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1E1C
Biol. Unit 2
Info
Asym.Unit (461 KB)
Biol.Unit 1 (230 KB)
Biol.Unit 2 (230 KB)
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(1)
Title
:
METHYLMALONYL-COA MUTASE H244A MUTANT
Authors
:
P. R. Evans, N. H. Thoma
Date
:
30 Apr 00 (Deposition) - 07 May 00 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.62
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Isomerase, Mutase, Intramolecular Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. H. Thoma, P. R. Evans, P. F. Leadlay
Protection Of Radical Intermediates At The Active Site Of Adenosylcobalamin-Dependent Methylmalonyl-Coa Mutase
Biochemistry V. 39 9213 2000
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: COBALAMIN (B12a)
1b: COBALAMIN (B12b)
2a: DESULFO-COENZYME A (DCAa)
2b: DESULFO-COENZYME A (DCAb)
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No.
Name
Count
Type
Full Name
1
B12
1
Ligand/Ion
COBALAMIN
2
DCA
1
Ligand/Ion
DESULFO-COENZYME A
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Sites
(2, 2)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
TYR C:89 , PHE C:117 , LEU C:119 , HIS C:122 , ALA C:139 , VAL C:206 , ARG C:207 , GLU C:247 , GLY C:333 , TRP C:334 , GLU C:370 , ALA C:371 , ALA C:373 , LEU C:374 , LEU C:602 , GLY C:609 , HIS C:610 , ASP C:611 , ARG C:612 , GLY C:613 , TYR C:621 , SER C:655 , LEU C:657 , GLY C:659 , GLY C:685 , GLY C:686 , VAL C:687 , TYR C:705 , THR C:706 , THR C:709 , HOH C:2109 , HOH C:2127 , HOH C:2162 , HOH C:2249 , HOH C:2458 , HOH C:2472 , HOH C:2473 , HOH C:2475 , HOH C:2476 , HOH C:2477
BINDING SITE FOR RESIDUE B12 C 800
2
AC4
SOFTWARE
TYR C:75 , THR C:77 , MET C:78 , PHE C:81 , ARG C:82 , THR C:85 , ARG C:87 , TYR C:89 , SER C:114 , SER C:164 , THR C:166 , THR C:195 , ASN C:236 , ARG C:283 , SER C:285 , ARG C:326 , THR C:327 , HIS C:328 , GLN C:361 , SER C:362 , HOH C:2068 , HOH C:2075 , HOH C:2076 , HOH C:2108 , HOH C:2221 , HOH C:2222 , HOH C:2479 , HOH C:2480 , HOH C:2482 , HOH C:2484 , HOH C:2485 , HOH C:2486 , HOH C:2487 , HOH C:2488 , HOH C:2489 , HOH C:2490 , ARG D:45
BINDING SITE FOR RESIDUE DCA C 801
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: METMALONYL_COA_MUTASE (C:381-406)
2: B12_BINDING (C:597-728)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
METMALONYL_COA_MUTASE
PS00544
Methylmalonyl-CoA mutase signature.
MUTA_PROFR
377-402
1
-
D:377-402
MUTB_PROFR
381-406
1
-
C:381-406
2
B12_BINDING
PS51332
B12-binding domain profile.
MUTB_PROFR
597-728
1
-
C:597-728
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1e1ca2 (A:561-728)
1b: SCOP_d1e1cc2 (C:561-728)
2a: SCOP_d1e1cb2 (B:476-638)
2b: SCOP_d1e1cd2 (D:476-638)
3a: SCOP_d1e1ca1 (A:2-560)
3b: SCOP_d1e1cc1 (C:2-560)
4a: SCOP_d1e1cb1 (B:20-475)
4b: SCOP_d1e1cd1 (D:20-475)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Cobalamin (vitamin B12)-binding domain
(29)
Family
:
Cobalamin (vitamin B12)-binding domain
(29)
Protein domain
:
Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
(8)
Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
(8)
1a
d1e1ca2
A:561-728
1b
d1e1cc2
C:561-728
Protein domain
:
Methylmalonyl-CoA mutase beta subunit, C-terminal domain
(8)
Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
(8)
2a
d1e1cb2
B:476-638
2b
d1e1cd2
D:476-638
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Cobalamin (vitamin B12)-dependent enzymes
(30)
Family
:
Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain
(16)
Protein domain
:
Methylmalonyl-CoA mutase alpha subunit, domain 1
(8)
Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
(8)
3a
d1e1ca1
A:2-560
3b
d1e1cc1
C:2-560
Protein domain
:
Methylmalonyl-CoA mutase beta subunit, domain 1
(8)
Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
(8)
4a
d1e1cb1
B:20-475
4b
d1e1cd1
D:20-475
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1e1cB02 (B:500-638)
1b: CATH_1e1cD02 (D:500-638)
1c: CATH_1e1cA02 (A:563-726)
1d: CATH_1e1cC02 (C:563-726)
2a: CATH_1e1cB01 (B:63-499)
2b: CATH_1e1cD01 (D:63-499)
2c: CATH_1e1cA01 (A:38-559)
2d: CATH_1e1cC01 (C:38-559)
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Organisms
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.280, no name defined]
(23)
Shermanii (Propionibacterium freudenreichii subsp)
(1)
1a
1e1cB02
B:500-638
1b
1e1cD02
D:500-638
1c
1e1cA02
A:563-726
1d
1e1cC02
C:563-726
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
[code=3.20.20.240, no name defined]
(12)
Shermanii (Propionibacterium freudenreichii subsp)
(1)
2a
1e1cB01
B:63-499
2b
1e1cD01
D:63-499
2c
1e1cA01
A:38-559
2d
1e1cC01
C:38-559
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Pfam Domains
(0, 0)
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Chain C
Chain D
Asymmetric Unit 1
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Asym.Unit (461 KB)
Header - Asym.Unit
Biol.Unit 1 (230 KB)
Header - Biol.Unit 1
Biol.Unit 2 (230 KB)
Header - Biol.Unit 2
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