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(-) Description

Title :  METHYLMALONYL-COA MUTASE H244A MUTANT
 
Authors :  P. R. Evans, N. H. Thoma
Date :  30 Apr 00  (Deposition) - 07 May 00  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.62
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Isomerase, Mutase, Intramolecular Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. H. Thoma, P. R. Evans, P. F. Leadlay
Protection Of Radical Intermediates At The Active Site Of Adenosylcobalamin-Dependent Methylmalonyl-Coa Mutase
Biochemistry V. 39 9213 2000
PubMed-ID: 10924114  |  Reference-DOI: 10.1021/BI0004302

(-) Compounds

Molecule 1 - METHYLMALONYL-COA MUTASE ALPHA CHAIN
    Chains: A, C
    EC Number: 5.4.99.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Gene: MUTA, MUTB
    Expression System Plasmid: PGP1-2, PMEX1
    Expression System Strain: K38
    Expression System Taxid: 562
    Fragment: WHOLE MOLECULE
    Mutation: YES
    Organism Scientific: PROPIONIBACTERIUM FREUDENREICHII SUBSP. SHERMANII
    Organism Taxid: 1752
    Other Details: CHAINS A AND C INCLUDE COENZYME B12, AND DESULPHO-COA. B12 IS PRESENT LARGELY AS REDUCED COB(II)ALAMIN, OR B12R
    Strain: NCIB 9885
 
Molecule 2 - METHYLMALONYL-COA MUTASE BETA CHAIN
    Chains: B, D
    EC Number: 5.4.99.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Gene: MUTA, MUTB
    Expression System Plasmid: PGP1-2, PMEX1
    Expression System Strain: K38
    Expression System Taxid: 562
    Fragment: WHOLE MOLECULE
    Organism Scientific: PROPIONIBACTERIUM FREUDENREICHII SUBSP. SHERMANII
    Organism Taxid: 1752
    Other Details: THE 2 GENES MUTA (BETA CHAIN) AND MUTB (ALPHA CHAIN) ARE COEXPRESSED FROM THE SAME PLASMID
    Strain: NCIB 9885

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1B122Ligand/IonCOBALAMIN
2DCA2Ligand/IonDESULFO-COENZYME A
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1B121Ligand/IonCOBALAMIN
2DCA1Ligand/IonDESULFO-COENZYME A
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1B121Ligand/IonCOBALAMIN
2DCA1Ligand/IonDESULFO-COENZYME A

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:89 , PHE A:117 , LEU A:119 , HIS A:122 , ALA A:139 , VAL A:206 , ARG A:207 , GLU A:247 , GLY A:333 , TRP A:334 , LEU A:336 , GLU A:370 , ALA A:371 , ALA A:373 , LEU A:374 , GLN A:454 , LEU A:602 , GLY A:609 , HIS A:610 , ASP A:611 , ARG A:612 , GLY A:613 , ILE A:617 , TYR A:621 , SER A:655 , LEU A:657 , GLY A:659 , GLY A:685 , GLY A:686 , VAL A:687 , TYR A:705 , THR A:706 , THR A:709 , SER A:714 , HOH A:2245 , HOH A:2437 , HOH A:2438 , HOH A:2439 , HOH A:2440 , HOH A:2441 , HOH A:2442 , HOH A:2443BINDING SITE FOR RESIDUE B12 A 800
2AC2SOFTWARETYR A:75 , THR A:77 , MET A:78 , PHE A:81 , ARG A:82 , THR A:85 , ARG A:87 , SER A:114 , SER A:164 , THR A:166 , THR A:195 , ASN A:236 , ARG A:283 , SER A:285 , ARG A:326 , THR A:327 , HIS A:328 , GLN A:361 , SER A:362 , HOH A:2112 , HOH A:2216 , HOH A:2217 , HOH A:2241 , HOH A:2444 , HOH A:2445 , HOH A:2446 , HOH A:2447 , HOH A:2448 , HOH A:2449 , HOH A:2450 , HOH A:2451 , HOH A:2452 , HOH A:2453 , VAL B:42 , ARG B:45BINDING SITE FOR RESIDUE DCA A 801
3AC3SOFTWARETYR C:89 , PHE C:117 , LEU C:119 , HIS C:122 , ALA C:139 , VAL C:206 , ARG C:207 , GLU C:247 , GLY C:333 , TRP C:334 , GLU C:370 , ALA C:371 , ALA C:373 , LEU C:374 , LEU C:602 , GLY C:609 , HIS C:610 , ASP C:611 , ARG C:612 , GLY C:613 , TYR C:621 , SER C:655 , LEU C:657 , GLY C:659 , GLY C:685 , GLY C:686 , VAL C:687 , TYR C:705 , THR C:706 , THR C:709 , HOH C:2109 , HOH C:2127 , HOH C:2162 , HOH C:2249 , HOH C:2458 , HOH C:2472 , HOH C:2473 , HOH C:2475 , HOH C:2476 , HOH C:2477BINDING SITE FOR RESIDUE B12 C 800
4AC4SOFTWARETYR C:75 , THR C:77 , MET C:78 , PHE C:81 , ARG C:82 , THR C:85 , ARG C:87 , TYR C:89 , SER C:114 , SER C:164 , THR C:166 , THR C:195 , ASN C:236 , ARG C:283 , SER C:285 , ARG C:326 , THR C:327 , HIS C:328 , GLN C:361 , SER C:362 , HOH C:2068 , HOH C:2075 , HOH C:2076 , HOH C:2108 , HOH C:2221 , HOH C:2222 , HOH C:2479 , HOH C:2480 , HOH C:2482 , HOH C:2484 , HOH C:2485 , HOH C:2486 , HOH C:2487 , HOH C:2488 , HOH C:2489 , HOH C:2490 , ARG D:45BINDING SITE FOR RESIDUE DCA C 801

