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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF TRYPANOSOMA BRUCEI ORNITHINE DECARBOXYL COMPLEXED WITH PUTRESCINE, ODC'S REACTION PRODUCT.
Keywords BETA-ALPHA-BARREL, MODIFIED GREEK KEY BETA-SHEET, LYASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1F3T     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ORNITHINE DECARBOXYLASE  A 378 2965 0
2  Protein   ORNITHINE DECARBOXYLASE  B 381 2987 0
3  Protein   ORNITHINE DECARBOXYLASE  C 370 2906 0
4  Protein   ORNITHINE DECARBOXYLASE  D 367 2879 0
5  Ligand   ORNITHINE DECARBOXYLASE  A 2 0 21
6  Ligand   ORNITHINE DECARBOXYLASE  B 2 0 21
7  Ligand   ORNITHINE DECARBOXYLASE  C 2 0 21
8  Ligand   ORNITHINE DECARBOXYLASE  D 2 0 21
9 Water     380 0 380
total       1884 11737 464
Proteins
Unit 1 ARG14 PHE15 LEU16 GLU17 GLY18 PHE19 ASN20 THR21 ARG22 ASP23 ALA24 LEU25 CYS26 LYS27 LYS28 ILE29 SER30 GLY37 ASP38 PRO39 PHE40 PHE41 VAL42 ALA43 ASP44 LEU45 GLY46 ASP47 ILE48 VAL49 ARG50 LYS51 HIS52 GLU53 THR54 TRP55 LYS56 LYS57 CYS58 LEU59 PRO60 ARG61 VAL62 THR63 PRO64 PHE65 TYR66 ALA67 VAL68 LYS69 CYS70 ASN71 ASP72 ASP73 TRP74 ARG75 VAL76 LEU77 GLY78 THR79 LEU80 ALA81 ALA82 LEU83 GLY84 THR85 GLY86 PHE87 ASP88 CYS89 ALA90 SER91 ASN92 THR93 GLU94 ILE95 GLN96 ARG97 VAL98 ARG99 GLY100 ILE101 GLY102 VAL103 PRO104 PRO105 GLU106 LYS107 ILE108 ILE109 TYR110 ALA111 ASN112 PRO113 CYS114 LYS115 GLN116 ILE117 SER118 HIS119 ILE120 ARG121 TYR122 ALA123 ARG124 ASP125 SER126 GLY127 VAL128 ASP129 VAL130 MET131 THR132 PHE133 ASP134 CYS135 VAL136 ASP137 GLU138 LEU139 GLU140 LYS141 VAL142 ALA143 LYS144 THR145 HIS146 PRO147 LYS148 ALA149 LYS150 MET151 VAL152 LEU153 ARG154 ILE155 SER156 THR157 VAL168 LYS169 PHE170 GLY171 ALA172 LYS173 VAL174 GLU175 ASP176 CYS177 ARG178 PHE179 ILE180 LEU181 GLU182 GLN183 ALA184 LYS185 LYS186 LEU187 ASN188 ILE189 ASP190 VAL191 THR192 GLY193 VAL194 SER195 PHE196 HIS197 VAL198 GLY199 SER200 GLY201 SER202 THR203 ASP204 ALA205 SER206 THR207 PHE208 ALA209 GLN210 ALA211 ILE212 SER213 ASP214 SER215 ARG216 PHE217 VAL218 PHE219 ASP220 MET221 GLY222 THR223 GLU224 LEU225 GLY226 PHE227 ASN228 MET229 HIS230 ILE231 LEU232 ASP233 ILE234 GLY235 GLY236 GLY237 PHE238 PRO239 GLY240 THR241 ARG242 