1DZK - JenaLib

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Title :   PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH PYRAZINE (2-ISOBUTYL-3-METOXYPYRAZINE)

Authors :   F. Vincent, S. Spinelli, C. Cambillau, M. Tegoni

Date :   01 Mar 00 (Deposition) - 06 Dec 00 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.48

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Lipocalin, Transport, Olfaction, Sensory Transduction (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Vincent, S. Spinelli, R. Ramoni, S. Grolli, P. Pelosi, C. Cambillau M. Tegoni
Complexes Of Porcine Odorant Binding Protein With Odorant Molecules Belonging To Different Chemical Classes
J. Mol. Biol. V. 300 127 2000
PubMed-ID: 10864504 | Reference-DOI: 10.1006/JMBI.2000.3820

Molecule 1 - ODORANT-BINDING PROTEIN
	Chains	:	A, B
	Organ	:	NOSE
	Organism Common	:	PIG
	Organism Scientific	:	SUS SCROFA
	Organism Taxid	:	9823
	Synonym	:	PIG OBP
	Tissue	:	OLFACTORY EPITHELIUM

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	PRZ	2	Ligand/Ion	2-ISOBUTYL-3-METHOXYPYRAZINE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	PRZ	1	Ligand/Ion	2-ISOBUTYL-3-METHOXYPYRAZINE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	PRZ	1	Ligand/Ion	2-ISOBUTYL-3-METHOXYPYRAZINE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:35 , MET A:114	BINDING SITE FOR RESIDUE PRZ A 700
2	AC2	SOFTWARE	ASN B:102 , MET B:114	BINDING SITE FOR RESIDUE PRZ B 700

Asymmetric Unit

No.	Residues
1	A:63	-	A:155
2	B:63	-	B:155

(no "Cis Peptide Bond" information available for 1DZK)

(no "SAP(SNP)/Variant" information available for 1DZK)

(no "PROSITE Motif" information available for 1DZK)

(no "Exon" information available for 1DZK)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:148
 aligned with OBP_PIG | P81245 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:148
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149        
              OBP_PIG    10 FELSGKWITSYIGSSDLEKIGENAPFQVFMRSIEFDDKESKVYLNFFSKENGICEEFSLIGTKQEGNTYDVNYAGNNKFVVSYASETALIISNINVDEEGDKTIMTGLLGKGTDIEDQDLEKFKEVTRENGIPEENIVNIIERDDCPA 157
               SCOP domains d1dzka_ A: Odorant-binding protein                                                                                                                   SCOP domains
               CATH domains 1dzkA00 A:10-157  [code=2.40.128.20, no name defined]                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeee.hhhhh........eeeeeeee....eeeeeeeeee..eeeeeeeeeeee...eeeee...eeeeeeeee...eeeeeeeee.....eeeeeeeee.....hhhhhhhhhhhhhhh..hhh.....hhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dzk A  10 FELSGKWITSYIGSSDLEKIGENAPFQVFMRSIEFDDKESKVYLNFFSKENGICEEFSLIGTKQEGNTYDVNYAGNNKFVVSYASETALIISNINVDEEGDKTIMTGLLGKGTDIEDQDLEKFKEVTRENGIPEENIVNIIERDDCPA 157
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149

Chain B from PDB  Type:PROTEIN  Length:148
 aligned with OBP_PIG | P81245 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:148
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149        
              OBP_PIG    10 FELSGKWITSYIGSSDLEKIGENAPFQVFMRSIEFDDKESKVYLNFFSKENGICEEFSLIGTKQEGNTYDVNYAGNNKFVVSYASETALIISNINVDEEGDKTIMTGLLGKGTDIEDQDLEKFKEVTRENGIPEENIVNIIERDDCPA 157
               SCOP domains d1dzkb_ B: Odorant-binding protein                                                                                                                   SCOP domains
               CATH domains 1dzkB00 B:10-157  [code=2.40.128.20, no name defined]                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeee.hhhhhh.......eeeeeeee....eeeeeeeeee..eeeeeeeeeeee...eeeee...eeeeeeeee....eeeeeeee.....eeeeeeeee.....hhhhhhhhhhhhhhh..hhh.....hhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1dzk B  10 FELSGKWITSYIGSSDLEKIGENAPFQVFMRSIEFDDKESKVYLNFFSKENGICEEFSLIGTKQEGNTYDVNYAGNNKFVVSYASETALIISNINVDEEGDKTIMTGLLGKGTDIEDQDLEKFKEVTRENGIPEENIVNIIERDDCPA 157
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Lipocalins (514)

Superfamily: Lipocalins (514)

Family: Retinol binding protein-like (261)

Protein domain: Odorant-binding protein (17)

Pig (Sus scrofa) [TaxId: 9823] (9)

1a	d1dzka_	A:
1b	d1dzkb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: Lipocalin (526)

Homologous Superfamily: [code=2.40.128.20, no name defined] (352)

Pig (Sus scrofa) (13)

1a	1dzkA00	A:10-157
1b	1dzkB00	B:10-157

(no "Pfam Domain" information available for 1DZK)

Asymmetric Unit(hide GO term definitions)

Chain A,B (OBP_PIG | P81245)

molecular function
	GO:0005549	odorant binding	Interacting selectively and non-covalently with an odorant, any substance capable of stimulating the sense of smell.
	GO:0005215	transporter activity	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
	GO:0050896	response to stimulus	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
	GO:0007608	sensory perception of smell	The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. This is a neurological process.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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		Biological Unit 2	[ Jena3D ]

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	1dzk
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	OBP_PIG \| P81245
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UniProtKB/Swiss-Prot
	OBP_PIG \| P81245	:	1a3y 1dzj 1dzm 1dzp 1e00 1e02 1e06 1hqp

1a3y	ODORANT BINDING PROTEIN FROM NASAL MUCOSA OF PIG
1dzj	PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH 2-AMINO-4-BUTYL-5-PROPYLSELENAZOLE
1dzm	PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH BENZOIC ACID PHENYLMETHYLESTER
1dzp	PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH DIPHENYLMETHANONE
1e00	PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH 2,6-DIMETHYL-7-OCTEN-2-OL
1e02	PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH UNDECANAL
1e06	PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH 5-METHYL-2-(1-METHYLETHYL)PHENOL

Description

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Chains, Units

Ligands, Modified Residues, Ions (1, 2)

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SS Bonds (2, 2)

Cis Peptide Bonds (0, 0)

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SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

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