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1FDJ
Asym. Unit
Info
Asym.Unit (311 KB)
Biol.Unit 1 (299 KB)
Biol.Unit 2 (305 KB)
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(1)
Title
:
FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE FROM RABBIT LIVER
Authors
:
N. S. Blom, A. White, J. Sygusch
Date
:
20 Jul 00 (Deposition) - 25 Jul 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (2x)
Biol. Unit 2: C,D (2x)
Keywords
:
Aldolase, Lyase (Aldehyde), Schiff Base, Glycolysis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. S. Blom, A. White, J. Sygusch
Reaction Intermediates Of Rabbit Liver D-Fructose 1, 6-Bisphosphate Aldolase
To Be Published
(for further references see the
PDB file header
)
[
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]
Hetero Components
(4, 11)
Info
All Hetero Components
1a: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pa)
1b: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pb)
1c: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pc)
1d: 1,3-DIHYDROXYACETONEPHOSPHATE (13Pd)
2a: 1,6-FRUCTOSE DIPHOSPHATE (LINEAR F... (2FPa)
2b: 1,6-FRUCTOSE DIPHOSPHATE (LINEAR F... (2FPb)
3a: SN-GLYCEROL-3-PHOSPHATE (G3Pa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
13P
4
Ligand/Ion
1,3-DIHYDROXYACETONEPHOSPHATE
2
2FP
2
Ligand/Ion
1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)
3
G3P
1
Ligand/Ion
SN-GLYCEROL-3-PHOSPHATE
4
SO4
4
Ligand/Ion
SULFATE ION
[
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]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:1258 , HOH A:5733 , LYS B:2012 , HOH B:6216
BINDING SITE FOR RESIDUE SO4 A 5000
02
AC2
SOFTWARE
ARG A:1042 , LYS A:1107 , LYS A:1146 , ARG A:1148 , GLU A:1187 , GLU A:1189 , SER A:1271 , GLY A:1272 , GLY A:1273 , GLY A:1302 , ARG A:1303 , HOH A:5148 , HOH A:5209 , HOH A:5210 , HOH A:5303 , HOH A:5306 , HOH A:5458 , HOH A:5626 , HOH A:5629 , HOH A:5682 , HOH A:5708 , HOH A:5709 , HOH A:5710 , HOH A:5711 , HOH A:5713 , HOH A:5714 , HOH A:5715 , HOH A:5716 , HOH A:5717
BINDING SITE FOR RESIDUE 2FP A 5001
03
AC3
SOFTWARE
LYS A:1012 , GLN B:2202 , ARG B:2258 , HOH B:6004 , HOH B:6034 , HOH B:6540
BINDING SITE FOR RESIDUE SO4 B 6000
04
AC4
SOFTWARE
ASP B:2033 , LYS B:2107 , LYS B:2146 , ARG B:2148 , GLU B:2187 , GLU B:2189 , LYS B:2229 , LEU B:2270 , SER B:2271 , GLY B:2272 , GLY B:2273 , SER B:2300 , GLY B:2302 , ARG B:2303 , 13P B:6002 , G3P B:6003 , HOH B:6781 , HOH B:6783 , HOH B:6785 , HOH B:6787 , HOH B:6788 , HOH B:6793 , HOH B:6795 , HOH B:6797 , HOH B:6799 , HOH B:6800
BINDING SITE FOR RESIDUE 2FP B 6001
05
AC5
SOFTWARE
ALA B:2031 , LYS B:2229 , LEU B:2270 , SER B:2271 , GLY B:2273 , SER B:2300 , TYR B:2301 , GLY B:2302 , ARG B:2303 , 2FP B:6001 , HOH B:6784 , HOH B:6786 , HOH B:6788 , HOH B:6793 , HOH B:6800
BINDING SITE FOR RESIDUE 13P B 6002
06
AC6
SOFTWARE
THR B:2038 , LYS B:2146 , ARG B:2148 , 2FP B:6001 , HOH B:6315 , HOH B:6373 , HOH B:6503 , HOH B:6781 , HOH B:6783 , HOH B:6785 , HOH B:6788 , HOH B:6790 , HOH B:6792 , HOH B:6799
BINDING SITE FOR RESIDUE G3P B 6003
07
AC7
SOFTWARE
GLN C:3202 , ARG C:3258 , HOH C:7098 , LYS D:4012
BINDING SITE FOR RESIDUE SO4 C 7000
08
AC8
SOFTWARE
ALA C:3031 , ASP C:3033 , GLU C:3034 , LYS C:3146 , LYS C:3229 , SER C:3271 , GLY C:3272 , GLY C:3273 , GLY C:3302 , ARG C:3303 , HOH C:7702 , HOH C:7703 , HOH C:7890 , HOH C:7892 , HOH C:7893 , HOH C:7894 , HOH C:7895 , HOH C:7896 , HOH C:7898 , HOH C:7901
BINDING SITE FOR RESIDUE 13P C 7001
09
AC9
SOFTWARE
LYS C:3012 , GLN D:4202 , THR D:4254 , ARG D:4258 , HOH D:8047 , HOH D:8048
BINDING SITE FOR RESIDUE SO4 D 8000
10
BC1
SOFTWARE
ALA D:4031 , ASP D:4033 , GLU D:4034 , ARG D:4042 , SER D:4271 , GLY D:4272 , GLY D:4273 , GLY D:4302 , ARG D:4303 , TYR D:4363 , HOH D:8091 , HOH D:8916 , HOH D:8918 , HOH D:8920 , HOH D:8922 , HOH D:8925 , HOH D:8927 , HOH D:8928
BINDING SITE FOR RESIDUE 13P D 8001
11
BC2
SOFTWARE
ARG D:4042 , GLU D:4187 , LEU D:4270 , SER D:4271 , GLY D:4272 , GLY D:4273 , GLY D:4302 , ARG D:4303 , TYR D:4363 , HOH D:8693 , HOH D:8887 , HOH D:8915 , HOH D:8918 , HOH D:8919 , HOH D:8920 , HOH D:8922 , HOH D:8924 , HOH D:8928
BINDING SITE FOR RESIDUE 13P D 8002
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ALDOLASE_CLASS_I (A:1221-1231,B:2221-2231,C:3221-323...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOLASE_CLASS_I
PS00158
Fructose-bisphosphate aldolase class-I active site.
ALDOB_RABIT
222-232
4
A:1221-1231
B:2221-2231
C:3221-3231
D:4221-4231
[
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]
Exons
(8, 32)
Info
All Exons
Exon 1.1 (A:1001-1037 | B:2001-2037 | C:3001...)
Exon 1.2 (A:1037-1107 | B:2037-2107 | C:3037...)
Exon 1.3 (A:1108-1126 | B:2108-2126 | C:3108...)
Exon 1.4 (A:1126-1179 | B:2126-2179 | C:3126...)
Exon 1.5 (A:1180-1207 | B:2180-2207 | C:3180...)
Exon 1.6 (A:1208-1266 | B:2208-2266 | C:3208...)
Exon 1.7 (A:1266-1332 | B:2266-2332 | C:3266...)
Exon 1.8 (A:1333-1363 | B:2333-2363 | C:3333...)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/1.8
9: Boundary 1.8/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSOCUT00000014943
1
ENSOCUE00000274951
chr1:
11574697-11574808
112
ALDOB_RABIT
1-38
38
4
A:1001-1037
B:2001-2037
C:3001-3037
D:4001-4037
37
37
37
37
1.2
ENSOCUT00000014943
2
ENSOCUE00000174466
chr1:
11575564-11575775
212
ALDOB_RABIT
38-108
71
4
A:1037-1107
B:2037-2107
C:3037-3107
D:4037-4107
71
71
71
71
1.3
ENSOCUT00000014943
3
ENSOCUE00000174472
chr1:
11576543-11576597
55
ALDOB_RABIT
109-127
19
4
A:1108-1126
B:2108-2126
C:3108-3126
D:4108-4126
19
19
19
19
1.4
ENSOCUT00000014943
4
ENSOCUE00000174476
chr1:
11577340-11577500
161
ALDOB_RABIT
127-180
54
4
A:1126-1179
B:2126-2179
C:3126-3179
D:4126-4179
54
54
54
54
1.5
ENSOCUT00000014943
5
ENSOCUE00000174481
chr1:
11578387-11578470
84
ALDOB_RABIT
181-208
28
4
A:1180-1207
B:2180-2207
C:3180-3207
D:4180-4207
28
28
28
28
1.6
ENSOCUT00000014943
6
ENSOCUE00000313548
chr1:
11579777-11579951
175
ALDOB_RABIT
209-267
59
4
A:1208-1266
B:2208-2266
C:3208-3266
D:4208-4266
59
59
59
59
1.7
ENSOCUT00000014943
7
ENSOCUE00000174489
chr1:
11580363-11580562
200
ALDOB_RABIT
267-333
67
4
A:1266-1332
B:2266-2332
C:3266-3332
D:4266-4332
67
67
67
67
1.8
ENSOCUT00000014943
8
ENSOCUE00000174491
chr1:
11583119-11583255
137
ALDOB_RABIT
334-364
31
4
A:1333-1363
B:2333-2363
C:3333-3363
D:4333-4363
31
31
31
31
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1fdja_ (A:)
1b: SCOP_d1fdjb_ (B:)
1c: SCOP_d1fdjc_ (C:)
1d: SCOP_d1fdjd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class I aldolase
(182)
Protein domain
:
Fructose-1,6-bisphosphate aldolase
(39)
Rabbit (Oryctolagus cuniculus), liver isozyme [TaxId: 9986]
(1)
1a
d1fdja_
A:
1b
d1fdjb_
B:
1c
d1fdjc_
C:
1d
d1fdjd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1fdjA00 (A:1001-1363)
1b: CATH_1fdjB00 (B:2001-2363)
1c: CATH_1fdjC00 (C:3001-3363)
1d: CATH_1fdjD00 (D:4001-4363)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Rabbit (Oryctolagus cuniculus)
(27)
1a
1fdjA00
A:1001-1363
1b
1fdjB00
B:2001-2363
1c
1fdjC00
C:3001-3363
1d
1fdjD00
D:4001-4363
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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