Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  THE CRYSTAL STRUCTURE OF BLUETONGUE VIRUS VP7
 
Authors :  D. Stuart, J. Grimes
Date :  17 Feb 95  (Deposition) - 03 Jun 95  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  1,2,3,4,5,6
Biol. Unit 1:  1,2,3  (1x)
Biol. Unit 2:  4,5,6  (1x)
Biol. Unit 3:  1 (1x),2 (1x),3 (1x),4 (1x),5 (1x),6 (1x)
Keywords :  Virus, Vp7, Trimer, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Grimes, A. K. Basak, P. Roy, D. Stuart
The Crystal Structure Of Bluetongue Virus Vp7.
Nature V. 373 167 1995
PubMed-ID: 7816101  |  Reference-DOI: 10.1038/373167A0
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BLUETONGUE VIRUS COAT PROTEIN VP7
    Chains: 1, 2, 3, 4, 5, 6
    Engineered: YES
    Organism Scientific: BLUETONGUE VIRUS
    Organism Taxid: 10900
    Strain: (SEROTYPE 10 / AMERICAN ISOLATE)

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : 123456
Biological Unit 1 (1x): 123   
Biological Unit 2 (1x):    456
Biological Unit 3 (1x): 1 (1x)2 (1x)3 (1x)4 (1x)5 (1x)6 (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1BVP)

(-) Sites  (0, 0)

(no "Site" information available for 1BVP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1BVP)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Gly 1:337 -Pro 1:338
2Gly 2:337 -Pro 2:338
3Gly 3:337 -Pro 3:338
4Gly 4:337 -Pro 4:338
5Gly 5:337 -Pro 5:338
6Gly 6:337 -Pro 6:338

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BVP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1BVP)

(-) Exons   (0, 0)

(no "Exon" information available for 1BVP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 1 from PDB  Type:PROTEIN  Length:349
 aligned with VP7_BTV10 | P69361 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         
            VP7_BTV10     1 MDTIAARALTVMRACATLQEARIVLEANVMEILGIAINRYNGLTLRGVTMRPTSLAQRNEMFFMCLDMMLSAAGINVGPISPDYTQHMATIGVLATPEIPFTTEAANEIARVTGETSTWGPARQPYGFFLETEETFQPGRWFMRAAQAVTAVVCGPDMIQVSLNAGARGDVQQIFQGRNDPMMIYLVWRRIENFAMAQGNSQQTQAGVTVSVGGVDMRAGRIIAWDGQAALHVHNPTQQNAMVQIQVVFYISMDKTLNQYPALTAEIFNVYSFRDHTWHGLRTAILNRTTLPNMLPPIFPPNDRDSILTLLLLSTLADVYTVLRPEFAIHGVNPMPGPLTRAIARAAYV 349
               SCOP domains d1bvp11 1:1-120,1:255-349 BTV vp7                                                                                       d1bvp12 1:121-254 BTV vp7, central (top) domain                                                                                       d1bvp11 1:1-120,1:255-349 BTV vp7                                                               SCOP domains
               CATH domains 1bvp101 1:1-120 Bluetongue Virus 10, subunit 1, domain 1                                                                1bvp102 1:121-253  [code=2.60.120.170, no name defined]                                                                              1bvp103 1:254-349 Bluetongue Virus 10, subunit 1, domain 3                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh..............hhhhhhh........hhhhhhhhhhhhhh.................eee............eeeeeee..eeeeee....eee.hhh......eeeeeeeeeeeeeee.....eee.....eeee..eee.....eee.....eeee......eeeeeee.eeee..........hhhhhhhhh....hhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhh.................hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bvp 1   1 MDTIAARALTVMRACATLQEARIVLEANVMEILGIAINRYNGLTLRGVTMRPTSLAQRNEMFFMCLDMMLSAAGINVGPISPDYTQHMATIGVLATPEIPFTTEAANEIARVTGETSTWGPARQPYGFFLETEETFQPGRWFMRAAQAVTAVVCGPDMIQVSLNAGARGDVQQIFQGRNDPMMIYLVWRRIENFAMAQGNSQQTQAGVTVSVGGVDMRAGRIIAWDGQAALHVHNPTQQNAMVQIQVVFYISMDKTLNQYPALTAEIFNVYSFRDHTWHGLRTAILNRTTLPNMLPPIFPPNDRDSILTLLLLSTLADVYTVLRPEFAIHGVNPMPGPLTRAIARAAYV 349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         


