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(-) Description

Title :  CRYSTAL STRUCTURE OF CYSTALYSIN FROM TREPONEMA DENTICOLA CONTAINS A PYRIDOXAL 5'-PHOSPHATE-L-AMINOETHOXYVINYLGLYCINE COMPLEX
 
Authors :  H. I. Krupka, R. Huber, S. C. Holt, T. Clausen
Date :  16 Mar 00  (Deposition) - 26 Jul 00  (Release) - 28 Dec 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Transferase, Aminotransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. I. Krupka, R. Huber, S. C. Holt, T. Clausen
Crystal Structure Of Cystalysin From Treponema Denticola: A Pyridoxal 5'-Phosphate-Dependent Protein Acting As A Haemolytic Enzyme.
Embo J. V. 19 3168 2000
PubMed-ID: 10880431  |  Reference-DOI: 10.1093/EMBOJ/19.13.3168

(-) Compounds

Molecule 1 - CYSTALYSIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PLC67
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: TREPONEMA DENTICOLA
    Organism Taxid: 158

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1PPG8Ligand/Ion(2E,3E)-4-(2-AMINOETHOXY)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)IMINO]BUT-3-ENOIC ACID
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1PPG2Ligand/Ion(2E,3E)-4-(2-AMINOETHOXY)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)IMINO]BUT-3-ENOIC ACID
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1PPG2Ligand/Ion(2E,3E)-4-(2-AMINOETHOXY)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)IMINO]BUT-3-ENOIC ACID
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1PPG2Ligand/Ion(2E,3E)-4-(2-AMINOETHOXY)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)IMINO]BUT-3-ENOIC ACID
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1PPG2Ligand/Ion(2E,3E)-4-(2-AMINOETHOXY)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)IMINO]BUT-3-ENOIC ACID

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:17 , VAL A:38 , ALA A:39 , GLY A:97 , VAL A:98 , VAL A:99 , TYR A:123 , CYS A:171 , ASN A:175 , ASP A:203 , ILE A:205 , HIS A:206 , LYS A:238 , ARG A:369 , HOH A:1551 , TYR B:64BINDING SITE FOR RESIDUE PPG A 1500
2AC2SOFTWARETYR A:64 , PHE A:273 , LEU B:17 , ALA B:39 , GLY B:97 , VAL B:98 , VAL B:99 , TYR B:123 , CYS B:171 , ASN B:175 , ASP B:203 , ILE B:205 , HIS B:206 , LYS B:238 , ARG B:369 , HOH B:2544BINDING SITE FOR RESIDUE PPG B 2500
3AC3SOFTWARELEU C:17 , VAL C:38 , ALA C:39 , GLY C:97 , VAL C:98 , VAL C:99 , TYR C:123 , CYS C:171 , ASN C:175 , ASP C:203 , ILE C:205 , HIS C:206 , LYS C:238 , ASP C:355 , ARG C:369 , HOH C:3548 , HOH C:3633 , TYR D:64 , PHE D:273BINDING SITE FOR RESIDUE PPG C 3500
4AC4SOFTWARETYR C:64 , PHE C:273 , LEU D:17 , VAL D:38 , ALA D:39 , GLY D:97 , VAL D:98 , VAL D:99 , PRO D:100 , TYR D:123 , CYS D:171 , ASN D:175 , ASP D:203 , ILE D:205 , HIS D:206 , LYS D:238 , ASP D:355 , ARG D:369 , HOH D:4572BINDING SITE FOR RESIDUE PPG D 4500
5AC5SOFTWAREALA E:39 , GLY E:97 , VAL E:98 , VAL E:99 , TYR E:123 , CYS E:171 , ASN E:175 , ASP E:203 , ILE E:205 , HIS E:206 , LYS E:238 , ARG E:369 , TYR F:64BINDING SITE FOR RESIDUE PPG E 5500
6AC6SOFTWARETYR E:64 , LEU F:17 , VAL F:38 , ALA F:39 , GLY F:97 , VAL F:98 , VAL F:99 , TYR F:123 , CYS F:171 , ASN F:175 , ASP F:203 , ILE F:205 , HIS F:206 , LYS F:238 , ARG F:369 , HOH F:6545 , HOH F:6550 , HOH F:6662BINDING SITE FOR RESIDUE PPG F 6500
7AC7SOFTWARELEU G:17 , VAL G:38 , ALA G:39 , GLY G:97 , VAL G:98 , VAL G:99 , TYR G:123 , TYR G:124 , CYS G:171 , ASN G:175 , ASP G:203 , ILE G:205 , HIS G:206 , SER G:237 , LYS G:238 , ARG G:369 , TYR H:64BINDING SITE FOR RESIDUE PPG G 7500
8AC8SOFTWARETYR G:64 , LEU H:17 , VAL H:38 , ALA H:39 , GLY H:97 , VAL H:98 , VAL H:99 , TYR H:123 , CYS H:171 , ASN H:175 , ASP H:203 , ILE H:205 , HIS H:206 , LYS H:238 , ARG H:369 , HOH H:8514 , HOH H:8522 , HOH H:8556BINDING SITE FOR RESIDUE PPG H 8500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1C7O)

