HTH domain profile.	IDER_MYCTU	4-65	4	A:4-65 B:4-65 C:4-65 D:4-65

Biological Unit 4 (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_DTXR	PS50944	DtxR-type HTH domain profile.	IDER_MYCTO	4-65	4	A:4-65 B:4-65 C:4-65 D:4-65
1	HTH_DTXR	PS50944	DtxR-type HTH domain profile.	IDER_MYCTU	4-65	4	A:4-65 B:4-65 C:4-65 D:4-65

Biological Unit 5 (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HTH_DTXR	PS50944	DtxR-type HTH domain profile.	IDER_MYCTO	4-65	4	A:4-65 B:4-65 C:4-65 D:4-65
1	HTH_DTXR	PS50944	DtxR-type HTH domain profile.	IDER_MYCTU	4-65	4	A:4-65 B:4-65 C:4-65 D:4-65

(no "Exon" information available for 1FX7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:230
 aligned with IDER_MYCTO | P9WMH0 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
           IDER_MYCTO     1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLVELGVGPEPGADDANLVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV 230
               SCOP domains d1fx7a1 A:1-64 Iron-dependent regulator IdeR                    d1fx7a2 A:65-144 Iron-dependent regulator                                       d1fx7a3 A:145-230 Iron-dependent regulator IdeR                                        SCOP domains
               CATH domains 1fx7A01 A:1-73 'winged helix' repressor DNA binding domain               1fx7A02 A:74-143 Diphtheria Toxin Repressor, domain 2                 1fx7A03 A:144-230  [code=2.30.30.90, no name defined]                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eee.....eeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhh.............hhhhhh............ee.hhh.....eeeeeeeehhhhhhhhhhhhhhhhh......eeeeee.....eeee......eeehhhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---HTH_DTXR  PDB: A:4-65 UniProt: 4-65                           --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fx7 A   1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLDELGVGPEPGADDANLVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV 230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

Chain A from PDB  Type:PROTEIN  Length:230
 aligned with IDER_MYCTU | P9WMH1 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
           IDER_MYCTU     1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLVELGVGPEPGADDANLVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV 230
               SCOP domains d1fx7a1 A:1-64 Iron-dependent regulator IdeR                    d1fx7a2 A:65-144 Iron-dependent regulator                                       d1fx7a3 A:145-230 Iron-dependent regulator IdeR                                        SCOP domains
               CATH domains 1fx7A01 A:1-73 'winged helix' repressor DNA binding domain               1fx7A02 A:74-143 Diphtheria Toxin Repressor, domain 2                 1fx7A03 A:144-230  [code=2.30.30.90, no name defined]                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eee.....eeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhh.............hhhhhh............ee.hhh.....eeeeeeeehhhhhhhhhhhhhhhhh......eeeeee.....eeee......eeehhhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---HTH_DTXR  PDB: A:4-65 UniProt: 4-65                           --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fx7 A   1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLDELGVGPEPGADDANLVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV 230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230

Chain B from PDB  Type:PROTEIN  Length:220
 aligned with IDER_MYCTO | P9WMH0 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
           IDER_MYCTO     1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLVELGVGPEPGADDANLVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV 230
               SCOP domains d1fx7b1 B:1-64 Iron-dependent regulator IdeR                    d1fx7b2 B:65-140 Iron-dependent regulator                                   ----------d1fx7b3 B:151-230 Iron-dependent regulator IdeR                                  SCOP domains
               CATH domains 1fx7B01 B:1-73 'winged helix' repressor DNA binding domain               1fx7B02 B:74-140 Diphtheria Toxin Repressor, domain 2              ----------1fx7B03 B:151-230  [code=2.30.30.90, no name defined]                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eee.....eeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhh.............hhhhhh.----------.ee........eeeeeeeeehhhhhhhhhhhhhhhhh......eeeeee.....eee.......eeehhhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---HTH_DTXR  PDB: B:4-65 UniProt: 4-65                           --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fx7 B   1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLDELGV----------LVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV 230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         -|      160       170       180       190       200       210       220       230
                                                                                                                                                                     140        151

