1FDJ - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE FROM RABBIT LIVER

Authors :   N. S. Blom, A. White, J. Sygusch

Date :   20 Jul 00 (Deposition) - 25 Jul 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (2x)
Biol. Unit 2: C,D  (2x)

Keywords :   Aldolase, Lyase (Aldehyde), Schiff Base, Glycolysis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. S. Blom, A. White, J. Sygusch
Reaction Intermediates Of Rabbit Liver D-Fructose 1, 6-Bisphosphate Aldolase
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE
	Chains	:	A, B, C, D
	EC Number	:	4.1.2.13
	Organ	:	LIVER
	Organism Common	:	RABBIT
	Organism Scientific	:	ORYCTOLAGUS CUNICULUS
	Organism Taxid	:	9986

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (2x)	:	A	B
Biological Unit 2 (2x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 11)

No.	Name	Count	Type	Full Name
1	13P	4	Ligand/Ion	1,3-DIHYDROXYACETONEPHOSPHATE
2	2FP	2	Ligand/Ion	1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)
3	G3P	1	Ligand/Ion	SN-GLYCEROL-3-PHOSPHATE
4	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 1 (4, 12)

No.	Name	Count	Type	Full Name
1	13P	2	Ligand/Ion	1,3-DIHYDROXYACETONEPHOSPHATE
2	2FP	4	Ligand/Ion	1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)
3	G3P	2	Ligand/Ion	SN-GLYCEROL-3-PHOSPHATE
4	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 10)

No.	Name	Count	Type	Full Name
1	13P	6	Ligand/Ion	1,3-DIHYDROXYACETONEPHOSPHATE
2	2FP	-1	Ligand/Ion	1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)
3	G3P	-1	Ligand/Ion	SN-GLYCEROL-3-PHOSPHATE
4	SO4	4	Ligand/Ion	SULFATE ION