(-) Cis Peptide Bonds  (24, 24)

Asymmetric Unit
No.Residues
1Thr A:120 -Pro A:121
2Ser A:172 -Pro A:173
3Asn A:175 -Pro A:176
4Thr B:120 -Pro B:121
5Ser B:172 -Pro B:173
6Asn B:175 -Pro B:176
7Thr C:120 -Pro C:121
8Ser C:172 -Pro C:173
9Asn C:175 -Pro C:176
10Thr D:120 -Pro D:121
11Ser D:172 -Pro D:173
12Asn D:175 -Pro D:176
13Thr E:120 -Pro E:121
14Ser E:172 -Pro E:173
15Asn E:175 -Pro E:176
16Thr F:120 -Pro F:121
17Ser F:172 -Pro F:173
18Asn F:175 -Pro F:176
19Thr G:120 -Pro G:121
20Ser G:172 -Pro G:173
21Asn G:175 -Pro G:176
22Thr H:120 -Pro H:121
23Ser H:172 -Pro H:173
24Asn H:175 -Pro H:176

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1C7O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1C7O)

(-) Exons   (0, 0)

(no "Exon" information available for 1C7O)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:394
 aligned with Q56257_TREDN | Q56257 from UniProtKB/TrEMBL  Length:399

    Alignment length:394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    
         Q56257_TREDN     1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIETDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFEKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDITSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
               SCOP domains d1c7oa_ A: Cystalysin                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---1c7oA01 A:4-62,A:288-389                                   1c7oA02 A:63-287 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                             1c7oA01 A:4-62,A:288-389 Aspartate Aminotransferase, domain 1                                         ----- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhh...................hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh...hhh.eeee.hhhhhhhhhhhhhh....eeee.....hhhhhhhhh...eeee...eee..eee.hhhhhhhhh....eeeeeee..........hhhhhhhhhhhhhh...eeeee..............hhhhhhhhhhh.eeeee.hhhhhh......eeeee.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee.hhhh.hhhhhhhhhhhh.....ee.hhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1c7o A   1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    


Chain B from PDB  Type:PROTEIN  Length:394
 aligned with Q56257_TREDN | Q56257 from UniProtKB/TrEMBL  Length:399

    Alignment length:394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    
         Q56257_TREDN     1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIETDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFEKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDITSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
               SCOP domains d1c7ob_ B: Cystalysin                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1c7oB01 B:1-62,B:288-389 Aspartate Aminotransferase, domain 1 1c7oB02 B:63-287 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                             1c7oB01 B:1-62,B:288-389 Aspartate Aminotransferase, domain 1                                         ----- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhh...................hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh...hhh.eeee.hhhhhhhhhhhhhh....eeee.....hhhhhhhhh...eeee...eee..eee.hhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhhh..eeeee..............hhhhhhhhhhh.eeeee.hhhhhh......eeeee.hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee.hhhh.hhhhhhhhhhhh.....ee.hhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1c7o B   1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    


Chain C from PDB  Type:PROTEIN  Length:394
 aligned with Q56257_TREDN | Q56257 from UniProtKB/TrEMBL  Length:399

    Alignment length:394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    
         Q56257_TREDN     1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIETDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFEKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDITSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
               SCOP domains d1c7oc_ C: Cystalysin                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1c7oC01 C:1-62,C:288-389 Aspartate Aminotransferase, domain 1 1c7oC02 C:63-287 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                             1c7oC01 C:1-62,C:288-389 Aspartate Aminotransferase, domain 1                                         ----- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhh...................hhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh...hhh.eeee.hhhhhhhhhhhhhh....eeee.....hhhhhhhhh...eeee...eee..eee.hhhhhhhhhhh..eeeeeee..........hhhhhhhhhhhhhhh..eeeee..............hhhhhhhhhhh.eeeee.............eeeee.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee.hhhh.hhhhhhhhhhhh.....ee.hhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1c7o C   1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    


Chain D from PDB  Type:PROTEIN  Length:394
 aligned with Q56257_TREDN | Q56257 from UniProtKB/TrEMBL  Length:399