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1E1C)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Pro A:68 -Pro A:69
2Ala B:91 -Pro B:92
3Pro C:68 -Pro C:69
4Ala D:91 -Pro D:92

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1E1C)

(-) PROSITE Motifs  (2, 6)

Asymmetric Unit (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1METMALONYL_COA_MUTASEPS00544 Methylmalonyl-CoA mutase signature.MUTA_PROFR377-402
 		  2B:377-402
D:377-402
MUTB_PROFR381-406
 		  2A:381-406
C:381-406
2B12_BINDINGPS51332 B12-binding domain profile.MUTB_PROFR597-728
 		  2A:597-728
C:597-728
Biological Unit 1 (2, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1METMALONYL_COA_MUTASEPS00544 Methylmalonyl-CoA mutase signature.MUTA_PROFR377-402
 		  1B:377-402
-
MUTB_PROFR381-406
 		  1A:381-406
-
2B12_BINDINGPS51332 B12-binding domain profile.MUTB_PROFR597-728
 		  1A:597-728
-
Biological Unit 2 (2, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1METMALONYL_COA_MUTASEPS00544 Methylmalonyl-CoA mutase signature.MUTA_PROFR377-402
 		  1-
D:377-402
MUTB_PROFR381-406
 		  1-
C:381-406
2B12_BINDINGPS51332 B12-binding domain profile.MUTB_PROFR597-728
 		  1-
C:597-728

(-) Exons   (0, 0)

(no "Exon" information available for 1E1C)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:727
 aligned with MUTB_PROFR | P11653 from UniProtKB/Swiss-Prot  Length:728