Chain 2 from PDB  Type:PROTEIN  Length:349
 aligned with VP7_BTV10 | P69361 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         
            VP7_BTV10     1 MDTIAARALTVMRACATLQEARIVLEANVMEILGIAINRYNGLTLRGVTMRPTSLAQRNEMFFMCLDMMLSAAGINVGPISPDYTQHMATIGVLATPEIPFTTEAANEIARVTGETSTWGPARQPYGFFLETEETFQPGRWFMRAAQAVTAVVCGPDMIQVSLNAGARGDVQQIFQGRNDPMMIYLVWRRIENFAMAQGNSQQTQAGVTVSVGGVDMRAGRIIAWDGQAALHVHNPTQQNAMVQIQVVFYISMDKTLNQYPALTAEIFNVYSFRDHTWHGLRTAILNRTTLPNMLPPIFPPNDRDSILTLLLLSTLADVYTVLRPEFAIHGVNPMPGPLTRAIARAAYV 349
               SCOP domains d1bvp21 2:1-120,2:255-349 BTV vp7                                                                                       d1bvp22 2:121-254 BTV vp7, central (top) domain                                                                                       d1bvp21 2:1-120,2:255-349 BTV vp7                                                               SCOP domains
               CATH domains 1bvp201 2:1-120 Bluetongue Virus 10, subunit 1, domain 1                                                                1bvp202 2:121-253  [code=2.60.120.170, no name defined]                                                                              1bvp203 2:254-349 Bluetongue Virus 10, subunit 1, domain 3                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh..............hhhhhhh........hhhhhhhhhhhhhh.................eee............eeeeeee..eeeeee....eee.hhh......eeeeeeeeeeeeeee.....eee.....eeee..eee.....eee.....eeee......eeeeeee.eeee..........hhhhhhhhh....hhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhh.................hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bvp 2   1 MDTIAARALTVMRACATLQEARIVLEANVMEILGIAINRYNGLTLRGVTMRPTSLAQRNEMFFMCLDMMLSAAGINVGPISPDYTQHMATIGVLATPEIPFTTEAANEIARVTGETSTWGPARQPYGFFLETEETFQPGRWFMRAAQAVTAVVCGPDMIQVSLNAGARGDVQQIFQGRNDPMMIYLVWRRIENFAMAQGNSQQTQAGVTVSVGGVDMRAGRIIAWDGQAALHVHNPTQQNAMVQIQVVFYISMDKTLNQYPALTAEIFNVYSFRDHTWHGLRTAILNRTTLPNMLPPIFPPNDRDSILTLLLLSTLADVYTVLRPEFAIHGVNPMPGPLTRAIARAAYV 349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         


