1FJC - JenaLib

Title :   SOLUTION STRUCTURE OF NUCLEOLIN RBD2

Authors :   F. H. -T. Allain, D. E. Gilbert, P. Bouvet, J. Feigon

Date :   07 Aug 00 (Deposition) - 16 Oct 00 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (33x)

Keywords :   Rnp, Rbd, Rrm, Rna Binding Domain, Nucleolus, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. H. Allain, D. E. Gilbert, P. Bouvet, J. Feigon
Solution Structure Of The Two N-Terminal Rna-Binding Domains Of Nucleolin And Nmr Study Of The Interaction With Its Rna Target.
J. Mol. Biol. V. 303 227 2000
PubMed-ID: 11023788 | Reference-DOI: 10.1006/JMBI.2000.4118
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:96
 aligned with NUCL_MESAU | P08199 from UniProtKB/Swiss-Prot  Length:714

    Alignment length:187
                                   385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       
           NUCL_MESAU   376 EIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRG 562
               SCOP domains d1fjca_   A: Nucleolin                                                                                                                                                                      SCOP domains
               CATH domains 1fjcA00   A:1-96  [code=3.30.70.330, no name defined]                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......--......hhh.eeeee......hhhhhhhhhh.eeee..eee..eeeeeeeeee.hhhhhhhhhhhh.eeee..eeeeeee.....-----------------------------------------------------------------------------------------.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE RRM      ---------RRM  PDB: A:17-90 UniProt: 394-467                                        ------------------RRM  PDB: A:93-93 UniProt: 486-560                                         -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fjc A   1 SHMLEDP--CTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG-----------------------------------------------------------------------------------------GTRG  96
                                  |  8        18        28        38        48        58        68        78        88   |     -         -         -         -         -         -         -         -         -   |   
                                  7  8                                                                                  92                                                                                        93

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

NMR Structure(hide GO term definitions)

Chain A (NUCL_MESAU | P08199)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0042162	telomeric DNA binding	Interacting selectively and non-covalently with a telomere, a specific structure at the end of a linear chromosome required for the integrity and maintenance of the end.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0030529	intracellular ribonucleoprotein complex	An intracellular macromolecular complex containing both protein and RNA molecules.
	GO:0005730	nucleolus	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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