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:1258 , HOH A:5733 , LYS B:2012 , HOH B:6216	BINDING SITE FOR RESIDUE SO4 A 5000
02	AC2	SOFTWARE	ARG A:1042 , LYS A:1107 , LYS A:1146 , ARG A:1148 , GLU A:1187 , GLU A:1189 , SER A:1271 , GLY A:1272 , GLY A:1273 , GLY A:1302 , ARG A:1303 , HOH A:5148 , HOH A:5209 , HOH A:5210 , HOH A:5303 , HOH A:5306 , HOH A:5458 , HOH A:5626 , HOH A:5629 , HOH A:5682 , HOH A:5708 , HOH A:5709 , HOH A:5710 , HOH A:5711 , HOH A:5713 , HOH A:5714 , HOH A:5715 , HOH A:5716 , HOH A:5717	BINDING SITE FOR RESIDUE 2FP A 5001
03	AC3	SOFTWARE	LYS A:1012 , GLN B:2202 , ARG B:2258 , HOH B:6004 , HOH B:6034 , HOH B:6540	BINDING SITE FOR RESIDUE SO4 B 6000
04	AC4	SOFTWARE	ASP B:2033 , LYS B:2107 , LYS B:2146 , ARG B:2148 , GLU B:2187 , GLU B:2189 , LYS B:2229 , LEU B:2270 , SER B:2271 , GLY B:2272 , GLY B:2273 , SER B:2300 , GLY B:2302 , ARG B:2303 , 13P B:6002 , G3P B:6003 , HOH B:6781 , HOH B:6783 , HOH B:6785 , HOH B:6787 , HOH B:6788 , HOH B:6793 , HOH B:6795 , HOH B:6797 , HOH B:6799 , HOH B:6800	BINDING SITE FOR RESIDUE 2FP B 6001
05	AC5	SOFTWARE	ALA B:2031 , LYS B:2229 , LEU B:2270 , SER B:2271 , GLY B:2273 , SER B:2300 , TYR B:2301 , GLY B:2302 , ARG B:2303 , 2FP B:6001 , HOH B:6784 , HOH B:6786 , HOH B:6788 , HOH B:6793 , HOH B:6800	BINDING SITE FOR RESIDUE 13P B 6002
06	AC6	SOFTWARE	THR B:2038 , LYS B:2146 , ARG B:2148 , 2FP B:6001 , HOH B:6315 , HOH B:6373 , HOH B:6503 , HOH B:6781 , HOH B:6783 , HOH B:6785 , HOH B:6788 , HOH B:6790 , HOH B:6792 , HOH B:6799	BINDING SITE FOR RESIDUE G3P B 6003
07	AC7	SOFTWARE	GLN C:3202 , ARG C:3258 , HOH C:7098 , LYS D:4012	BINDING SITE FOR RESIDUE SO4 C 7000
08	AC8	SOFTWARE	ALA C:3031 , ASP C:3033 , GLU C:3034 , LYS C:3146 , LYS C:3229 , SER C:3271 , GLY C:3272 , GLY C:3273 , GLY C:3302 , ARG C:3303 , HOH C:7702 , HOH C:7703 , HOH C:7890 , HOH C:7892 , HOH C:7893 , HOH C:7894 , HOH C:7895 , HOH C:7896 , HOH C:7898 , HOH C:7901	BINDING SITE FOR RESIDUE 13P C 7001
09	AC9	SOFTWARE	LYS C:3012 , GLN D:4202 , THR D:4254 , ARG D:4258 , HOH D:8047 , HOH D:8048	BINDING SITE FOR RESIDUE SO4 D 8000
10	BC1	SOFTWARE	ALA D:4031 , ASP D:4033 , GLU D:4034 , ARG D:4042 , SER D:4271 , GLY D:4272 , GLY D:4273 , GLY D:4302 , ARG D:4303 , TYR D:4363 , HOH D:8091 , HOH D:8916 , HOH D:8918 , HOH D:8920 , HOH D:8922 , HOH D:8925 , HOH D:8927 , HOH D:8928	BINDING SITE FOR RESIDUE 13P D 8001
11	BC2	SOFTWARE	ARG D:4042 , GLU D:4187 , LEU D:4270 , SER D:4271 , GLY D:4272 , GLY D:4273 , GLY D:4302 , ARG D:4303 , TYR D:4363 , HOH D:8693 , HOH D:8887 , HOH D:8915 , HOH D:8918 , HOH D:8919 , HOH D:8920 , HOH D:8922 , HOH D:8924 , HOH D:8928	BINDING SITE FOR RESIDUE 13P D 8002

(no "SS Bond" information available for 1FDJ)

Asymmetric Unit

No.	Residues
1	Cys A:1157	-	Pro A:1158
2	Cys B:2157	-	Pro B:2158
3	Cys C:3157	-	Pro C:3158
4	Cys D:4157	-	Pro D:4158

(no "SAP(SNP)/Variant" information available for 1FDJ)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ALDOLASE_CLASS_I	PS00158	Fructose-bisphosphate aldolase class-I active site.	ALDOB_RABIT	222-232	4	A:1221-1231 B:2221-2231 C:3221-3231 D:4221-4231

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ALDOLASE_CLASS_I	PS00158	Fructose-bisphosphate aldolase class-I active site.	ALDOB_RABIT	222-232	4	A:1221-1231 B:2221-2231 - -

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ALDOLASE_CLASS_I	PS00158	Fructose-bisphosphate aldolase class-I active site.	ALDOB_RABIT	222-232	4	- - C:3221-3231 D:4221-4231