Chain 3 from PDB  Type:PROTEIN  Length:349
 aligned with VP7_BTV10 | P69361 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         
            VP7_BTV10     1 MDTIAARALTVMRACATLQEARIVLEANVMEILGIAINRYNGLTLRGVTMRPTSLAQRNEMFFMCLDMMLSAAGINVGPISPDYTQHMATIGVLATPEIPFTTEAANEIARVTGETSTWGPARQPYGFFLETEETFQPGRWFMRAAQAVTAVVCGPDMIQVSLNAGARGDVQQIFQGRNDPMMIYLVWRRIENFAMAQGNSQQTQAGVTVSVGGVDMRAGRIIAWDGQAALHVHNPTQQNAMVQIQVVFYISMDKTLNQYPALTAEIFNVYSFRDHTWHGLRTAILNRTTLPNMLPPIFPPNDRDSILTLLLLSTLADVYTVLRPEFAIHGVNPMPGPLTRAIARAAYV 349
               SCOP domains d1bvp31 3:1-120,3:255-349 BTV vp7                                                                                       d1bvp32 3:121-254 BTV vp7, central (top) domain                                                                                       d1bvp31 3:1-120,3:255-349 BTV vp7                                                               SCOP domains
               CATH domains 1bvp301 3:1-120 Bluetongue Virus 10, subunit 1, domain 1                                                                1bvp302 3:121-253  [code=2.60.120.170, no name defined]                                                                              1bvp303 3:254-349 Bluetongue Virus 10, subunit 1, domain 3                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh..............hhhhhhh........hhhhhhhhhhhhhh.................eee............eeeeeee..eeeeee....eee.hhh......eeeeeeeeeeeeeee.....eee.....eeee..eee.....eee.....eeee......eeeeeee.eeee..........hhhhhhhhh....hhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhh.................hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bvp 3   1 MDTIAARALTVMRACATLQEARIVLEANVMEILGIAINRYNGLTLRGVTMRPTSLAQRNEMFFMCLDMMLSAAGINVGPISPDYTQHMATIGVLATPEIPFTTEAANEIARVTGETSTWGPARQPYGFFLETEETFQPGRWFMRAAQAVTAVVCGPDMIQVSLNAGARGDVQQIFQGRNDPMMIYLVWRRIENFAMAQGNSQQTQAGVTVSVGGVDMRAGRIIAWDGQAALHVHNPTQQNAMVQIQVVFYISMDKTLNQYPALTAEIFNVYSFRDHTWHGLRTAILNRTTLPNMLPPIFPPNDRDSILTLLLLSTLADVYTVLRPEFAIHGVNPMPGPLTRAIARAAYV 349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         


Chain 4 from PDB  Type:PROTEIN  Length:349
 aligned with VP7_BTV10 | P69361 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         
            VP7_BTV10     1 MDTIAARALTVMRACATLQEARIVLEANVMEILGIAINRYNGLTLRGVTMRPTSLAQRNEMFFMCLDMMLSAAGINVGPISPDYTQHMATIGVLATPEIPFTTEAANEIARVTGETSTWGPARQPYGFFLETEETFQPGRWFMRAAQAVTAVVCGPDMIQVSLNAGARGDVQQIFQGRNDPMMIYLVWRRIENFAMAQGNSQQTQAGVTVSVGGVDMRAGRIIAWDGQAALHVHNPTQQNAMVQIQVVFYISMDKTLNQYPALTAEIFNVYSFRDHTWHGLRTAILNRTTLPNMLPPIFPPNDRDSILTLLLLSTLADVYTVLRPEFAIHGVNPMPGPLTRAIARAAYV 349
               SCOP domains d1bvp41 4:1-120,4:255-349 BTV vp7                                                                                       d1bvp42 4:121-254 BTV vp7, central (top) domain                                                                                       d1bvp41 4:1-120,4:255-349 BTV vp7                                                               SCOP domains
               CATH domains 1bvp401 4:1-120 Bluetongue Virus 10, subunit 1, domain 1                                                                1bvp402 4:121-253  [code=2.60.120.170, no name defined]                                                                              1bvp403 4:254-349 Bluetongue Virus 10, subunit 1, domain 3                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh..............hhhhhhh........hhhhhhhhhhhhhh.................eee............eeeeeee..eeeeee....eee.hhh......eeeeeeeeeeeeeee.....eee.....eeee..eee.....eee.....eeee......eeeeeee.eeee..........hhhhhhhhh....hhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhh.................hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bvp 4   1 MDTIAARALTVMRACATLQEARIVLEANVMEILGIAINRYNGLTLRGVTMRPTSLAQRNEMFFMCLDMMLSAAGINVGPISPDYTQHMATIGVLATPEIPFTTEAANEIARVTGETSTWGPARQPYGFFLETEETFQPGRWFMRAAQAVTAVVCGPDMIQVSLNAGARGDVQQIFQGRNDPMMIYLVWRRIENFAMAQGNSQQTQAGVTVSVGGVDMRAGRIIAWDGQAALHVHNPTQQNAMVQIQVVFYISMDKTLNQYPALTAEIFNVYSFRDHTWHGLRTAILNRTTLPNMLPPIFPPNDRDSILTLLLLSTLADVYTVLRPEFAIHGVNPMPGPLTRAIARAAYV 349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         


