1F3T - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF TRYPANOSOMA BRUCEI ORNITHINE DECARBOXYLASE (ODC) COMPLEXED WITH PUTRESCINE, ODC'S REACTION PRODUCT.

Authors :   L. K. Jackson, H. B. Brooks, A. L. Osterman, E. J. Goldsmith, M. A. Philli

Date :   06 Jun 00 (Deposition) - 22 Nov 00 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Beta-Alpha-Barrel, Modified Greek Key Beta-Sheet, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. K. Jackson, H. B. Brooks, A. L. Osterman, E. J. Goldsmith, M. A. Phillips
Altering The Reaction Specificity Of Eukaryotic Ornithine Decarboxylase.
Biochemistry V. 39 11247 2000
PubMed-ID: 10985770 | Reference-DOI: 10.1021/BI001209S

Molecule 1 - ORNITHINE DECARBOXYLASE
	Chains	:	A, B, C, D
	EC Number	:	4.1.1.17
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	TRYPANOSOMA BRUCEI
	Organism Taxid	:	5691
	Other Details	:	MODIFIED PET-11D PLASMID WITH HIS6-TAG, TEV PROTEASE SITE AND T7 PROMOTOR. HIS6-TAG WAS CLEAVED.
	Synonym	:	ODC

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	PLP	4	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE
2	PUT	4	Ligand/Ion	1,4-DIAMINOBUTANE

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	PLP	2	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE
2	PUT	2	Ligand/Ion	1,4-DIAMINOBUTANE

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	PLP	2	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE
2	PUT	2	Ligand/Ion	1,4-DIAMINOBUTANE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:69 , ARG A:154 , HIS A:197 , SER A:200 , GLY A:237 , GLU A:274 , GLY A:276 , ARG A:277 , TYR A:389 , HOH A:507 , HOH A:564 , HOH A:676 , PUT A:1002 , CYS B:360	BINDING SITE FOR RESIDUE PLP A 1001
2	AC2	SOFTWARE	TYR A:331 , ASP A:332 , TYR A:389 , HOH A:679 , PLP A:1001 , CYS B:360 , ASP B:361	BINDING SITE FOR RESIDUE PUT A 1002
3	AC3	SOFTWARE	CYS A:360 , LYS B:69 , ARG B:154 , HIS B:197 , SER B:200 , GLY B:236 , GLY B:237 , GLU B:274 , GLY B:276 , ARG B:277 , TYR B:389 , HOH B:515 , HOH B:851 , HOH B:877 , PUT B:1004	BINDING SITE FOR RESIDUE PLP B 1003
4	AC4	SOFTWARE	CYS A:360 , TYR B:331 , ASP B:332 , HOH B:618 , PLP B:1003	BINDING SITE FOR RESIDUE PUT B 1004
5	AC5	SOFTWARE	LYS C:69 , ASP C:88 , ARG C:154 , HIS C:197 , SER C:200 , GLY C:236 , GLY C:237 , GLU C:274 , GLY C:276 , ARG C:277 , TYR C:389 , HOH C:544 , HOH C:582 , PUT C:1006 , CYS D:360	BINDING SITE FOR RESIDUE PLP C 1005
6	AC6	SOFTWARE	LYS C:69 , ARG C:277 , TYR C:331 , ASP C:332 , TYR C:389 , PLP C:1005 , CYS D:360 , HOH D:640	BINDING SITE FOR RESIDUE PUT C 1006
7	AC7	SOFTWARE	CYS C:360 , LYS D:69 , ARG D:154 , HIS D:197 , SER D:200 , GLY D:236 , GLY D:237 , GLU D:274 , GLY D:276 , ARG D:277 , TYR D:389 , HOH D:525 , HOH D:623 , HOH D:879 , PUT D:1008	BINDING SITE FOR RESIDUE PLP D 1007
8	AC8	SOFTWARE	CYS C:360 , TYR D:331 , ASP D:332 , HOH D:692 , PLP D:1007	BINDING SITE FOR RESIDUE PUT D 1008

(no "SS Bond" information available for 1F3T)

(no "Cis Peptide Bond" information available for 1F3T)