ASP243 ALA244 PRO245 LEU246 LYS247 PHE248 GLU249 GLU250 ILE251 ALA252 GLY253 VAL254 ILE255 ASN256 ASN257 ALA258 LEU259 GLU260 LYS261 HIS262 PHE263 PRO264 PRO265 ASP266 LEU267 LYS268 LEU269 THR270 ILE271 VAL272 ALA273 GLU274 PRO275 GLY276 ARG277 TYR278 TYR279 VAL280 ALA281 SER282 ALA283 PHE284 THR285 LEU286 ALA287 VAL288 ASN289 VAL290 ILE291 ALA292 LYS293 LYS294 VAL295 THR296 GLN312 SER313 PHE314 MET315 TYR316 TYR317 VAL318 ASN319 ASP320 GLY321 VAL322 TYR323 GLY324 SER325 PHE326 ASN327 CYS328 ILE329 LEU330 TYR331 ASP332 HIS333 ALA334 VAL335 VAL336 ARG337 PRO338 LEU339 PRO340 GLN341 ARG342 GLU343 PRO344 ILE345 PRO346 ASN347 GLU348 LYS349 LEU350 TYR351 PRO352 SER353 SER354 VAL355 TRP356 GLY357 PRO358 THR359 CYS360 ASP361 GLY362 LEU363 ASP364 GLN365 ILE366 VAL367 GLU368 ARG369 TYR370 TYR371 LEU372 PRO373 GLU374 MET375 GLN376 VAL377 GLY378 GLU379 TRP380 LEU381 LEU382 PHE383 GLU384 ASP385 MET386 GLY387 ALA388 TYR389 THR390 VAL391 VAL392 GLY393 THR394 SER395 SER396 PHE397 ASN398 GLY399 PHE400 GLN401 SER402 PRO403 THR404 ILE405 TYR406 TYR407 VAL408 VAL409 SER410 GLY411 LEU412 PRO413 ASP414 HIS415 VAL416 VAL417 ARG418 GLU419 LEU420 LYS421 SER422
Unit 2 ARG14 PHE15 LEU16 GLU17 GLY18 PHE19 ASN20 THR21 ARG22 ASP23 ALA24 LEU25 CYS26 LYS27 LYS28 ILE29 SER30 GLY37 ASP38 PRO39 PHE40 PHE41 VAL42 ALA43 ASP44 LEU45 GLY46 ASP47 ILE48 VAL49 ARG50 LYS51 HIS52 GLU53 THR54 TRP55 LYS56 LYS57 CYS58 LEU59 PRO60 ARG61 VAL62 THR63 PRO64 PHE65 TYR66 ALA67 VAL68 LYS69 CYS70 ASN71 ASP72 ASP73 TRP74 ARG75 VAL76 LEU77 GLY78 THR79 LEU80 ALA81 ALA82 LEU83 GLY84 THR85 GLY86 PHE87 ASP88 CYS89 ALA90 SER91 ASN92 THR93 GLU94 ILE95 GLN96 ARG97 VAL98 ARG99 GLY100 ILE101 GLY102 VAL103 PRO104 PRO105 GLU106 LYS107 ILE108 ILE109 TYR110 ALA111 ASN112 PRO113 CYS114 LYS115 GLN116 ILE117 SER118 HIS119 ILE120 ARG121 TYR122 ALA123 ARG124 ASP125 SER126 GLY127 VAL128 ASP129 VAL130 MET131 THR132 PHE133 ASP134 CYS135 VAL136 ASP137 GLU138 LEU139 GLU140 LYS141 VAL142 ALA143 LYS144 THR145 HIS146 PRO147 LYS148 ALA149 LYS150 MET151 VAL152 LEU153 ARG154 ILE155 SER156 THR157 ASP158 LEU166 SER167 VAL168 LYS169 PHE170 GLY171 ALA172 LYS173 VAL174 GLU175 ASP176 CYS177 ARG178 PHE179 ILE180 LEU181 GLU182 GLN183 ALA184 LYS185 LYS186 LEU187 ASN188 ILE189 ASP190 