Asymmetric Unit (8, 32)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSOCUT00000014943	1	ENSOCUE00000274951	chr1:11574697-11574808	112	ALDOB_RABIT	1-38	38	4	A:1001-1037 B:2001-2037 C:3001-3037 D:4001-4037	37 37 37 37
1.2	ENSOCUT00000014943	2	ENSOCUE00000174466	chr1:11575564-11575775	212	ALDOB_RABIT	38-108	71	4	A:1037-1107 B:2037-2107 C:3037-3107 D:4037-4107	71 71 71 71
1.3	ENSOCUT00000014943	3	ENSOCUE00000174472	chr1:11576543-11576597	55	ALDOB_RABIT	109-127	19	4	A:1108-1126 B:2108-2126 C:3108-3126 D:4108-4126	19 19 19 19
1.4	ENSOCUT00000014943	4	ENSOCUE00000174476	chr1:11577340-11577500	161	ALDOB_RABIT	127-180	54	4	A:1126-1179 B:2126-2179 C:3126-3179 D:4126-4179	54 54 54 54
1.5	ENSOCUT00000014943	5	ENSOCUE00000174481	chr1:11578387-11578470	84	ALDOB_RABIT	181-208	28	4	A:1180-1207 B:2180-2207 C:3180-3207 D:4180-4207	28 28 28 28
1.6	ENSOCUT00000014943	6	ENSOCUE00000313548	chr1:11579777-11579951	175	ALDOB_RABIT	209-267	59	4	A:1208-1266 B:2208-2266 C:3208-3266 D:4208-4266	59 59 59 59
1.7	ENSOCUT00000014943	7	ENSOCUE00000174489	chr1:11580363-11580562	200	ALDOB_RABIT	267-333	67	4	A:1266-1332 B:2266-2332 C:3266-3332 D:4266-4332	67 67 67 67
1.8	ENSOCUT00000014943	8	ENSOCUE00000174491	chr1:11583119-11583255	137	ALDOB_RABIT	334-364	31	4	A:1333-1363 B:2333-2363 C:3333-3363 D:4333-4363	31 31 31 31

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:363
 aligned with ALDOB_RABIT | P79226 from UniProtKB/Swiss-Prot  Length:364

    Alignment length:363
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361   
         ALDOB_RABIT      2 AHRFPALTPEQKKELSDIAQRIVANGKGILAADESVGTMGNRLQRIKVENTEENRRQFREILFTVDNSINQSIGGVILFHETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKETTIQGLDGLSERCAQYKKDGVDFGKWRAVLRIADQCPSSLAIQENANTLARYASICQQNGLVPIVEPEVIPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGHACTKKYTPEQVAMATVTALHRTVPAAVPGICFLSGGMSEEDATLNLNAINLCPLPKPWKLSFSYGRALQASALAAWGGKAENKKATQEAFMKRAVVNCQAAKGQYVHTGSSGAASTQSLFTASYTY  364
               SCOP domains d1fdja_ A: Fructose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1fdjA00 A:1001-1363 Aldolase class I                                                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhheeeee..hhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhh.eeeeeehhhhhh.......hhhhhhhhh..eeeee....eee.......eee....hhhhhhhhhhhh...eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhh..hhhhhee...............hhhhhhhhhhhhhhh.......eeee.....hhhhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh......................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDOLASE_CL------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1  PDB: A:1001-1037           ----------------------------------------------------------------------Exon 1.3           -----------------------------------------------------Exon 1.5  PDB: A:1180-1207  Exon 1.6  PDB: A:1208-1266 UniProt: 209-267                ------------------------------------------------------------------Exon 1.8  PDB: A:1333-1363      Transcript 1 (1)
           Transcript 1 (2) ------------------------------------Exon 1.2  PDB: A:1037-1107 UniProt: 38-108                             ------------------Exon 1.4  PDB: A:1126-1179 UniProt: 127-180           --------------------------------------------------------------------------------------Exon 1.7  PDB: A:1266-1332 UniProt: 267-333                        ------------------------------- Transcript 1 (2)
                1fdj A 1001 AHRFPALTPEQKKELSDIAQRIVANGKGILAADESVGTMGNRLQRIKVENSEENRRQFREILFTVDNSINQSIGGVILFHETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKETTIQGLDGLSERCAQYKKDGVDFGKWRAVLRIADQCPSSLAIQENANTLARYASICQQNGLVPIVEPEVIPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGHACTKKYTPEQVAMATVTALHRTVPAAVPGICFLSGGMSEEDATLNLNAINLCPLPKPWKLSFSYGRALQASALAAWGGKAENKKATQEAFMKRAVVNCQAAKGQYVHTGSSGAASTQSLFTASYTY 1363
                                  1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190      1200      1210      1220      1230      1240      1250      1260      1270      1280      1290      1300      1310      1320      1330      1340      1350      1360

Chain B from PDB  Type:PROTEIN  Length:363
 aligned with ALDOB_RABIT | P79226 from UniProtKB/Swiss-Prot  Length:364