(no "SAP(SNP)/Variant" information available for 1F3T)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ODR_DC_2_1	PS00878	Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.	DCOR_TRYBB	64-82	4	A:66-84 B:66-84 C:66-84 D:66-84
2	ODR_DC_2_2	PS00879	Orn/DAP/Arg decarboxylases family 2 signature 2.	DCOR_TRYBB	220-237	4	A:222-239 B:222-239 C:222-239 D:222-239

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ODR_DC_2_1	PS00878	Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.	DCOR_TRYBB	64-82	2	A:66-84 B:66-84 - -
2	ODR_DC_2_2	PS00879	Orn/DAP/Arg decarboxylases family 2 signature 2.	DCOR_TRYBB	220-237	2	A:222-239 B:222-239 - -

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ODR_DC_2_1	PS00878	Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.	DCOR_TRYBB	64-82	2	- - C:66-84 D:66-84
2	ODR_DC_2_2	PS00879	Orn/DAP/Arg decarboxylases family 2 signature 2.	DCOR_TRYBB	220-237	2	- - C:222-239 D:222-239

(no "Exon" information available for 1F3T)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:378
 aligned with DCOR_TRYBB | P07805 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:409
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411         
           DCOR_TRYBB    12 RFLEGFNTRDALCKKISMNTCDEGDPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRISTDDSLARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKS 420
               SCOP domains d1f3ta1 A:14-43,A      :284-42d1f3ta2 A:44-283 Eukaryotic ornithine decarboxylase                                                                                                                                                                                             d1f3ta1 A:14-               43,A:284-422 Eukaryotic ornithine decarboxylase (ODC)                                                           SCOP domains
               CATH domains ---------------1f      3tA01    1f3tA02 A:46-279 Alanine racemase                                                                                                                                                                                                         1f3tA01 A:29-45,A               :280-409 Lyase, Ornithine Decarboxylase; Chain A, domain 1                                        ------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhh.------...eeeeehhhhhhhhhhhhhhh..eeeeee.hhh.hhhhhhhhhhh..eeee.hhhhhhhhhhh..hhh.eee.....hhhhhhhhhhh...eeee.hhhhhhhhhhhh...eeeee...----------.....hhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhhhhhhhhhhhh.....eee.............hhhhhhhhhhhhhhhhh......eeee..hhhhhh..eeeeeeeeeeee.---------------..eeeee.....hhhhhhhhh......ee.........eeeeeee........eeeeeeeee......eeee......hhhhh.hhhhh...eeeee......hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------ODR_DC_2_1         -----------------------------------------------------------------------------------------------------------------------------------------ODR_DC_2_2        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1f3t A  14 RFLEGFNTRDALCKKIS------GDPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIST----------VKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVT---------------QSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKS 422
                                    23      |  -   |    43        53        63        73        83        93       103       113       123       133       143       153   |     -    |  173       183       193       203       213       223       233       243       253       263       273       283       293  |      -       313       323       333       343       353       363       373       383       393       403       413         
                                           30     37                                                                                                                     157        168                                                                                                                             296             312

Chain B from PDB  Type:PROTEIN  Length:381
 aligned with DCOR_TRYBB | P07805 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:409
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411         
           DCOR_TRYBB    12 RFLEGFNTRDALCKKISMNTCDEGDPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRISTDDSLARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKS 420
               SCOP domains d1f3tb1 B:14-43,B      :284-42d1f3tb2 B:44-283 Eukaryotic ornithine decarboxylase                                                                                                                                                                                             d1f3tb1 B:14-               43,B:284-422 Eukaryotic ornithine decarboxylase (ODC)                                                           SCOP domains
               CATH domains ---------------1f      3tB01    1f3tB02 B:46-279 Alanine racemase                                                                                                                                                                                                         1f3tB01 B:29-45,B               :280-409 Lyase, Ornithine Decarboxylase; Chain A, domain 1                                        ------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhh.------...eeeeehhhhhhhhhhhhhhh..eeeeee.hhh.hhhhhhhhhhh..eeee.hhhhhhhhhhh..hhh.eee.....hhhhhhhhhhhh..eeee.hhhhhhhhhhhh...eeeee....-------.......hhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhhhhhh.....eee.............hhhhhhhhhhhhhhhhh......eeee..hhhhhh..eeeeeeeeeeee.---------------..eeeee.......hhhhhhh......ee.........eeeeeee........eeeeeeeee......eeee......hhhhh.hhhhh...eeeee....hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------ODR_DC_2_1         -----------------------------------------------------------------------------------------------------------------------------------------ODR_DC_2_2        --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1f3t B  14 RFLEGFNTRDALCKKIS------GDPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRISTD-------LSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVT---------------QSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKS 422
                                    23      |  -   |    43        53        63        73        83        93       103       113       123       133       143       153    |    -  |    173       183       193       203       213       223       233       243       253       263       273       283       293  |      -       313       323       333       343       353       363       373       383       393       403       413         
                                           30     37                                                                                                                      158     166                                                                                                                               296             312

Chain C from PDB  Type:PROTEIN  Length:370
 aligned with DCOR_TRYBB | P07805 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:396
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401      
           DCOR_TRYBB    12 RFLEGFNTRDALCKKISMNTCDEGDPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRISTDDSLARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVV 407
               SCOP domains d1f3tc1 C:14-43,C      :284-40d1f3tc2 C:44-283 Eukaryotic ornithine decarboxylase                                                                                                                                                                                             d1f3tc1 C:14-               43,C:284-409 Eukaryotic ornithine decarboxylase (ODC)                                              SCOP domains
               CATH domains ---------------1f      3tC01    1f3tC02 C:46-279 Alanine racemase                                                                                                                                                                                                         1f3tC01 C:29-45,C               :280-406 Lyase, Ornithine Decarboxylase; Chain A, domain 1                                     --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhh.------...eeeeehhhhhhhhhhhhhhh..eeeeee.hhh.hhhhhhhhhhh..eeee.hhhhhhhhhhh..hhh.eee.....hhhhhhhhhhh...eeee.hhhhhhhhhhhh...eeeee.....-----........hhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhhhhhhhhhhhh.....eee.............hhhhhhhhhhhhhhhhh......eeee..hhhhhh..eeeeeeeeeeee.---------------..eeeee.....hhhhhhhhh......ee.........eeeeeee........eeeeeeeee......eeee......hhhhh.hhhhh...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------ODR_DC_2_1         -----------------------------------------------------------------------------------------------------------------------------------------ODR_DC_2_2        -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f3t C  14 RFLEGFNTRDALCKKIS------GDPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRISTDD-----RLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVT---------------QSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVV 409
                                    23      |  -   |    43        53        63        73        83        93       103       113       123       133       143       153     |   - |     173       183       193       203       213       223       233       243       253       263       273       283       293  |      -       313       323       333       343       353       363       373       383       393       403      
                                           30     37                                                                                                                       159   165                                                                                                                                296             312

Chain D from PDB  Type:PROTEIN  Length:367
 aligned with DCOR_TRYBB | P07805 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:396
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401      
           DCOR_TRYBB    12 RFLEGFNTRDALCKKISMNTCDEGDPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRISTDDSLARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVV 407
               SCOP domains d1f3td1 D:14-43,D      :284-40d1f3td2 D:44-283 Eukaryotic ornithine decarboxylase                                                                                                                                                                                             d1f3td1 D:14-               43,D:284-409 Eukaryotic ornithine decarboxylase (ODC)                                              SCOP domains
               CATH domains ---------------1f      3tD01    1f3tD02 D:46-279 Alanine racemase                                                                                                                                                                                                         1f3tD01 D:29-45,D               :280-406 Lyase, Ornithine Decarboxylase; Chain A, domain 1                                     --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhh.------...eeeeehhhhhhhhhhhhhhh..eeeeee.hhh.hhhhhhhhhhhh.eeee.hhhhhhhhhhh..hhh.eee.....hhhhhhhhhhhh..eeee.hhhhhhhhhhhh...eeeee...--------.......hhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhhhhhhhhhhhh.....eee.............hhhhhhhhhhhhhhhhh......eeee..hhhhhh..eeeeeeeeeeee.---------------..eeeee.......hhhhhhh......ee.........eeeeeee........eeeeeeeee......eeee......hhhhh.hhhhh...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------ODR_DC_2_1         -----------------------------------------------------------------------------------------------------------------------------------------ODR_DC_2_2        -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1f3t D  14 RFLEGFNTRDALCKKIS------GDPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRIST--------LSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVT---------------QSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVV 409
                                    23      |  -   |    43        53        63        73        83        93       103       113       123       133       143       153   |     -  |    173       183       193       203       213       223       233       243       253       263       273       283       293  |      -       313       323       333       343       353       363       373       383       393       403      
                                           30     37                                                                                                                     157      166                                                                                                                               296             312