VAL191 THR192 GLY193 VAL194 SER195 PHE196 HIS197 VAL198 GLY199 SER200 GLY201 SER202 THR203 ASP204 ALA205 SER206 THR207 PHE208 ALA209 GLN210 ALA211 ILE212 SER213 ASP214 SER215 ARG216 PHE217 VAL218 PHE219 ASP220 MET221 GLY222 THR223 GLU224 LEU225 GLY226 PHE227 ASN228 MET229 HIS230 ILE231 LEU232 ASP233 ILE234 GLY235 GLY236 GLY237 PHE238 PRO239 GLY240 THR241 ARG242 ASP243 ALA244 PRO245 LEU246 LYS247 PHE248 GLU249 GLU250 ILE251 ALA252 GLY253 VAL254 ILE255 ASN256 ASN257 ALA258 LEU259 GLU260 LYS261 HIS262 PHE263 PRO264 PRO265 ASP266 LEU267 LYS268 LEU269 THR270 ILE271 VAL272 ALA273 GLU274 PRO275 GLY276 ARG277 TYR278 TYR279 VAL280 ALA281 SER282 ALA283 PHE284 THR285 LEU286 ALA287 VAL288 ASN289 VAL290 ILE291 ALA292 LYS293 LYS294 VAL295 THR296 GLN312 SER313 PHE314 MET315 TYR316 TYR317 VAL318 ASN319 ASP320 GLY321 VAL322 TYR323 GLY324 SER325 PHE326 ASN327 CYS328 ILE329 LEU330 TYR331 ASP332 HIS333 ALA334 VAL335 VAL336 ARG337 PRO338 LEU339 PRO340 GLN341 ARG342 GLU343 PRO344 ILE345 PRO346 ASN347 GLU348 LYS349 LEU350 TYR351 PRO352 SER353 SER354 VAL355 TRP356 GLY357 PRO358 THR359 CYS360 ASP361 GLY362 LEU363 ASP364 GLN365 ILE366 VAL367 GLU368 ARG369 TYR370 TYR371 LEU372 PRO373 GLU374 MET375 GLN376 VAL377 GLY378 GLU379 TRP380 LEU381 LEU382 PHE383 GLU384 ASP385 MET386 GLY387 ALA388 TYR389 THR390 VAL391 VAL392 GLY393 THR394 SER395 SER396 PHE397 ASN398 GLY399 PHE400 GLN401 SER402 PRO403 THR404 ILE405 TYR406 TYR407 VAL408 VAL409 SER410 GLY411 LEU412 PRO413 ASP414 HIS415 VAL416 VAL417 ARG418 GLU419 LEU420 LYS421 SER422
Unit 3 ARG14 PHE15 LEU16 GLU17 GLY18 PHE19 ASN20 THR21 ARG22 ASP23 ALA24 LEU25 CYS26 LYS27 LYS28 ILE29 SER30 GLY37 ASP38 PRO39 PHE40 PHE41 VAL42 ALA43 ASP44 LEU45 GLY46 ASP47 ILE48 VAL49 ARG50 LYS51 HIS52 GLU53 THR54 TRP55 LYS56 LYS57 CYS58 LEU59 PRO60 ARG61 VAL62 THR63 PRO64 PHE65 TYR66 ALA67 VAL68 LYS69 CYS70 ASN71 ASP72 ASP73 TRP74 ARG75 VAL76 LEU77 GLY78 THR79 LEU80 ALA81 ALA82 LEU83 GLY84 THR85 GLY86 PHE87 ASP88 CYS89 ALA90 SER91 ASN92 THR93 GLU94 ILE95 GLN96 ARG97 VAL98 ARG99 GLY100 ILE101 GLY102 VAL103 PRO104 PRO105 GLU106 LYS107 ILE108 ILE109 TYR110 ALA111 ASN112 PRO113 CYS114 LYS115 GLN116 ILE117 SER118 HIS119 ILE120 ARG121 TYR122 ALA123 ARG124 ASP125 SER126 GLY127 VAL128 ASP129 VAL130 MET131 