    Alignment length:363
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361   
         ALDOB_RABIT      2 AHRFPALTPEQKKELSDIAQRIVANGKGILAADESVGTMGNRLQRIKVENTEENRRQFREILFTVDNSINQSIGGVILFHETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKETTIQGLDGLSERCAQYKKDGVDFGKWRAVLRIADQCPSSLAIQENANTLARYASICQQNGLVPIVEPEVIPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGHACTKKYTPEQVAMATVTALHRTVPAAVPGICFLSGGMSEEDATLNLNAINLCPLPKPWKLSFSYGRALQASALAAWGGKAENKKATQEAFMKRAVVNCQAAKGQYVHTGSSGAASTQSLFTASYTY  364
               SCOP domains d1fdjb_ B: Fructose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1fdjB00 B:2001-2363 Aldolase class I                                                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhheeee...hhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhh.eeeeeehhhhhhh......hhhhhhhhh..eeeee....eee.......eee....hhhhhhhhhhhh...eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhh..hhhhhee...............hhhhhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhh.......eeeeeehhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...............hhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDOLASE_CL------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1  PDB: B:2001-2037           ----------------------------------------------------------------------Exon 1.3           -----------------------------------------------------Exon 1.5  PDB: B:2180-2207  Exon 1.6  PDB: B:2208-2266 UniProt: 209-267                ------------------------------------------------------------------Exon 1.8  PDB: B:2333-2363      Transcript 1 (1)
           Transcript 1 (2) ------------------------------------Exon 1.2  PDB: B:2037-2107 UniProt: 38-108                             ------------------Exon 1.4  PDB: B:2126-2179 UniProt: 127-180           --------------------------------------------------------------------------------------Exon 1.7  PDB: B:2266-2332 UniProt: 267-333                        ------------------------------- Transcript 1 (2)
                1fdj B 2001 AHRFPALTPEQKKELSDIAQRIVANGKGILAADESVGTMGNRLQRIKVENSEENRRQFREILFTVDNSINQSIGGVILFHETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKETTIQGLDGLSERCAQYKKDGVDFGKWRAVLRIADQCPSSLAIQENANTLARYASICQQNGLVPIVEPEVIPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGHACTKKYTPEQVAMATVTALHRTVPAAVPGICFLSGGMSEEDATLNLNAINLCPLPKPWKLSFSYGRALQASALAAWGGKAENKKATQEAFMKRAVVNCQAAKGQYVHTGSSGAASTQSLFTASYTY 2363
                                  2010      2020      2030      2040      2050      2060      2070      2080      2090      2100      2110      2120      2130      2140      2150      2160      2170      2180      2190      2200      2210      2220      2230      2240      2250      2260      2270      2280      2290      2300      2310      2320      2330      2340      2350      2360

Chain C from PDB  Type:PROTEIN  Length:363
 aligned with ALDOB_RABIT | P79226 from UniProtKB/Swiss-Prot  Length:364

