1B8D - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF A PHYCOUROBILIN-CONTAINING PHYCOERYTHRIN

Authors :   S. Ritter, R. G. Hiller, P. M. Wrench, W. Welte, K. Diederichs

Date :   29 Jan 99 (Deposition) - 18 Feb 99 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,G,K,L
Biol. Unit 1: A,B,G,K,L  (3x)

Keywords :   Light-Harvesting Complex, Red Algae, Phycobiliprotein, Photosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Ritter, R. G. Hiller, P. M. Wrench, W. Welte, K. Diederichs
Crystal Structure Of A Phycourobilin-Containing Phycoerythrin At 1. 90-A Resolution.
J. Struct. Biol. V. 126 86 1999
PubMed-ID: 10388620 | Reference-DOI: 10.1006/JSBI.1999.4106
(for further references see the PDB file header)

Molecule 1 - PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (ALPHA CHAIN) )
	Chains	:	A, K
	Organelle	:	RHODOPLAST
	Organism Scientific	:	GRIFFITHSIA MONILIS
	Organism Taxid	:	42003
	Other Details	:	PHYCOERYTHROBILIN PHYCOUROBILIN N-GAMMA METHYLATION OF ASN B72 AND ASN L72
	Other Details - Source	:	THE PHYCOBILISOMES ARE LOCATED ON THE STROMAL SIDE OF THE THYLAKOID MEMBRANES.

Molecule 2 - PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (BETA CHAIN))
	Chains	:	B, L
	Organelle	:	RHODOPLAST
	Organism Scientific	:	GRIFFITHSIA MONILIS
	Organism Taxid	:	42003
	Other Details	:	PHYCOERYTHROBILIN PHYCOUROBILIN N-GAMMA METHYLATION OF ASN B72 AND ASN L72
	Other Details - Source	:	THE PHYCOBILISOMES ARE LOCATED ON THE STROMAL SIDE OF THE THYLAKOID MEMBRANES.

Molecule 3 - PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (GAMMA CHAIN) )
	Chains	:	G
	Organelle	:	RHODOPLAST
	Organism Scientific	:	GRIFFITHSIA MONILIS
	Organism Taxid	:	42003

		1	2	3	4	5
Asymmetric Unit	:	A	B	G	K	L
Biological Unit 1 (3x)	:	A	B	G	K	L

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 14)

No.	Name	Count	Type	Full Name
1	MEN	2	Mod. Amino Acid	N-METHYL ASPARAGINE
2	PEB	8	Ligand/Ion	PHYCOERYTHROBILIN
3	PUB	2	Ligand/Ion	PHYCOUROBILIN
4	UNK	2	Mod. Amino Acid

Biological Unit 1 (3, 36)

No.	Name	Count	Type	Full Name
1	MEN	6	Mod. Amino Acid	N-METHYL ASPARAGINE
2	PEB	24	Ligand/Ion	PHYCOERYTHROBILIN
3	PUB	6	Ligand/Ion	PHYCOUROBILIN
4	UNK	-1	Mod. Amino Acid

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:60 , ALA A:72 , GLY A:73 , LYS A:78 , LYS A:81 , CYS A:82 , ARG A:84 , ASP A:85 , HIS A:88 , TYR A:89 , TRP A:108 , TYR A:117 , LEU A:120 , LEU A:122 , ALA A:126 , TYR A:127 , HOH A:314 , HOH A:345 , HOH A:549 , ILE B:67 , TYR B:74 , THR B:75 , ASN B:76 , MET B:79 , HOH B:456	BINDING SITE FOR RESIDUE PEB A 201
02	AC2	SOFTWARE	ASN A:47 , ALA A:50 , GLU A:54 , THR A:134 , ARG A:137 , CYS A:139 , ARG A:142 , ASP A:143 , MET A:144 , HOH A:383 , HOH A:470 , HOH A:546 , SER B:147	BINDING SITE FOR RESIDUE PEB A 202
03	AC3	SOFTWARE	MET B:59 , MEN B:72 , CYS B:73 , ARG B:77 , ARG B:78 , ALA B:81 , CYS B:82 , ARG B:84 , ASP B:85 , ILE B:88 , LEU B:113 , LEU B:120 , VAL B:122 , PRO B:123 , SER B:126 , SER B:127 , HOH B:465 , HOH B:548 , TYR G:2	BINDING SITE FOR RESIDUE PEB B 203
04	AC4	SOFTWARE	GLN A:28 , ASN B:35 , LYS B:36 , LEU B:38 , ASP B:39 , ILE B:142 , ASN B:144 , VAL B:153 , ALA B:154 , GLY B:156 , CYS B:158 , HOH B:402 , HOH B:482 , ARG K:33 , GLN K:147	BINDING SITE FOR RESIDUE PEB B 204
05	AC5	SOFTWARE	CYS B:50 , ASP B:54 , SER B:57 , GLY B:58 , CYS B:61 , GLU B:62 , ARG B:129 , ILE B:133 , ALA B:136 , THR B:137 , THR B:145 , ALA B:146 , SER B:147 , GLY B:148 , HOH B:467 , HOH B:555 , HOH B:626	BINDING SITE FOR RESIDUE PUB B 205
06	AC6	SOFTWARE	ALA K:72 , GLY K:73 , LYS K:78 , LYS K:81 , CYS K:82 , ARG K:84 , ASP K:85 , HIS K:88 , TYR K:89 , TRP K:108 , TYR K:117 , LEU K:120 , LEU K:122 , PRO K:123 , ALA K:126 , TYR K:127 , HOH K:457 , HOH K:479 , HOH K:571 , ILE L:67 , THR L:75 , ASN L:76 , MET L:79 , HOH L:336 , HOH L:363	BINDING SITE FOR RESIDUE PEB K 206
07	AC7	SOFTWARE	ASN K:47 , GLU K:54 , THR K:134 , ARG K:137 , LEU K:138 , CYS K:139 , ARG K:142 , ASP K:143 , MET K:144 , HOH K:330 , HOH K:399 , THR L:143 , GLY L:156 , CYS L:158 , GLN L:159 , PEB L:209	BINDING SITE FOR RESIDUE PEB K 207
08	AC8	SOFTWARE	TYR G:99 , MET L:59 , LEU L:66 , MEN L:72 , CYS L:73 , ARG L:77 , ARG L:78 , ALA L:81 , CYS L:82 , ARG L:84 , ASP L:85 , ILE L:88 , ARG L:108 , LEU L:113 , LEU L:120 , VAL L:122 , PRO L:123 , SER L:126 , SER L:127 , HOH L:438 , HOH L:439	BINDING SITE FOR RESIDUE PEB L 208
09	AC9	SOFTWARE	ARG A:33 , GLN A:147 , GLN K:28 , PEB K:207 , ASN L:35 , LYS L:36 , LEU L:38 , ASP L:39 , ILE L:142 , THR L:143 , ASN L:144 , VAL L:153 , ALA L:154 , ALA L:155 , GLY L:156 , CYS L:158 , HOH L:440 , HOH L:525 , HOH L:534 , HOH L:590 , HOH L:598	BINDING SITE FOR RESIDUE PEB L 209
10	BC1	SOFTWARE	CYS L:50 , ASP L:54 , GLY L:58 , CYS L:61 , GLU L:62 , ARG L:129 , ILE L:133 , ALA L:136 , THR L:137 , ALA L:146 , SER L:147 , GLY L:148 , HOH L:468 , HOH L:584	BINDING SITE FOR RESIDUE PUB L 210

(no "SS Bond" information available for 1B8D)

Asymmetric Unit

No.	Residues
1	Val A:140	-	Pro A:141
2	Val K:140	-	Pro K:141

(no "SAP(SNP)/Variant" information available for 1B8D)

(no "PROSITE Motif" information available for 1B8D)

(no "Exon" information available for 1B8D)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:164
 aligned with PHEA_GRIMO | O36005 from UniProtKB/Swiss-Prot  Length:164

    Alignment length:164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    
           PHEA_GRIMO     1 MKSVITTTISAADAAGRFPSSSDLESIQGNIQRAAARLEAAQKLSGNHEAVVKEAGDACFAKYSYLKNAGEAGDSPEKINKCYRDIDHYMRLINYSLVVGGTGPVDEWGIAGSREVYRALNLPGSAYIAAFTFTRDRLCVPRDMSSQAGVEFTSALDYVINSLC 164
               SCOP domains d1b8da_ A: Phycoerythrin alpha subunit                                                                                                                               SCOP domains
               CATH domains 1b8dA00 A:1-164 Phycocyanins                                                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhh........hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh....hhhhhhh....hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1b8d A   1 MKSVITTTISAADAAGRFPSSSDLESIQGNIQRAAARLEAAQKLSGNHEAVVKEAGDACFAKYSYLKNAGEAGDSPEKINKCYRDIDHYMRLINYSLVVGGTGPVDEWGIAGSREVYRALNLPGSAYIAAFTFTRDRLCVPRDMSSQAGVEFTSALDYVINSLC 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain B from PDB  Type:PROTEIN  Length:177
 aligned with PHEB_GRIMO | O36004 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:177
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       
           PHEB_GRIMO     1 MLDAFSRVVVTSDAKAAYVGGSDLQSLKSFINDGNKRLDAVNYIVSNASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYVSYALLAGDSSVLDDRCLNGLKETYIALGVPTASSSRAVSIMKATATAFITNTASGRKVEVAAGDCQALQAEAASYFDKVGSSID 177
               SCOP domains d1b8db_ B: Phycoerythrin beta subunit                                                                                                                                             SCOP domains
               CATH domains 1b8dB00 B:1-177 Phycocyanins                                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh......hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhh........hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh....hhhhhhhh...hhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1b8d B   1 MLDAFSRVVVTSDAKAAYVGGSDLQSLKSFINDGNKRLDAVNYIVSNASCIVSDAVSGMICENPGLIAPGGnCYTNRRMAACLRDGEIILRYVSYALLAGDSSVLDDRCLNGLKETYIALGVPTASSSRAVSIMKATATAFITNTASGRKVEVAAGDCQALQAEAASYFDKVGSSID 177
                                    10        20        30        40        50        60        70 |      80        90       100       110       120       130       140       150       160       170       
                                                                                                  72-MEN

Chain G from PDB  Type:PROTEIN  Length:5
                                     
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                 1b8d G   1 GYxYx 100
                              |||
                              3-UNK
                              99|
                              100-UNK

Chain K from PDB  Type:PROTEIN  Length:164
 aligned with PHEA_GRIMO | O36005 from UniProtKB/Swiss-Prot  Length:164

    Alignment length:164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    
           PHEA_GRIMO     1 MKSVITTTISAADAAGRFPSSSDLESIQGNIQRAAARLEAAQKLSGNHEAVVKEAGDACFAKYSYLKNAGEAGDSPEKINKCYRDIDHYMRLINYSLVVGGTGPVDEWGIAGSREVYRALNLPGSAYIAAFTFTRDRLCVPRDMSSQAGVEFTSALDYVINSLC 164
               SCOP domains d1b8dk_ K: Phycoerythrin alpha subunit                                                                                                                               SCOP domains
               CATH domains 1b8dK00 K:1-164 Phycocyanins                                                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhh........hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh....hhhhhhhh...hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1b8d K   1 MKSVITTTISAADAAGRFPSSSDLESIQGNIQRAAARLEAAQKLSGNHEAVVKEAGDACFAKYSYLKNAGEAGDSPEKINKCYRDIDHYMRLINYSLVVGGTGPVDEWGIAGSREVYRALNLPGSAYIAAFTFTRDRLCVPRDMSSQAGVEFTSALDYVINSLC 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Chain L from PDB  Type:PROTEIN  Length:177
 aligned with PHEB_GRIMO | O36004 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:177
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       
           PHEB_GRIMO     1 MLDAFSRVVVTSDAKAAYVGGSDLQSLKSFINDGNKRLDAVNYIVSNASCIVSDAVSGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYVSYALLAGDSSVLDDRCLNGLKETYIALGVPTASSSRAVSIMKATATAFITNTASGRKVEVAAGDCQALQAEAASYFDKVGSSID 177
               SCOP domains d1b8dl_ L: Phycoerythrin beta subunit                                                                                                                                             SCOP domains
               CATH domains 1b8dL00 L:1-177 Phycocyanins                                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh......hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhh........hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh....hhhhhhhh...hhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1b8d L   1 MLDAFSRVVVTSDAKAAYVGGSDLQSLKSFINDGNKRLDAVNYIVSNASCIVSDAVSGMICENPGLIAPGGnCYTNRRMAACLRDGEIILRYVSYALLAGDSSVLDDRCLNGLKETYIALGVPTASSSRAVSIMKATATAFITNTASGRKVEVAAGDCQALQAEAASYFDKVGSSID 177
                                    10        20        30        40        50        60        70 |      80        90       100       110       120       130       140       150       160       170       
                                                                                                  72-MEN

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Globin-like (1351)

Superfamily: Globin-like (1308)

Family: Phycocyanin-like phycobilisome proteins (65)

Protein domain: Phycoerythrin alpha subunit (3)

Red alga (Griffithsia monilis) [TaxId: 42003] (1)

1a	d1b8da_	A:
1b	d1b8dk_	K:

Protein domain: Phycoerythrin beta subunit (6)

Red alga (Griffithsia monilis) [TaxId: 42003] (1)

2a	d1b8db_	B:
2b	d1b8dl_	L:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Globin-like (786)

Homologous Superfamily: Phycocyanins (32)

Griffithsia monilis. Organism_taxid: 42003. (1)

1a	1b8dB00	B:1-177
1b	1b8dL00	L:1-177
1c	1b8dA00	A:1-164
1d	1b8dK00	K:1-164

(no "Pfam Domain" information available for 1B8D)

Asymmetric Unit(hide GO term definitions)

Chain A,K (PHEA_GRIMO | O36005)

biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0015979	photosynthesis	The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
	GO:0018298	protein-chromophore linkage	The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009535	chloroplast thylakoid membrane	The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0030089	phycobilisome	Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.
	GO:0009579	thylakoid	A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

Chain B,L (PHEB_GRIMO | O36004)

biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0015979	photosynthesis	The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
	GO:0018298	protein-chromophore linkage	The covalent or noncovalent attachment of a chromophore to a protein.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009535	chloroplast thylakoid membrane	The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0030089	phycobilisome	Any of the granules, approximately 32 nm x 48 nm and consisting of highly aggregated phycobiliproteins, that are attached in arrays to the external face of a thylakoid membrane in algae of the phyla Cyanophyta and Rhodophyta, where they function as light-harvesting devices in photosynthesis. Excitation energy in the phycobilisome flows in the sequence: phycoerythrin, phycocyanin, allophycocyanin before passing to the antenna chlorophyll of photosystem II.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.
	GO:0009579	thylakoid	A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		MEN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PEB	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PUB	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		UNK	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Val A:140 - Pro A:141	[ RasMol ]
		Val K:140 - Pro K:141	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1b8d
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	PHEA_GRIMO \| O36005
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	PHEB_GRIMO \| O36004
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	PHEA_GRIMO \| O36005
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	PHEB_GRIMO \| O36004
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Entries Sharing at Least One Protein Chain" available for 1B8D)

(no "Related Entries Specified in the PDB File" available for 1B8D)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 14)

Sites (10, 10)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (1, 4)

Pfam Domains (0, 0)

Gene Ontology (9, 18)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File