THR132 PHE133 ASP134 CYS135 VAL136 ASP137 GLU138 LEU139 GLU140 LYS141 VAL142 ALA143 LYS144 THR145 HIS146 PRO147 LYS148 ALA149 LYS150 MET151 VAL152 LEU153 ARG154 ILE155 SER156 THR157 ASP158 ASP159 ARG165 LEU166 SER167 VAL168 LYS169 PHE170 GLY171 ALA172 LYS173 VAL174 GLU175 ASP176 CYS177 ARG178 PHE179 ILE180 LEU181 GLU182 GLN183 ALA184 LYS185 LYS186 LEU187 ASN188 ILE189 ASP190 VAL191 THR192 GLY193 VAL194 SER195 PHE196 HIS197 VAL198 GLY199 SER200 GLY201 SER202 THR203 ASP204 ALA205 SER206 THR207 PHE208 ALA209 GLN210 ALA211 ILE212 SER213 ASP214 SER215 ARG216 PHE217 VAL218 PHE219 ASP220 MET221 GLY222 THR223 GLU224 LEU225 GLY226 PHE227 ASN228 MET229 HIS230 ILE231 LEU232 ASP233 ILE234 GLY235 GLY236 GLY237 PHE238 PRO239 GLY240 THR241 ARG242 ASP243 ALA244 PRO245 LEU246 LYS247 PHE248 GLU249 GLU250 ILE251 ALA252 GLY253 VAL254 ILE255 ASN256 ASN257 ALA258 LEU259 GLU260 LYS261 HIS262 PHE263 PRO264 PRO265 ASP266 LEU267 LYS268 LEU269 THR270 ILE271 VAL272 ALA273 GLU274 PRO275 GLY276 ARG277 TYR278 TYR279 VAL280 ALA281 SER282 ALA283 PHE284 THR285 LEU286 ALA287 VAL288 ASN289 VAL290 ILE291 ALA292 LYS293 LYS294 VAL295 THR296 GLN312 SER313 PHE314 MET315 TYR316 TYR317 VAL318 ASN319 ASP320 GLY321 VAL322 TYR323 GLY324 SER325 PHE326 ASN327 CYS328 ILE329 LEU330 TYR331 ASP332 HIS333 ALA334 VAL335 VAL336 ARG337 PRO338 LEU339 PRO340 GLN341 ARG342 GLU343 PRO344 ILE345 PRO346 ASN347 GLU348 LYS349 LEU350 TYR351 PRO352 SER353 SER354 VAL355 TRP356 GLY357 PRO358 THR359 CYS360 ASP361 GLY362 LEU363 ASP364 GLN365 ILE366 VAL367 GLU368 ARG369 TYR370 TYR371 LEU372 PRO373 GLU374 MET375 GLN376 VAL377 GLY378 GLU379 TRP380 LEU381 LEU382 PHE383 GLU384 ASP385 MET386 GLY387 ALA388 TYR389 THR390 VAL391 VAL392 GLY393 THR394 SER395 SER396 PHE397 ASN398 GLY399 PHE400 GLN401 SER402 PRO403 THR404 ILE405 TYR406 TYR407 VAL408 VAL409
Unit 4 ARG14 PHE15 LEU16 GLU17 GLY18 PHE19 ASN20 THR21 ARG22 ASP23 ALA24 LEU25 CYS26 LYS27 LYS28 ILE29 SER30 GLY37 ASP38 PRO39 PHE40 PHE41 VAL42 ALA43 ASP44 LEU45 GLY46 ASP47 ILE48 VAL49 ARG50 LYS51 HIS52 GLU53 THR54 TRP55 LYS56 LYS57 CYS58 LEU59 PRO60 ARG61 VAL62 THR63 PRO64 PHE65 TYR66 ALA67 VAL68 LYS69 CYS70 ASN71 ASP72 ASP73 TRP74 ARG75 VAL76 LEU77 GLY78 THR79 LEU80 ALA81 ALA82 LEU83 GLY84 THR85 GLY86 PHE87 ASP88 