1E00 - JenaLib

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Title :   PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH 2,6-DIMETHYL-7-OCTEN-2-OL

Authors :   F. Vincent, S. Spinelli, C. Cambillau, M. Tegoni

Date :   07 Mar 00 (Deposition) - 06 Dec 00 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.83

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Odorant Binding Protein, Lipocalins (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Vincent, S. Spinelli, R. Ramoni, S. Grolli, P. Pelosi, C. Cambillau, M. Tegoni
Complexes Of Porcine Odorant Binding Protein With Odorant Molecules Belonging To Different Chemical Classes
J. Mol. Biol. V. 300 127 2000
PubMed-ID: 10864504 | Reference-DOI: 10.1006/JMBI.2000.3820

Molecule 1 - ODORANT-BINDING PROTEIN
	Chains	:	A, B
	Organ	:	NOSE
	Organism Common	:	PIG
	Organism Scientific	:	SUS SCROFA
	Organism Taxid	:	9823
	Synonym	:	PIG OBP
	Tissue	:	OLFACTORY EPITHELIUM

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	DHM	2	Ligand/Ion	2,6-DIMETHYL-7-OCTEN-2-OL

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	DHM	1	Ligand/Ion	2,6-DIMETHYL-7-OCTEN-2-OL

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	DHM	1	Ligand/Ion	2,6-DIMETHYL-7-OCTEN-2-OL

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	VAL A:80 , PHE A:88 , ASN A:102 , MET A:114 , THR A:115	BINDING SITE FOR RESIDUE DHM A 600
2	AC2	SOFTWARE	ILE B:21 , PHE B:35 , LEU B:68 , ASN B:86 , ILE B:100 , THR B:115	BINDING SITE FOR RESIDUE DHM B 600

Asymmetric Unit

No.	Residues
1	A:63	-	A:155
2	B:63	-	B:155

(no "Cis Peptide Bond" information available for 1E00)

(no "SAP(SNP)/Variant" information available for 1E00)

(no "PROSITE Motif" information available for 1E00)

(no "Exon" information available for 1E00)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:149
 aligned with OBP_PIG | P81245 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:149
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148         
              OBP_PIG     9 PFELSGKWITSYIGSSDLEKIGENAPFQVFMRSIEFDDKESKVYLNFFSKENGICEEFSLIGTKQEGNTYDVNYAGNNKFVVSYASETALIISNINVDEEGDKTIMTGLLGKGTDIEDQDLEKFKEVTRENGIPEENIVNIIERDDCPA 157
               SCOP domains d1e00a_ A: Odorant-binding protein                                                                                                                    SCOP domains
               CATH domains 1e00A00 A:9-157  [code=2.40.128.20, no name defined]                                                                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeee.hhhhh.......eeeeeeeee....eeeeeeeeee..eeeeeeeeeeee...eeeee...eeeeeeeee...eeeeeeeee.....eeeeeeeee.....hhhhhhhhhhhhhhh..hhh.....hhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1e00 A   9 PFELSGKWITSYIGSSDLEKIGENAPFQVFMRSIEFDDKESKVYLNFFSKENGICEEFSLIGTKQEGNTYDVNYAGNNKFVVSYASETALIISNINVDEEGDKTIMTGLLGKGTDIEDQDLEKFKEVTRENGIPEENIVNIIERDDCPA 157
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148

Chain B from PDB  Type:PROTEIN  Length:148
 aligned with OBP_PIG | P81245 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:148
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149        
              OBP_PIG    10 FELSGKWITSYIGSSDLEKIGENAPFQVFMRSIEFDDKESKVYLNFFSKENGICEEFSLIGTKQEGNTYDVNYAGNNKFVVSYASETALIISNINVDEEGDKTIMTGLLGKGTDIEDQDLEKFKEVTRENGIPEENIVNIIERDDCPA 157
               SCOP domains d1e00b_ B: Odorant-binding protein                                                                                                                   SCOP domains
               CATH domains 1e00B00 B:10-157  [code=2.40.128.20, no name defined]                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeee.hhhhhh.......eeeeeeee....eeeeeeeeee..eeeeeeeeeeee...eeeee...eeeeeeeee....eeeeeeee.....eeeeeeeee.....hhhhhhhhhhhhhhh..hhh.....hhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1e00 B  10 FELSGKWITSYIGSSDLEKIGENAPFQVFMRSIEFDDKESKVYLNFFSKENGICEEFSLIGTKQEGNTYDVNYAGNNKFVVSYASETALIISNINVDEEGDKTIMTGLLGKGTDIEDQDLEKFKEVTRENGIPEENIVNIIERDDCPA 157
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Lipocalins (514)

Superfamily: Lipocalins (514)

Family: Retinol binding protein-like (261)

Protein domain: Odorant-binding protein (17)

Pig (Sus scrofa) [TaxId: 9823] (9)

1a	d1e00a_	A:
1b	d1e00b_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: Lipocalin (526)

Homologous Superfamily: [code=2.40.128.20, no name defined] (352)

Pig (Sus scrofa) (13)

1a	1e00A00	A:9-157
1b	1e00B00	B:10-157

(no "Pfam Domain" information available for 1E00)

Asymmetric Unit(hide GO term definitions)

Chain A,B (OBP_PIG | P81245)

molecular function
	GO:0005549	odorant binding	Interacting selectively and non-covalently with an odorant, any substance capable of stimulating the sense of smell.
	GO:0005215	transporter activity	Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
	GO:0050896	response to stimulus	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
	GO:0007608	sensory perception of smell	The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. This is a neurological process.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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UniProtKB/Swiss-Prot
	OBP_PIG \| P81245	:	1a3y 1dzj 1dzk 1dzm 1dzp 1e02 1e06 1hqp

1a3y	ODORANT BINDING PROTEIN FROM NASAL MUCOSA OF PIG
1dzj	PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH 2-AMINO-4-BUTYL-5-PROPYLSELENAZOLE
1dzk	PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH (2-ISOBUTYL-3-METOXYPYRAZINE)
1dzm	PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH BENZOIC ACID PHENYLMETHYLESTER
1dzp	PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH DIPHENYLMETHANONE
1e02	PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH UNDECANAL
1e06	PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH 5-METHYL-2-(1-METHYLETHYL)PHENOL

Description

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Ligands, Modified Residues, Ions (1, 2)

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Gene Ontology (6, 6)

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