    Alignment length:727
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       
           MUTB_PROFR     2 STLPRFDSVDLGNAPVPADAARRFEELAAKAGTGEAWETAEQIPVGTLFNEDVYKDMDWLDTYAGIPPFVHGPYATMYAFRPWTIRQYAGFSTAKESNAFYRRNLAAGQKGLSVAFDLPTHRGYDSDNPRVAGDVGMAGVAIDSIYDMRELFAGIPLDQMSVSMTMNGAVLPILALYVVTAEEQGVKPEQLAGTIQNDILKEFMVRNTYIYPPQPSMRIISEIFAYTSANMPKWNSISISGYHMQEAGATADIEMAYTLADGVDYIRAGESVGLNVDQFAPRLSFFWGIGMNFFMEVAKLRAARMLWAKLVHQFGPKNPKSMSLRTHSQTSGWSLTAQDVYNNVVRTCIEAMAATQGHTQSLHTNSLDEAIALPTDFSARIARNTQLFLQQESGTTRVIDPWSGSAYVEELTWDLARKAWGHIQEVEKVGGMAKAIEKGIPKMRIEEAAARTQARIDSGRQPLIGVNKYRLEHEPPLDVLKVDNSTVLAEQKAKLVKLRAERDPEKVKAALDKITWAAGNPDDKDPDRNLLKLCIDAGRAMATVGEMSDALEKVFGRYTAQIRTISGVYSKEVKNTPEVEEARELVEEFEQAEGRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRASLDA 728
               SCOP domains d1e1ca1 A:2-560 Methylmalonyl-CoA mutase alpha subunit, domain 1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               d1e1ca2 A:561-728 Methylmalonyl-CoA mutase alpha subunit, C-terminal domain                                                                                              SCOP domains
               CATH domains ------------------------------------1e1cA01 A:38-559  [code=3.20.20.240, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ---1e1cA02 A:563-726  [code=3.40.50.280, no name defined]                                                                                                              -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.........hhhhhhhhhhhhhh.................hhhhhh....................hhhhhh...........hhhhhhhhhhhhhhh....eee..hhhhhh........hhhhh........hhhhhhhhh........eeee....hhhhhhhhhhhhhhhh..hhhhheeee..hhhhhhhh......hhhhhhhhhhhhhhhhhhhh.....eeeehhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.eeeeeee..hhhhhhhhhhhhhhhhhhhhhh....hhhhhh..eeeee..........hhhhhhhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...........hhhhhh..hhhhhhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhh.....eeeeee..hhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------METMALONYL_COA_MUTASE     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------B12_BINDING  PDB: A:597-728 UniProt: 597-728                                                                                         PROSITE (1)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1e1c A   2 STLPRFDSVDLGNAPVPADAARRFEELAAKAGTGEAWETAEQIPVGTLFNEDVYKDMDWLDTYAGIPPFVHGPYATMYAFRPWTIRQYAGFSTAKESNAFYRRNLAAGQKGLSVAFDLPTHRGYDSDNPRVAGDVGMAGVAIDSIYDMRELFAGIPLDQMSVSMTMNGAVLPILALYVVTAEEQGVKPEQLAGTIQNDILKEFMVRNTYIYPPQPSMRIISEIFAYTSANMPKWNSISISGYAMQEAGATADIEMAYTLADGVDYIRAGESVGLNVDQFAPRLSFFWGIGMNFFMEVAKLRAARMLWAKLVHQFGPKNPKSMSLRTHSQTSGWSLTAQDVYNNVVRTCIEAMAATQGHTQSLHTNSLDEAIALPTDFSARIARNTQLFLQQESGTTRVIDPWSGSAYVEELTWDLARKAWGHIQEVEKVGGMAKAIEKGIPKMRIEEAAARTQARIDSGRQPLIGVNKYRLEHEPPLDVLKVDNSTVLAEQKAKLVKLRAERDPEKVKAALDKITWAAGNPDDKDPDRNLLKLCIDAGRAMATVGEMSDALEKVFGRYTAQIRTISGVYSKEVKNTPEVEEARELVEEFEQAEGRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRASLDA 728
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       


Chain B from PDB  Type:PROTEIN  Length:619
 aligned with MUTA_PROFR | P11652 from UniProtKB/Swiss-Prot  Length:638

    Alignment length:619
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629         
           MUTA_PROFR    20 TLSLAGDFPKATEEQWEREVEKVLNRGRPPEKQLTFAECLKRLTVHTVDGIDIVPMYRPKDAPKKLGYPGVAPFTRGTTVRNGDMDAWDVRALHEDPDEKFTRKAILEGLERGVTSLLLRVDPDAIAPEHLDEVLSDVLLEMTKVEVFSRYDQGAAAEALVSVYERSDKPAKDLALNLGLDPIAFAALQGTEPDLTVLGDWVRRLAKFSPDSRAVTIDANIYHNAGAGDVAELAWALATGAEYVRALVEQGFTATEAFDTINFRVTATHDQFLTIARLRALREAWARIGEVFGVDEDKRGARQNAITSWRDVTREDPYVNILRGSIATFSASVGGAESITTLPFTQALGLPEDDFPLRIARNTGIVLAEEVNIGRVNDPAGGSYYVESLTRSLADAAWKEFQEVEKLGGMSKAVMTEHVTKVLDACNAERAKRLANRKQPITAVSEFPMIGARSIETKPFPAAPARKGLAWHRDSEVFEQLMDRSTSVSERPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKALKAAGAKALYLSGAFKEFGDDAAEAEKLIDGRLFMGMDVVDTLSSTLDILGVAK 638
               SCOP domains d1e1cb1 B:20-475 Methylmalonyl-CoA mutase beta subunit, domain 1                                                                                                                                                                                                                                                                                                                                                                                                        d1e1cb2 B:476-638 Methylmalonyl-CoA mutase beta subunit, C-terminal domain                                                                                          SCOP domains
               CATH domains -------------------------------------------1e1cB01 B:63-499  [code=3.20.20.240, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                1e1cB02 B:500-638  [code=3.40.50.280, no name defined]                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh...hhhhhhhhhhhhhh.........hhhhhhhhhh.............hhhhh............................eeee...hhhhhhhhhhhhhh....eeeee.........hhhhhh........eeeee...hhhhhhhhhhhhhhh...hhhhh......hhhhhhhhhh......hhhhhhhhhh........eeeehhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.eeeeeee..hhhhhhhhhhhhhhhhhhhhhhh..........eeeee........hhhhhhhhhhhhhhhhhhh...eee............hhhhhhhhhhhhhhhhhh.hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh......................................hhhhhhhhhhhhhh......eeee..hhhhhhhhhhhhhhhhhhh.....eee..hhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhh.eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------METMALONYL_COA_MUTASE     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1e1c B  20 TLSLAGDFPKATEEQWEREVEKVLNRGRPPEKQLTFAECLKRLTVHTVDGIDIVPMYRPKDAPKKLGYPGVAPFTRGTTVRNGDMDAWDVRALHEDPDEKFTRKAILEGLERGVTSLLLRVDPDAIAPEHLDEVLSDVLLEMTKVEVFSRYDQGAAAEALVSVYERSDKPAKDLALNLGLDPIGFAALQGTEPDLTVLGDWVRRLAKFSPDSRAVTIDANIYHNAGAGDVAELAWALATGAEYVRALVEQGFTATEAFDTINFRVTATHDQFLTIARLRALREAWARIGEVFGVDEDKRGARQNAITSWRELTREDPYVNILRGSIATFSASVGGAESITTLPFTQALGLPEDDFPLRIARNTGIVLAEEVNIGRVNDPAGGSYYVESLTRSLADAAWKEFQEVEKLGGMSKAVMTEHVTKVLDACNAERAKRLANRKQPITAVSEFPMIGARSIETKPFPAAPARKGLAWHRDSEVFEQLMDRSTSVSERPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKALKAAGAKALYLSGAFKEFGDDAAEAEKLIDGRLFMGMDVVDTLSSTLDILGVAK 638
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629         


Chain C from PDB  Type:PROTEIN  Length:727
 aligned with MUTB_PROFR | P11653 from UniProtKB/Swiss-Prot  Length:728