Chain 5 from PDB  Type:PROTEIN  Length:349
 aligned with VP7_BTV10 | P69361 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         
            VP7_BTV10     1 MDTIAARALTVMRACATLQEARIVLEANVMEILGIAINRYNGLTLRGVTMRPTSLAQRNEMFFMCLDMMLSAAGINVGPISPDYTQHMATIGVLATPEIPFTTEAANEIARVTGETSTWGPARQPYGFFLETEETFQPGRWFMRAAQAVTAVVCGPDMIQVSLNAGARGDVQQIFQGRNDPMMIYLVWRRIENFAMAQGNSQQTQAGVTVSVGGVDMRAGRIIAWDGQAALHVHNPTQQNAMVQIQVVFYISMDKTLNQYPALTAEIFNVYSFRDHTWHGLRTAILNRTTLPNMLPPIFPPNDRDSILTLLLLSTLADVYTVLRPEFAIHGVNPMPGPLTRAIARAAYV 349
               SCOP domains d1bvp51 5:1-120,5:255-349 BTV vp7                                                                                       d1bvp52 5:121-254 BTV vp7, central (top) domain                                                                                       d1bvp51 5:1-120,5:255-349 BTV vp7                                                               SCOP domains
               CATH domains 1bvp501 5:1-120 Bluetongue Virus 10, subunit 1, domain 1                                                                1bvp502 5:121-253  [code=2.60.120.170, no name defined]                                                                              1bvp503 5:254-349 Bluetongue Virus 10, subunit 1, domain 3                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh..............hhhhhhh........hhhhhhhhhhhhhh.................eee............eeeeeee..eeeeee....eee.hhh......eeeeeeeeeeeeeee.....eee.....eeee..eee.....eee.....eeee......eeeeeee.eeee..........hhhhhhhhh....hhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhh.................hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bvp 5   1 MDTIAARALTVMRACATLQEARIVLEANVMEILGIAINRYNGLTLRGVTMRPTSLAQRNEMFFMCLDMMLSAAGINVGPISPDYTQHMATIGVLATPEIPFTTEAANEIARVTGETSTWGPARQPYGFFLETEETFQPGRWFMRAAQAVTAVVCGPDMIQVSLNAGARGDVQQIFQGRNDPMMIYLVWRRIENFAMAQGNSQQTQAGVTVSVGGVDMRAGRIIAWDGQAALHVHNPTQQNAMVQIQVVFYISMDKTLNQYPALTAEIFNVYSFRDHTWHGLRTAILNRTTLPNMLPPIFPPNDRDSILTLLLLSTLADVYTVLRPEFAIHGVNPMPGPLTRAIARAAYV 349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         