    Alignment length:363
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361   
         ALDOB_RABIT      2 AHRFPALTPEQKKELSDIAQRIVANGKGILAADESVGTMGNRLQRIKVENTEENRRQFREILFTVDNSINQSIGGVILFHETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKETTIQGLDGLSERCAQYKKDGVDFGKWRAVLRIADQCPSSLAIQENANTLARYASICQQNGLVPIVEPEVIPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGHACTKKYTPEQVAMATVTALHRTVPAAVPGICFLSGGMSEEDATLNLNAINLCPLPKPWKLSFSYGRALQASALAAWGGKAENKKATQEAFMKRAVVNCQAAKGQYVHTGSSGAASTQSLFTASYTY  364
               SCOP domains d1fdjc_ C: Fructose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1fdjC00 C:3001-3363 Aldolase class I                                                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhheeeee..hhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhh.eeeeee..hhhhh......hhhhhhhhh..eeeee....eee.......eee....hhhhhhhhhhhh...eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhh..hhhhhee...............hhhhhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh......................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDOLASE_CL------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1  PDB: C:3001-3037           ----------------------------------------------------------------------Exon 1.3           -----------------------------------------------------Exon 1.5  PDB: C:3180-3207  Exon 1.6  PDB: C:3208-3266 UniProt: 209-267                ------------------------------------------------------------------Exon 1.8  PDB: C:3333-3363      Transcript 1 (1)
           Transcript 1 (2) ------------------------------------Exon 1.2  PDB: C:3037-3107 UniProt: 38-108                             ------------------Exon 1.4  PDB: C:3126-3179 UniProt: 127-180           --------------------------------------------------------------------------------------Exon 1.7  PDB: C:3266-3332 UniProt: 267-333                        ------------------------------- Transcript 1 (2)
                1fdj C 3001 AHRFPALTPEQKKELSDIAQRIVANGKGILAADESVGTMGNRLQRIKVENSEENRRQFREILFTVDNSINQSIGGVILFHETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKETTIQGLDGLSERCAQYKKDGVDFGKWRAVLRIADQCPSSLAIQENANTLARYASICQQNGLVPIVEPEVIPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGHACTKKYTPEQVAMATVTALHRTVPAAVPGICFLSGGMSEEDATLNLNAINLCPLPKPWKLSFSYGRALQASALAAWGGKAENKKATQEAFMKRAVVNCQAAKGQYVHTGSSGAASTQSLFTASYTY 3363
                                  3010      3020      3030      3040      3050      3060      3070      3080      3090      3100      3110      3120      3130      3140      3150      3160      3170      3180      3190      3200      3210      3220      3230      3240      3250      3260      3270      3280      3290      3300      3310      3320      3330      3340      3350      3360

Chain D from PDB  Type:PROTEIN  Length:363
 aligned with ALDOB_RABIT | P79226 from UniProtKB/Swiss-Prot  Length:364

    Alignment length:363
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361   
         ALDOB_RABIT      2 AHRFPALTPEQKKELSDIAQRIVANGKGILAADESVGTMGNRLQRIKVENTEENRRQFREILFTVDNSINQSIGGVILFHETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKETTIQGLDGLSERCAQYKKDGVDFGKWRAVLRIADQCPSSLAIQENANTLARYASICQQNGLVPIVEPEVIPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGHACTKKYTPEQVAMATVTALHRTVPAAVPGICFLSGGMSEEDATLNLNAINLCPLPKPWKLSFSYGRALQASALAAWGGKAENKKATQEAFMKRAVVNCQAAKGQYVHTGSSGAASTQSLFTASYTY  364
               SCOP domains d1fdjd_ D: Fructose-1,6-bisphosphate aldolase                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1fdjD00 D:4001-4363 Aldolase class I                                                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhheeee...hhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhh.eeeeee.hhhhhh......hhhhhhhhh..eeeee....eee.......eee....hhhhhhhhhhhh...eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhh..hhhhhee...............hhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhhhh......eeeeeehhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh......................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDOLASE_CL------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1  PDB: D:4001-4037           ----------------------------------------------------------------------Exon 1.3           -----------------------------------------------------Exon 1.5  PDB: D:4180-4207  Exon 1.6  PDB: D:4208-4266 UniProt: 209-267                ------------------------------------------------------------------Exon 1.8  PDB: D:4333-4363      Transcript 1 (1)
           Transcript 1 (2) ------------------------------------Exon 1.2  PDB: D:4037-4107 UniProt: 38-108                             ------------------Exon 1.4  PDB: D:4126-4179 UniProt: 127-180           --------------------------------------------------------------------------------------Exon 1.7  PDB: D:4266-4332 UniProt: 267-333                        ------------------------------- Transcript 1 (2)
                1fdj D 4001 AHRFPALTPEQKKELSDIAQRIVANGKGILAADESVGTMGNRLQRIKVENSEENRRQFREILFTVDNSINQSIGGVILFHETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKETTIQGLDGLSERCAQYKKDGVDFGKWRAVLRIADQCPSSLAIQENANTLARYASICQQNGLVPIVEPEVIPDGDHDLEHCQYVTEKVLAAVYKALNDHHVYLEGTLLKPNMVTAGHACTKKYTPEQVAMATVTALHRTVPAAVPGICFLSGGMSEEDATLNLNAINLCPLPKPWKLSFSYGRALQASALAAWGGKAENKKATQEAFMKRAVVNCQAAKGQYVHTGSSGAASTQSLFTASYTY 4363
                                  4010      4020      4030      4040      4050      4060      4070      4080      4090      4100      4110      4120      4130      4140      4150      4160      4170      4180      4190      4200      4210      4220      4230      4240      4250      4260      4270      4280      4290      4300      4310      4320      4330      4340      4350      4360