CYS89 ALA90 SER91 ASN92 THR93 GLU94 ILE95 GLN96 ARG97 VAL98 ARG99 GLY100 ILE101 GLY102 VAL103 PRO104 PRO105 GLU106 LYS107 ILE108 ILE109 TYR110 ALA111 ASN112 PRO113 CYS114 LYS115 GLN116 ILE117 SER118 HIS119 ILE120 ARG121 TYR122 ALA123 ARG124 ASP125 SER126 GLY127 VAL128 ASP129 VAL130 MET131 THR132 PHE133 ASP134 CYS135 VAL136 ASP137 GLU138 LEU139 GLU140 LYS141 VAL142 ALA143 LYS144 THR145 HIS146 PRO147 LYS148 ALA149 LYS150 MET151 VAL152 LEU153 ARG154 ILE155 SER156 THR157 LEU166 SER167 VAL168 LYS169 PHE170 GLY171 ALA172 LYS173 VAL174 GLU175 ASP176 CYS177 ARG178 PHE179 ILE180 LEU181 GLU182 GLN183 ALA184 LYS185 LYS186 LEU187 ASN188 ILE189 ASP190 VAL191 THR192 GLY193 VAL194 SER195 PHE196 HIS197 VAL198 GLY199 SER200 GLY201 SER202 THR203 ASP204 ALA205 SER206 THR207 PHE208 ALA209 GLN210 ALA211 ILE212 SER213 ASP214 SER215 ARG216 PHE217 VAL218 PHE219 ASP220 MET221 GLY222 THR223 GLU224 LEU225 GLY226 PHE227 ASN228 MET229 HIS230 ILE231 LEU232 ASP233 ILE234 GLY235 GLY236 GLY237 PHE238 PRO239 GLY240 THR241 ARG242 ASP243 ALA244 PRO245 LEU246 LYS247 PHE248 GLU249 GLU250 ILE251 ALA252 GLY253 VAL254 ILE255 ASN256 ASN257 ALA258 LEU259 GLU260 LYS261 HIS262 PHE263 PRO264 PRO265 ASP266 LEU267 LYS268 LEU269 THR270 ILE271 VAL272 ALA273 GLU274 PRO275 GLY276 ARG277 TYR278 TYR279 VAL280 ALA281 SER282 ALA283 PHE284 THR285 LEU286 ALA287 VAL288 ASN289 VAL290 ILE291 ALA292 LYS293 LYS294 VAL295 THR296 GLN312 SER313 PHE314 MET315 TYR316 TYR317 VAL318 ASN319 ASP320 GLY321 VAL322 TYR323 GLY324 SER325 PHE326 ASN327 CYS328 ILE329 LEU330 TYR331 ASP332 HIS333 ALA334 VAL335 VAL336 ARG337 PRO338 LEU339 PRO340 GLN341 ARG342 GLU343 PRO344 ILE345 PRO346 ASN347 GLU348 LYS349 LEU350 TYR351 PRO352 SER353 SER354 VAL355 TRP356 GLY357 PRO358 THR359 CYS360 ASP361 GLY362 LEU363 ASP364 GLN365 ILE366 VAL367 GLU368 ARG369 TYR370 TYR371 LEU372 PRO373 GLU374 MET375 GLN376 VAL377 GLY378 GLU379 TRP380 LEU381 LEU382 PHE383 GLU384 ASP385 MET386 GLY387 ALA388 TYR389 THR390 VAL391 VAL392 GLY393 THR394 SER395 SER396 PHE397 ASN398 GLY399 PHE400 GLN401 SER402 PRO403 THR404 ILE405 TYR406 TYR407 VAL408 VAL409
Ligands
Unit 5 PLP1001 PUT1002
Unit 6 PLP1003 PUT1004
Unit 7 PLP1005 PUT1006
Unit 8 PLP1007 PUT1008
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany