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1C7O
Biol. Unit 1
Info
Asym.Unit (548 KB)
Biol.Unit 1 (141 KB)
Biol.Unit 2 (141 KB)
Biol.Unit 3 (141 KB)
Biol.Unit 4 (141 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CYSTALYSIN FROM TREPONEMA DENTICOLA CONTAINS A PYRIDOXAL 5'-PHOSPHATE-L-AMINOETHOXYVINYLGLYCINE COMPLEX
Authors
:
H. I. Krupka, R. Huber, S. C. Holt, T. Clausen
Date
:
16 Mar 00 (Deposition) - 26 Jul 00 (Release) - 28 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Transferase, Aminotransferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. I. Krupka, R. Huber, S. C. Holt, T. Clausen
Crystal Structure Of Cystalysin From Treponema Denticola: A Pyridoxal 5'-Phosphate-Dependent Protein Acting As A Haemolytic Enzyme.
Embo J. V. 19 3168 2000
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: (2E,3E)-4-(2-AMINOETHOXY)-2-[({3-H... (PPGa)
1b: (2E,3E)-4-(2-AMINOETHOXY)-2-[({3-H... (PPGb)
1c: (2E,3E)-4-(2-AMINOETHOXY)-2-[({3-H... (PPGc)
1d: (2E,3E)-4-(2-AMINOETHOXY)-2-[({3-H... (PPGd)
1e: (2E,3E)-4-(2-AMINOETHOXY)-2-[({3-H... (PPGe)
1f: (2E,3E)-4-(2-AMINOETHOXY)-2-[({3-H... (PPGf)
1g: (2E,3E)-4-(2-AMINOETHOXY)-2-[({3-H... (PPGg)
1h: (2E,3E)-4-(2-AMINOETHOXY)-2-[({3-H... (PPGh)
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No.
Name
Count
Type
Full Name
1
PPG
2
Ligand/Ion
(2E,3E)-4-(2-AMINOETHOXY)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)IMINO]BUT-3-ENOIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:17 , VAL A:38 , ALA A:39 , GLY A:97 , VAL A:98 , VAL A:99 , TYR A:123 , CYS A:171 , ASN A:175 , ASP A:203 , ILE A:205 , HIS A:206 , LYS A:238 , ARG A:369 , HOH A:1551 , TYR B:64
BINDING SITE FOR RESIDUE PPG A 1500
2
AC2
SOFTWARE
TYR A:64 , PHE A:273 , LEU B:17 , ALA B:39 , GLY B:97 , VAL B:98 , VAL B:99 , TYR B:123 , CYS B:171 , ASN B:175 , ASP B:203 , ILE B:205 , HIS B:206 , LYS B:238 , ARG B:369 , HOH B:2544
BINDING SITE FOR RESIDUE PPG B 2500
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1c7oa_ (A:)
1b: SCOP_d1c7oc_ (C:)
1c: SCOP_d1c7od_ (D:)
1d: SCOP_d1c7oe_ (E:)
1e: SCOP_d1c7of_ (F:)
1f: SCOP_d1c7og_ (G:)
1g: SCOP_d1c7oh_ (H:)
1h: SCOP_d1c7ob_ (B:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
Cystathionine synthase-like
(64)
Protein domain
:
Cystalysin
(2)
Treponema denticola [TaxId: 158]
(2)
1a
d1c7oa_
A:
1b
d1c7oc_
C:
1c
d1c7od_
D:
1d
d1c7oe_
E:
1e
d1c7of_
F:
1f
d1c7og_
G:
1g
d1c7oh_
H:
1h
d1c7ob_
B:
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1c7oA02 (A:63-287)
1b: CATH_1c7oC02 (C:63-287)
1c: CATH_1c7oD02 (D:63-287)
1d: CATH_1c7oE02 (E:63-287)
1e: CATH_1c7oF02 (F:63-287)
1f: CATH_1c7oG02 (G:63-287)
1g: CATH_1c7oH02 (H:63-287)
1h: CATH_1c7oB02 (B:63-287)
2a: CATH_1c7oA01 (A:4-62,A:288-389)
2b: CATH_1c7oC01 (C:1-62,C:288-389)
2c: CATH_1c7oD01 (D:1-62,D:288-389)
2d: CATH_1c7oE01 (E:1-62,E:288-389)
2e: CATH_1c7oF01 (F:1-62,F:288-389)
2f: CATH_1c7oG01 (G:1-62,G:288-389)
2g: CATH_1c7oH01 (H:1-62,H:288-389)
2h: CATH_1c7oB01 (B:1-62,B:288-389)
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Organisms
(
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Treponema denticola. Organism_taxid: 158.
(2)
1a
1c7oA02
A:63-287
1b
1c7oC02
C:63-287
1c
1c7oD02
D:63-287
1d
1c7oE02
E:63-287
1e
1c7oF02
F:63-287
1f
1c7oG02
G:63-287
1g
1c7oH02
H:63-287
1h
1c7oB02
B:63-287
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Treponema denticola. Organism_taxid: 158.
(2)
2a
1c7oA01
A:4-62,A:288-389
2b
1c7oC01
C:1-62,C:288-389
2c
1c7oD01
D:1-62,D:288-389
2d
1c7oE01
E:1-62,E:288-389
2e
1c7oF01
F:1-62,F:288-389
2f
1c7oG01
G:1-62,G:288-389
2g
1c7oH01
H:1-62,H:288-389
2h
1c7oB01
B:1-62,B:288-389
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (548 KB)
Header - Asym.Unit
Biol.Unit 1 (141 KB)
Header - Biol.Unit 1
Biol.Unit 2 (141 KB)
Header - Biol.Unit 2
Biol.Unit 3 (141 KB)
Header - Biol.Unit 3
Biol.Unit 4 (141 KB)
Header - Biol.Unit 4
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