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Aldolase (457)

Family: Class I aldolase (182)

Protein domain: Fructose-1,6-bisphosphate aldolase (39)

Rabbit (Oryctolagus cuniculus), liver isozyme [TaxId: 9986] (1)

1a	d1fdja_	A:
1b	d1fdjb_	B:
1c	d1fdjc_	C:
1d	d1fdjd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Aldolase class I (887)

Rabbit (Oryctolagus cuniculus) (27)

1a	1fdjA00	A:1001-1363
1b	1fdjB00	B:2001-2363
1c	1fdjC00	C:3001-3363
1d	1fdjD00	D:4001-4363

(no "Pfam Domain" information available for 1FDJ)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ALDOB_RABIT | P79226)

molecular function
	GO:0051117	ATPase binding	Interacting selectively and non-covalently with an ATPase, any enzyme that catalyzes the hydrolysis of ATP.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0008092	cytoskeletal protein binding	Interacting selectively and non-covalently with any protein component of any cytoskeleton (actin, microtubule, or intermediate filament cytoskeleton).
	GO:0070061	fructose binding	Interacting selectively and non-covalently with the D- or L-enantiomer of fructose, the ketohexose arabino-hex-2-ulose.
	GO:0061609	fructose-1-phosphate aldolase activity	Catalysis of the reaction: D-fructose-1-phosphate = dihydroxyacetone phosphate + D-glyceraldehyde.
	GO:0004332	fructose-bisphosphate aldolase activity	Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde-3-phosphate.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
	GO:0006116	NADH oxidation	A metabolic process that results in the oxidation of reduced nicotinamide adenine dinucleotide, NADH, to the oxidized form, NAD.
	GO:0030388	fructose 1,6-bisphosphate metabolic process	The chemical reactions and pathways involving fructose 1,6-bisphosphate, also known as FBP. The D enantiomer is a metabolic intermediate in glycolysis and gluconeogenesis.
	GO:0006000	fructose metabolic process	The chemical reactions and pathways involving fructose, the ketohexose arabino-2-hexulose. Fructose exists in a open chain form or as a ring compound. D-fructose is the sweetest of the sugars and is found free in a large number of fruits and honey.
	GO:0006096	glycolytic process	The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
	GO:0032781	positive regulation of ATPase activity	Any process that activates or increases the rate of ATP hydrolysis by an ATPase.
	GO:0070072	vacuolar proton-transporting V-type ATPase complex assembly	The aggregation, arrangement and bonding together of a vacuolar proton-transporting V-type ATPase complex, proton-transporting two-sector ATPase complex that couples ATP hydrolysis to the transport of protons across the vacuolar membrane.
cellular component
	GO:0034451	centriolar satellite	A small (70-100 nm) cytoplasmic granule that contains a number of centrosomal proteins; centriolar satellites traffic toward microtubule minus ends and are enriched near the centrosome.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005856	cytoskeleton	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005815	microtubule organizing center	An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		13P	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		2FP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		G3P	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Cys A:1157 - Pro A:1158	[ RasMol ]
		Cys B:2157 - Pro B:2158	[ RasMol ]
		Cys C:3157 - Pro C:3158	[ RasMol ]
		Cys D:4157 - Pro D:4158	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1fdj
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	ALDOB_RABIT \| P79226
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	4.1.2.13
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	ALDOB_RABIT \| P79226
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Entries Sharing at Least One Protein Chain" available for 1FDJ)

1ado	FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE FROM RABBIT MUSCLE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 11)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (8, 32)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (1, 4)

Pfam Domains (0, 0)

Gene Ontology (19, 19)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File