    Alignment length:394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    
         Q56257_TREDN     1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIETDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFEKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDITSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
               SCOP domains d1c7od_ D: Cystalysin                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1c7oD01 D:1-62,D:288-389 Aspartate Aminotransferase, domain 1 1c7oD02 D:63-287 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                             1c7oD01 D:1-62,D:288-389 Aspartate Aminotransferase, domain 1                                         ----- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhh...................hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh...hhh.eeee.hhhhhhhhhhhhhh....eeee.....hhhhhhhhh...eeee...eee..eee.hhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhhh..eeeee..............hhhhhhhhhhhheeeee.......hhhhh.eeeee.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee.hhhh.hhhhhhhhhhhh.....ee.hhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1c7o D   1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    


Chain E from PDB  Type:PROTEIN  Length:394
 aligned with Q56257_TREDN | Q56257 from UniProtKB/TrEMBL  Length:399

    Alignment length:394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    
         Q56257_TREDN     1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIETDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFEKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDITSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
               SCOP domains d1c7oe_ E: Cystalysin                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1c7oE01 E:1-62,E:288-389 Aspartate Aminotransferase, domain 1 1c7oE02 E:63-287 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                             1c7oE01 E:1-62,E:288-389 Aspartate Aminotransferase, domain 1                                         ----- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhh...................hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh...hhh.eeee.hhhhhhhhhhhhhh....eeee.....hhhhhhhhh...eeee...eee..eee.hhhhhhhhhhh..eeeeeee..........hhhhhhhhhhhhhhh..eeeee..............hhhhhhhhhhhheeeee.hhhhhh......eeee..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee.hhhh.hhhhhhhhhhhh.....ee.hhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1c7o E   1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    


Chain F from PDB  Type:PROTEIN  Length:394
 aligned with Q56257_TREDN | Q56257 from UniProtKB/TrEMBL  Length:399

    Alignment length:394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    
         Q56257_TREDN     1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIETDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFEKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDITSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
               SCOP domains d1c7of_ F: Cystalysin                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1c7oF01 F:1-62,F:288-389 Aspartate Aminotransferase, domain 1 1c7oF02 F:63-287 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                             1c7oF01 F:1-62,F:288-389 Aspartate Aminotransferase, domain 1                                         ----- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhh...................hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh...hhh.eeee.hhhhhhhhhhhhhh....eeee.....hhhhhhhhh...eeee...eee..eee.hhhhhhhhhhh..eeeeeee..........hhhhhhhhhhhhhh...eeeee..............hhhhhhhhhhhheeeee.hhhhhhhhhhh.eeeee.hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee.hhhh.hhhhhhhhhhhh.....ee.hhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1c7o F   1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    


Chain G from PDB  Type:PROTEIN  Length:394
 aligned with Q56257_TREDN | Q56257 from UniProtKB/TrEMBL  Length:399

    Alignment length:394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    
         Q56257_TREDN     1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIETDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFEKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDITSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
               SCOP domains d1c7og_ G: Cystalysin                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1c7oG01 G:1-62,G:288-389 Aspartate Aminotransferase, domain 1 1c7oG02 G:63-287 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                             1c7oG01 G:1-62,G:288-389 Aspartate Aminotransferase, domain 1                                         ----- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhh...................hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh...hhh.ee...hhhhhhhhhhhhhh....eeee.....hhhhhhhhh...eeee...eee..eee.hhhhhhhhhhh..eeeeeee..........hhhhhhhhhhhhhhh..eeeee..............hhhhhhhhhhh.eeeee..............eeee.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee.hhhh.hhhhhhhhhhhh.....ee.hhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1c7o G   1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    


Chain H from PDB  Type:PROTEIN  Length:394
 aligned with Q56257_TREDN | Q56257 from UniProtKB/TrEMBL  Length:399

    Alignment length:394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    
         Q56257_TREDN     1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIETDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFEKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDITSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
               SCOP domains d1c7oh_ H: Cystalysin                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1c7oH01 H:1-62,H:288-389 Aspartate Aminotransferase, domain 1 1c7oH02 H:63-287 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                             1c7oH01 H:1-62,H:288-389 Aspartate Aminotransferase, domain 1                                         ----- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhh...................hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh...hhh.eeee.hhhhhhhhhhhhhh....eeee.....hhhhhhhhh...eeee...eee..eee.hhhhhhhhhhh..eeeeeee..........hhhhhhhhhhhhhh...eeeee..............hhhhhhhhhhh.eeeee.hhhhhh......eeeee.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee.hhhh.hhhhhhhhhhhh.....ee.hhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1c7o H   1 MIYDFTTKISRKNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLK 394
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 16)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1C7O)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q56257_TREDN | Q56257)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0030170    pyridoxal phosphate binding    Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
biological process
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

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  1c7o
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q56257_TREDN | Q56257: 1c7n

(-) Related Entries Specified in the PDB File

1c7n