PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1BAK
Asym. Unit
Info
Asym.Unit (676 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SIGNAL TRANSDUCTION PLECKSTRIN HOMOLOGY DOMAIN OF G-PROTEIN COUPLED RECEPTOR KINASE 2 (BETA-ADRENERGIC RECEPTOR KINASE 1), C-TERMINAL EXTENDED, NMR, 20 STRUCTURES
Authors
:
D. Fushman, D. Cowburn
Date
:
21 Nov 97 (Deposition) - 25 Feb 98 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Pleckstrin Homology Domain, Ph Domain, Signal Transduction, G-Beta-Gamma Binding Domain, Beta-Adrenergic Receptor Kinase, Beta-Ark, G-Protein Coupled Receptor Kinase (Grk-2), Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Fushman, T. Najmabadi-Haske, S. Cahill, J. Zheng, H. Levine 3Rd. , D. Cowburn
The Solution Structure And Dynamics Of The Pleckstrin Homology Domain Of G Protein-Coupled Receptor Kinase 2 (Beta-Adrenergic Receptor Kinase 1). A Binding Partner Of Gbetagamma Subunits.
J. Biol. Chem. V. 273 2835 1998
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_040379 (R578Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_040379
R
578
Q
ARBK1_HUMAN
Unclassified
---
A
R
578
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PH_DOMAIN (A:558-652)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PH_DOMAIN
PS50003
PH domain profile.
ARBK1_HUMAN
558-652
1
A:558-652
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.13l (A:552-552)
Exon 1.14a (A:552-597)
Exon 1.14d (A:598-635)
Exon 1.15c (A:636-670)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.13g/1.13l
2: Boundary 1.13l/1.14a
3: Boundary 1.14a/1.14d
4: Boundary 1.14d/1.15c
5: Boundary 1.15c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000308595
1a
ENSE00001356365
chr11:
67033881-67034283
403
ARBK1_HUMAN
1-38
38
0
-
-
1.3b
ENST00000308595
3b
ENSE00001327605
chr11:
67044743-67044819
77
ARBK1_HUMAN
38-64
27
0
-
-
1.4
ENST00000308595
4
ENSE00001186794
chr11:
67046671-67046744
74
ARBK1_HUMAN
64-88
25
0
-
-
1.5a
ENST00000308595
5a
ENSE00001186790
chr11:
67046889-67046990
102
ARBK1_HUMAN
89-122
34
0
-
-
1.6
ENST00000308595
6
ENSE00001186784
chr11:
67047097-67047171
75
ARBK1_HUMAN
123-147
25
0
-
-
1.7
ENST00000308595
7
ENSE00001186778
chr11:
67047310-67047371
62
ARBK1_HUMAN
148-168
21
0
-
-
1.8b
ENST00000308595
8b
ENSE00001186774
chr11:
67048203-67048254
52
ARBK1_HUMAN
168-185
18
0
-
-
1.8d
ENST00000308595
8d
ENSE00001186767
chr11:
67048564-67048655
92
ARBK1_HUMAN
186-216
31
0
-
-
1.9a
ENST00000308595
9a
ENSE00001186763
chr11:
67048930-67049029
100
ARBK1_HUMAN
216-249
34
0
-
-
1.10a
ENST00000308595
10a
ENSE00001618837
chr11:
67049121-67049199
79
ARBK1_HUMAN
250-276
27
0
-
-
1.11a
ENST00000308595
11a
ENSE00001186756
chr11:
67049293-67049423
131
ARBK1_HUMAN
276-319
44
0
-
-
1.11f
ENST00000308595
11f
ENSE00001186750
chr11:
67049742-67049836
95
ARBK1_HUMAN
320-351
32
0
-
-
1.11i
ENST00000308595
11i
ENSE00001186745
chr11:
67049906-67050013
108
ARBK1_HUMAN
351-387
37
0
-
-
1.12a
ENST00000308595
12a
ENSE00001186741
chr11:
67050223-67050289
67
ARBK1_HUMAN
387-409
23
0
-
-
1.13a
ENST00000308595
13a
ENSE00001186735
chr11:
67050599-67050699
101
ARBK1_HUMAN
410-443
34
0
-
-
1.13e
ENST00000308595
13e
ENSE00001186730
chr11:
67051178-67051244
67
ARBK1_HUMAN
443-465
23
0
-
-
1.13g
ENST00000308595
13g
ENSE00001186725
chr11:
67051325-67051420
96
ARBK1_HUMAN
466-497
32
0
-
-
1.13l
ENST00000308595
13l
ENSE00001186721
chr11:
67051682-67051844
163
ARBK1_HUMAN
498-552
55
1
A:552-552
1
1.14a
ENST00000308595
14a
ENSE00001186716
chr11:
67052318-67052454
137
ARBK1_HUMAN
552-597
46
1
A:552-597
46
1.14d
ENST00000308595
14d
ENSE00001186711
chr11:
67052546-67052659
114
ARBK1_HUMAN
598-635
38
1
A:598-635
38
1.15c
ENST00000308595
15c
ENSE00002193440
chr11:
67052757-67054027
1271
ARBK1_HUMAN
636-689
54
1
A:636-670
35
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1baka_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
(7)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1baka_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1bakA00 (A:552-670)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
Human (Homo sapiens)
(85)
1a
1bakA00
A:552-670
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (676 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1BAK
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help