    Alignment length:727
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       
           MUTB_PROFR     2 STLPRFDSVDLGNAPVPADAARRFEELAAKAGTGEAWETAEQIPVGTLFNEDVYKDMDWLDTYAGIPPFVHGPYATMYAFRPWTIRQYAGFSTAKESNAFYRRNLAAGQKGLSVAFDLPTHRGYDSDNPRVAGDVGMAGVAIDSIYDMRELFAGIPLDQMSVSMTMNGAVLPILALYVVTAEEQGVKPEQLAGTIQNDILKEFMVRNTYIYPPQPSMRIISEIFAYTSANMPKWNSISISGYHMQEAGATADIEMAYTLADGVDYIRAGESVGLNVDQFAPRLSFFWGIGMNFFMEVAKLRAARMLWAKLVHQFGPKNPKSMSLRTHSQTSGWSLTAQDVYNNVVRTCIEAMAATQGHTQSLHTNSLDEAIALPTDFSARIARNTQLFLQQESGTTRVIDPWSGSAYVEELTWDLARKAWGHIQEVEKVGGMAKAIEKGIPKMRIEEAAARTQARIDSGRQPLIGVNKYRLEHEPPLDVLKVDNSTVLAEQKAKLVKLRAERDPEKVKAALDKITWAAGNPDDKDPDRNLLKLCIDAGRAMATVGEMSDALEKVFGRYTAQIRTISGVYSKEVKNTPEVEEARELVEEFEQAEGRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRASLDA 728
               SCOP domains d1e1cc1 C:2-560 Methylmalonyl-CoA mutase alpha subunit, domain 1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               d1e1cc2 C:561-728 Methylmalonyl-CoA mutase alpha subunit, C-terminal domain                                                                                              SCOP domains
               CATH domains ------------------------------------1e1cC01 C:38-559  [code=3.20.20.240, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ---1e1cC02 C:563-726  [code=3.40.50.280, no name defined]                                                                                                              -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.........hhhhhhhhhhhhhh...................hhhhhh..................hhhhh............hhhhhhhhhhhhhhh....eeee.hhhhhh.....hhhhhhhh........hhhhhhhhh........eeeee...hhhhhhhhhhhhhhhh..hhhhheeee...hhhhhhh......hhhhhhhhhhhhhhhhhhhh.....eeeehhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.eeeeeee..hhhhhhhhhhhhhhhhhhhhhh....hhhhhh..eeeee..........hhhhhhhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...........hhhhhh..hhhhhhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhh.....eeeeee..hhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------METMALONYL_COA_MUTASE     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------B12_BINDING  PDB: C:597-728 UniProt: 597-728                                                                                         PROSITE (1)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1e1c C   2 STLPRFDSVDLGNAPVPADAARRFEELAAKAGTGEAWETAEQIPVGTLFNEDVYKDMDWLDTYAGIPPFVHGPYATMYAFRPWTIRQYAGFSTAKESNAFYRRNLAAGQKGLSVAFDLPTHRGYDSDNPRVAGDVGMAGVAIDSIYDMRELFAGIPLDQMSVSMTMNGAVLPILALYVVTAEEQGVKPEQLAGTIQNDILKEFMVRNTYIYPPQPSMRIISEIFAYTSANMPKWNSISISGYAMQEAGATADIEMAYTLADGVDYIRAGESVGLNVDQFAPRLSFFWGIGMNFFMEVAKLRAARMLWAKLVHQFGPKNPKSMSLRTHSQTSGWSLTAQDVYNNVVRTCIEAMAATQGHTQSLHTNSLDEAIALPTDFSARIARNTQLFLQQESGTTRVIDPWSGSAYVEELTWDLARKAWGHIQEVEKVGGMAKAIEKGIPKMRIEEAAARTQARIDSGRQPLIGVNKYRLEHEPPLDVLKVDNSTVLAEQKAKLVKLRAERDPEKVKAALDKITWAAGNPDDKDPDRNLLKLCIDAGRAMATVGEMSDALEKVFGRYTAQIRTISGVYSKEVKNTPEVEEARELVEEFEQAEGRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRASLDA 728
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       


Chain D from PDB  Type:PROTEIN  Length:619
 aligned with MUTA_PROFR | P11652 from UniProtKB/Swiss-Prot  Length:638