Chain B from PDB  Type:PROTEIN  Length:220
 aligned with IDER_MYCTU | P9WMH1 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
           IDER_MYCTU     1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLVELGVGPEPGADDANLVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV 230
               SCOP domains d1fx7b1 B:1-64 Iron-dependent regulator IdeR                    d1fx7b2 B:65-140 Iron-dependent regulator                                   ----------d1fx7b3 B:151-230 Iron-dependent regulator IdeR                                  SCOP domains
               CATH domains 1fx7B01 B:1-73 'winged helix' repressor DNA binding domain               1fx7B02 B:74-140 Diphtheria Toxin Repressor, domain 2              ----------1fx7B03 B:151-230  [code=2.30.30.90, no name defined]                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eee.....eeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhh.............hhhhhh.----------.ee........eeeeeeeeehhhhhhhhhhhhhhhhh......eeeeee.....eee.......eeehhhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---HTH_DTXR  PDB: B:4-65 UniProt: 4-65                           --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fx7 B   1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLDELGV----------LVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV 230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         -|      160       170       180       190       200       210       220       230
                                                                                                                                                                     140        151

Chain C from PDB  Type:PROTEIN  Length:220
 aligned with IDER_MYCTO | P9WMH0 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
           IDER_MYCTO     1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLVELGVGPEPGADDANLVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV 230
               SCOP domains d1fx7c1 C:1-64 Iron-dependent regulator IdeR                    d1fx7c2 C:65-140 Iron-dependent regulator                                   ----------d1fx7c3 C:151-230 Iron-dependent regulator IdeR                                  SCOP domains
               CATH domains 1fx7C01 C:1-73 'winged helix' repressor DNA binding domain               1fx7C02 C:74-140 Diphtheria Toxin Repressor, domain 2              ----------1fx7C03 C:151-230  [code=2.30.30.90, no name defined]                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhh..eee.....eeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhh.............hhhhhh.----------.ee.hhh.....eeeeeeeehhhhhhhhhhhhhhhhh......eeeeee.....eee.......eeehhhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---HTH_DTXR  PDB: C:4-65 UniProt: 4-65                           --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fx7 C   1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLDELGV----------LVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV 230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         -|      160       170       180       190       200       210       220       230
                                                                                                                                                                     140        151

Chain C from PDB  Type:PROTEIN  Length:220
 aligned with IDER_MYCTU | P9WMH1 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
           IDER_MYCTU     1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLVELGVGPEPGADDANLVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV 230
               SCOP domains d1fx7c1 C:1-64 Iron-dependent regulator IdeR                    d1fx7c2 C:65-140 Iron-dependent regulator                                   ----------d1fx7c3 C:151-230 Iron-dependent regulator IdeR                                  SCOP domains
               CATH domains 1fx7C01 C:1-73 'winged helix' repressor DNA binding domain               1fx7C02 C:74-140 Diphtheria Toxin Repressor, domain 2              ----------1fx7C03 C:151-230  [code=2.30.30.90, no name defined]                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhh..eee.....eeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhh.............hhhhhh.----------.ee.hhh.....eeeeeeeehhhhhhhhhhhhhhhhh......eeeeee.....eee.......eeehhhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---HTH_DTXR  PDB: C:4-65 UniProt: 4-65                           --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fx7 C   1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLDELGV----------LVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV 230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         -|      160       170       180       190       200       210       220       230
                                                                                                                                                                     140        151

Chain D from PDB  Type:PROTEIN  Length:220
 aligned with IDER_MYCTO | P9WMH0 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
           IDER_MYCTO     1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLVELGVGPEPGADDANLVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV 230
               SCOP domains d1fx7d1 D:1-64 Iron-dependent regulator IdeR                    d1fx7d2 D:65-140 Iron-dependent regulator                                   ----------d1fx7d3 D:151-230 Iron-dependent regulator IdeR                                  SCOP domains
               CATH domains 1fx7D01 D:1-73 'winged helix' repressor DNA binding domain               1fx7D02 D:74-140 Diphtheria Toxin Repressor, domain 2              ----------1fx7D03 D:151-230  [code=2.30.30.90, no name defined]                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhhhhhh..eee.....eeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhh............hhhhhh.----------.ee.hhh.....eeeeeeeehhhhhhhhhhhhhhhhh......eeeeeee...eeeee......eeehhhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---HTH_DTXR  PDB: D:4-65 UniProt: 4-65                           --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fx7 D   1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLDELGV----------LVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV 230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         -|      160       170       180       190       200       210       220       230
                                                                                                                                                                     140        151