Chain 6 from PDB  Type:PROTEIN  Length:349
 aligned with VP7_BTV10 | P69361 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340         
            VP7_BTV10     1 MDTIAARALTVMRACATLQEARIVLEANVMEILGIAINRYNGLTLRGVTMRPTSLAQRNEMFFMCLDMMLSAAGINVGPISPDYTQHMATIGVLATPEIPFTTEAANEIARVTGETSTWGPARQPYGFFLETEETFQPGRWFMRAAQAVTAVVCGPDMIQVSLNAGARGDVQQIFQGRNDPMMIYLVWRRIENFAMAQGNSQQTQAGVTVSVGGVDMRAGRIIAWDGQAALHVHNPTQQNAMVQIQVVFYISMDKTLNQYPALTAEIFNVYSFRDHTWHGLRTAILNRTTLPNMLPPIFPPNDRDSILTLLLLSTLADVYTVLRPEFAIHGVNPMPGPLTRAIARAAYV 349
               SCOP domains d1bvp61 6:1-120,6:255-349 BTV vp7                                                                                       d1bvp62 6:121-254 BTV vp7, central (top) domain                                                                                       d1bvp61 6:1-120,6:255-349 BTV vp7                                                               SCOP domains
               CATH domains 1bvp601 6:1-120 Bluetongue Virus 10, subunit 1, domain 1                                                                1bvp602 6:121-253  [code=2.60.120.170, no name defined]                                                                              1bvp603 6:254-349 Bluetongue Virus 10, subunit 1, domain 3                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh..............hhhhhhh........hhhhhhhhhhhhhh.................eee............eeeeeee..eeeeee....eee.hhh......eeeeeeeeeeeeeee.....eee.....eeee..eee.....eee.....eeee......eeeeeee.eeee..........hhhhhhhhh....hhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhh.................hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1bvp 6   1 MDTIAARALTVMRACATLQEARIVLEANVMEILGIAINRYNGLTLRGVTMRPTSLAQRNEMFFMCLDMMLSAAGINVGPISPDYTQHMATIGVLATPEIPFTTEAANEIARVTGETSTWGPARQPYGFFLETEETFQPGRWFMRAAQAVTAVVCGPDMIQVSLNAGARGDVQQIFQGRNDPMMIYLVWRRIENFAMAQGNSQQTQAGVTVSVGGVDMRAGRIIAWDGQAALHVHNPTQQNAMVQIQVVFYISMDKTLNQYPALTAEIFNVYSFRDHTWHGLRTAILNRTTLPNMLPPIFPPNDRDSILTLLLLSTLADVYTVLRPEFAIHGVNPMPGPLTRAIARAAYV 349
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Fold: A virus capsid protein alpha-helical domain (4)
(-)
Superfamily: A virus capsid protein alpha-helical domain (4)
(-)
Family: Orbivirus capsid (2)
(-)
Protein domain: BTV vp7 (2)
(-)
Bluetongue virus [TaxId: 40051] (2)
1ad1bvp111:1-120,1:255-349
1bd1bvp212:1-120,2:255-349
1cd1bvp313:1-120,3:255-349
1dd1bvp414:1-120,4:255-349
1ed1bvp515:1-120,5:255-349
1fd1bvp616:1-120,6:255-349
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (3, 18)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BVP)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain 1,2,3,4,5,6   (VP7_BTV10 | P69361)
molecular function
    GO:0046789    host cell surface receptor binding    Interacting selectively and non-covalently with a receptor on the host cell surface.
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0019064    fusion of virus membrane with host plasma membrane    Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0039624    viral outer capsid    The outer layer of a double or triple concentric icosahedral capsid. Outer capsids are part of reoviridae and cystoviridae virions.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1bvp)
 
  Sites
(no "Sites" information available for 1bvp)
 
  Cis Peptide Bonds
    Gly 1:337 - Pro 1:338   [ RasMol ]  
    Gly 2:337 - Pro 2:338   [ RasMol ]  
    Gly 3:337 - Pro 3:338   [ RasMol ]  
    Gly 4:337 - Pro 4:338   [ RasMol ]  
    Gly 5:337 - Pro 5:338   [ RasMol ]  
    Gly 6:337 - Pro 6:338   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Biol. Unit 1 PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1bvp
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  VP7_BTV10 | P69361
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  VP7_BTV10 | P69361
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1BVP)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1BVP)