    Alignment length:619
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629         
           MUTA_PROFR    20 TLSLAGDFPKATEEQWEREVEKVLNRGRPPEKQLTFAECLKRLTVHTVDGIDIVPMYRPKDAPKKLGYPGVAPFTRGTTVRNGDMDAWDVRALHEDPDEKFTRKAILEGLERGVTSLLLRVDPDAIAPEHLDEVLSDVLLEMTKVEVFSRYDQGAAAEALVSVYERSDKPAKDLALNLGLDPIAFAALQGTEPDLTVLGDWVRRLAKFSPDSRAVTIDANIYHNAGAGDVAELAWALATGAEYVRALVEQGFTATEAFDTINFRVTATHDQFLTIARLRALREAWARIGEVFGVDEDKRGARQNAITSWRDVTREDPYVNILRGSIATFSASVGGAESITTLPFTQALGLPEDDFPLRIARNTGIVLAEEVNIGRVNDPAGGSYYVESLTRSLADAAWKEFQEVEKLGGMSKAVMTEHVTKVLDACNAERAKRLANRKQPITAVSEFPMIGARSIETKPFPAAPARKGLAWHRDSEVFEQLMDRSTSVSERPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKALKAAGAKALYLSGAFKEFGDDAAEAEKLIDGRLFMGMDVVDTLSSTLDILGVAK 638
               SCOP domains d1e1cd1 D:20-475 Methylmalonyl-CoA mutase beta subunit, domain 1                                                                                                                                                                                                                                                                                                                                                                                                        d1e1cd2 D:476-638 Methylmalonyl-CoA mutase beta subunit, C-terminal domain                                                                                          SCOP domains
               CATH domains -------------------------------------------1e1cD01 D:63-499  [code=3.20.20.240, no name defined]                                                                                                                                                                                                                                                                                                                                                                                                1e1cD02 D:500-638  [code=3.40.50.280, no name defined]                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhh...hhhhhhhhhhhhhhh........hhhhhhhhh...............................................eeee...hhhhhhhhhhhhhhh...eeeee......hhhhhhhhh........eeeee...hhhhhhhhhhhhhhh...hhhhh......hhhhhhhhhh......hhhhhhhhh.........eeeehhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.eeeeeee..hhhhhhhhhhhhhhhhhhhhhhh..hhhhh...eeeee.........hhhhhhhhhhhhhhhhhhh..eee.............hhhhhhhhhhhhhhhhh.hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh......................................hhhhhhhhhhhhhh......eeee..hhhhhhhhhhhhhhhhhhh.....eee..hhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhh.eee....hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------METMALONYL_COA_MUTASE     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1e1c D  20 TLSLAGDFPKATEEQWEREVEKVLNRGRPPEKQLTFAECLKRLTVHTVDGIDIVPMYRPKDAPKKLGYPGVAPFTRGTTVRNGDMDAWDVRALHEDPDEKFTRKAILEGLERGVTSLLLRVDPDAIAPEHLDEVLSDVLLEMTKVEVFSRYDQGAAAEALVSVYERSDKPAKDLALNLGLDPIGFAALQGTEPDLTVLGDWVRRLAKFSPDSRAVTIDANIYHNAGAGDVAELAWALATGAEYVRALVEQGFTATEAFDTINFRVTATHDQFLTIARLRALREAWARIGEVFGVDEDKRGARQNAITSWRELTREDPYVNILRGSIATFSASVGGAESITTLPFTQALGLPEDDFPLRIARNTGIVLAEEVNIGRVNDPAGGSYYVESLTRSLADAAWKEFQEVEKLGGMSKAVMTEHVTKVLDACNAERAKRLANRKQPITAVSEFPMIGARSIETKPFPAAPARKGLAWHRDSEVFEQLMDRSTSVSERPKVFLACLGTRRDFGGREGFSSPVWHIAGIDTPQVEGGTTAEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKALKAAGAKALYLSGAFKEFGDDAAEAEKLIDGRLFMGMDVVDTLSSTLDILGVAK 638
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1E1C)

(-) Gene Ontology  (9, 17)

Asymmetric Unit(hide GO term definitions)
Chain A,C   (MUTB_PROFR | P11653)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0031419    cobalamin binding    Interacting selectively and non-covalently with cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom.
    GO:0016866    intramolecular transferase activity    Catalysis of the transfer of a functional group from one position to another within a single molecule.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004494    methylmalonyl-CoA mutase activity    Catalysis of the reaction: (R)-methylmalonyl-CoA = succinyl-CoA.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

Chain B,D   (MUTA_PROFR | P11652)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0031419    cobalamin binding    Interacting selectively and non-covalently with cobalamin (vitamin B12), a water-soluble vitamin characterized by possession of a corrin nucleus containing a cobalt atom.
    GO:0016866    intramolecular transferase activity    Catalysis of the transfer of a functional group from one position to another within a single molecule.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004494    methylmalonyl-CoA mutase activity    Catalysis of the reaction: (R)-methylmalonyl-CoA = succinyl-CoA.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0019652    lactate fermentation to propionate and acetate    The anaerobic enzymatic conversion of lactate to propionate, concomitant with the oxidation of lactate to acetate and CO2 and yielding energy in the form of adenosine triphosphate (ATP).
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MUTA_PROFR | P11652: 1req 2req 3req 4req 5req 6req 7req
        MUTB_PROFR | P11653: 1req 2req 3req 4req 5req 6req 7req

(-) Related Entries Specified in the PDB File

1req METHYLMALONYL-COA MUTASE
2req METHYLMALONYL-COA MUTASE, NON-PRODUCTIVE COA COMPLEX, IN OPEN CONFORMATION REPRESENTING SUBSTRATE-FREE STATE
3req METHYLMALONYL-COA MUTASE, SUBSTRATE-FREE STATE (POOR QUALITY STRUCTURE)
4req METHYLMALONYL-COA MUTASE SUBSTRATE COMPLEX
5req METHYLMALONYL-COA MUTASE, Y89F MUTANT, SUBSTRATE COMPLEX
6req METHYLMALONYL-COA MUTASE, 3-CARBOXYPROPYL-COA INHIBITOR COMPLEX
7req METHYLMALONYL-COA MUTASE, 2-CARBOXYPROPYL-COA INHIBITOR COMPLEX