Chain D from PDB  Type:PROTEIN  Length:220
 aligned with IDER_MYCTU | P9WMH1 from UniProtKB/Swiss-Prot  Length:230

    Alignment length:230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
           IDER_MYCTU     1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLVELGVGPEPGADDANLVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV 230
               SCOP domains d1fx7d1 D:1-64 Iron-dependent regulator IdeR                    d1fx7d2 D:65-140 Iron-dependent regulator                                   ----------d1fx7d3 D:151-230 Iron-dependent regulator IdeR                                  SCOP domains
               CATH domains 1fx7D01 D:1-73 'winged helix' repressor DNA binding domain               1fx7D02 D:74-140 Diphtheria Toxin Repressor, domain 2              ----------1fx7D03 D:151-230  [code=2.30.30.90, no name defined]                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhhhhhh..eee.....eeehhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhh............hhhhhh.----------.ee.hhh.....eeeeeeeehhhhhhhhhhhhhhhhh......eeeeeee...eeeee......eeehhhhhh.eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---HTH_DTXR  PDB: D:4-65 UniProt: 4-65                           --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fx7 D   1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMSEDVERRLVKVLNNPTTSPFGNPIPGLDELGV----------LVRLTELPAGSPVAVVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHENVTLPHEMAHAVKVEKV 230
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140         -|      160       170       180       190       200       210       220       230
                                                                                                                                                                     140        151

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Arc Repressor Mutant, subunit A (1030)

Homologous Superfamily: 'winged helix' repressor DNA binding domain (507)

Mycobacterium tuberculosis. Organism_taxid: 1773. (2)

1a	1fx7A01	A:1-73
1b	1fx7B01	B:1-73
1c	1fx7C01	C:1-73
1d	1fx7D01	D:1-73

Topology: Diphtheria Toxin Repressor; domain 2 (34)

Homologous Superfamily: Diphtheria Toxin Repressor, domain 2 (32)

Mycobacterium tuberculosis. Organism_taxid: 1773. (2)

2a	1fx7B02	B:74-140
2b	1fx7C02	C:74-140
2c	1fx7D02	D:74-140
2d	1fx7A02	A:74-143

Class: Mainly Beta (13760)

Architecture: Roll (1513)

Topology: SH3 type barrels. (648)

Homologous Superfamily: [code=2.30.30.90, no name defined] (14)

Mycobacterium tuberculosis. Organism_taxid: 1773. (1)

3a	1fx7B03	B:151-230
3b	1fx7C03	C:151-230
3c	1fx7D03	D:151-230
3d	1fx7A03	A:144-230

(no "Pfam Domain" information available for 1FX7)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (IDER_MYCTU | P9WMH1)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046870	cadmium ion binding	Interacting selectively and non-covalently with cadmium (Cd) ions.
	GO:0050897	cobalt ion binding	Interacting selectively and non-covalently with a cobalt (Co) ion.
	GO:0008198	ferrous iron binding	Interacting selectively and non-covalently with ferrous iron, Fe(II).
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0030145	manganese ion binding	Interacting selectively and non-covalently with manganese (Mn) ions.
	GO:0016151	nickel cation binding	Interacting selectively and non-covalently with nickel (Ni) cations.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0046983	protein dimerization activity	The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
	GO:0046914	transition metal ion binding	Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0040007	growth	The increase in size or mass of an entire organism, a part of an organism or a cell.
	GO:0045892	negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006979	response to oxidative stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
	GO:0019540	siderophore biosynthetic process from catechol	The chemical reactions and pathways resulting in the formation of a siderophore from other compounds, including catechol.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005618	cell wall	The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain A,B,C,D (IDER_MYCTO | P9WMH0)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046983	protein dimerization activity	The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
	GO:0046914	transition metal ion binding	Interacting selectively and non-covalently with a transition metal ions; a transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver.
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	1fx7
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	IDER_MYCTU \| P9WMH1
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	IDER_MYCTO \| P9WMH0	:	1b1b 1u8r 2isy 2isz 2it0
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Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (2, 30)

Sites (30, 30)

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