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Domain of alpha and beta subunits of F1 ATP synthase-like (89)

Superfamily: Alanine racemase C-terminal domain-like (25)

Family: Eukaryotic ODC-like (13)

Protein domain: Eukaryotic ornithine decarboxylase (ODC) (7)

Trypanosome (Trypanosoma brucei) [TaxId: 5691] (5)

1a	d1f3ta1	A:14-43,A:284-422
1b	d1f3tb1	B:14-43,B:284-422
1c	d1f3tc1	C:14-43,C:284-409
1d	d1f3td1	D:14-43,D:284-409

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: PLP-binding barrel (27)

Family: Alanine racemase-like, N-terminal domain (25)

Protein domain: Eukaryotic ornithine decarboxylase (7)

Trypanosome (Trypanosoma brucei) [TaxId: 5691] (5)

2a	d1f3ta2	A:44-283
2b	d1f3tb2	B:44-283
2c	d1f3tc2	C:44-283
2d	d1f3td2	D:44-283

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Alanine racemase (53)

Trypanosoma brucei. Organism_taxid: 5691. (3)

1a	1f3tA02	A:46-279
1b	1f3tD02	D:46-279
1c	1f3tB02	B:46-279
1d	1f3tC02	C:46-279

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: Lyase, Ornithine Decarboxylase; Chain A, domain 1 (47)

Homologous Superfamily: Lyase, Ornithine Decarboxylase; Chain A, domain 1 (47)

Trypanosoma brucei. Organism_taxid: 5691. (3)

2a	1f3tA01	A:29-45,A:280-409
2b	1f3tB01	B:29-45,B:280-409
2c	1f3tD01	D:29-45,D:280-406
2d	1f3tC01	C:29-45,C:280-406

(no "Pfam Domain" information available for 1F3T)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (DCOR_TRYBB | P07805)

molecular function
	GO:0016831	carboxy-lyase activity	Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0004586	ornithine decarboxylase activity	Catalysis of the reaction: L-ornithine + H(+) = CO(2) + putrescine.
biological process
	GO:0006596	polyamine biosynthetic process	The chemical reactions and pathways resulting in the formation of polyamines, any organic compound containing two or more amino groups.
	GO:0033387	putrescine biosynthetic process from ornithine	The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane by decarboxylation of ornithine.

Asymmetric Unit
	Complete Structure
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	1f3t
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	4.1.1.17
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UniProtKB/Swiss-Prot
	DCOR_TRYBB \| P07805	:	1qu4 1szr 2tod

1qu4	NATIVE STRUCTURE OF ORNITHINE DECARBOXYLASE FROM TRYPANOSOMA BRUCEI. 1QU4 CONTAINS AN UNCOMPLEXED VERSION OF THE SAME PROTEIN FROM THE SAME SPECIES.
2tod	STRUCTURE OF A K69A MUTANT OF ORNITHINE DECARBOXYLASE FROM TRYPANOSOMA BRUCEI COMPLEXED WITH DMO, A COVALENTLY-BOUND INHIBITOR. 2TOD CONTAINS A MUTANT OF THE SAME PROTEIN FROM THE SAME SPECIES COMPLEXED WITH DMO, A COVALENTLY-BOUND INHIBITOR.
7odc	7ODC CONTAINS THE STRUCTURE OF A HOMOLOGUE FROM MUS MUSCULUS (NOT COMPLEXED).

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 8)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 8)

CATH Domains (2, 8)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File