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1B8D
Asym. Unit
Info
Asym.Unit (159 KB)
Biol.Unit 1 (447 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PHYCOUROBILIN-CONTAINING PHYCOERYTHRIN
Authors
:
S. Ritter, R. G. Hiller, P. M. Wrench, W. Welte, K. Diederichs
Date
:
29 Jan 99 (Deposition) - 18 Feb 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,G,K,L
Biol. Unit 1: A,B,G,K,L (3x)
Keywords
:
Light-Harvesting Complex, Red Algae, Phycobiliprotein, Photosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Ritter, R. G. Hiller, P. M. Wrench, W. Welte, K. Diederichs
Crystal Structure Of A Phycourobilin-Containing Phycoerythrin At 1. 90-A Resolution.
J. Struct. Biol. V. 126 86 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: N-METHYL ASPARAGINE (MENa)
1b: N-METHYL ASPARAGINE (MENb)
2a: PHYCOERYTHROBILIN (PEBa)
2b: PHYCOERYTHROBILIN (PEBb)
2c: PHYCOERYTHROBILIN (PEBc)
2d: PHYCOERYTHROBILIN (PEBd)
2e: PHYCOERYTHROBILIN (PEBe)
2f: PHYCOERYTHROBILIN (PEBf)
2g: PHYCOERYTHROBILIN (PEBg)
2h: PHYCOERYTHROBILIN (PEBh)
3a: PHYCOUROBILIN (PUBa)
3b: PHYCOUROBILIN (PUBb)
4a: (UNKa)
4b: (UNKb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MEN
2
Mod. Amino Acid
N-METHYL ASPARAGINE
2
PEB
8
Ligand/Ion
PHYCOERYTHROBILIN
3
PUB
2
Ligand/Ion
PHYCOUROBILIN
4
UNK
2
Mod. Amino Acid
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:60 , ALA A:72 , GLY A:73 , LYS A:78 , LYS A:81 , CYS A:82 , ARG A:84 , ASP A:85 , HIS A:88 , TYR A:89 , TRP A:108 , TYR A:117 , LEU A:120 , LEU A:122 , ALA A:126 , TYR A:127 , HOH A:314 , HOH A:345 , HOH A:549 , ILE B:67 , TYR B:74 , THR B:75 , ASN B:76 , MET B:79 , HOH B:456
BINDING SITE FOR RESIDUE PEB A 201
02
AC2
SOFTWARE
ASN A:47 , ALA A:50 , GLU A:54 , THR A:134 , ARG A:137 , CYS A:139 , ARG A:142 , ASP A:143 , MET A:144 , HOH A:383 , HOH A:470 , HOH A:546 , SER B:147
BINDING SITE FOR RESIDUE PEB A 202
03
AC3
SOFTWARE
MET B:59 , MEN B:72 , CYS B:73 , ARG B:77 , ARG B:78 , ALA B:81 , CYS B:82 , ARG B:84 , ASP B:85 , ILE B:88 , LEU B:113 , LEU B:120 , VAL B:122 , PRO B:123 , SER B:126 , SER B:127 , HOH B:465 , HOH B:548 , TYR G:2
BINDING SITE FOR RESIDUE PEB B 203
04
AC4
SOFTWARE
GLN A:28 , ASN B:35 , LYS B:36 , LEU B:38 , ASP B:39 , ILE B:142 , ASN B:144 , VAL B:153 , ALA B:154 , GLY B:156 , CYS B:158 , HOH B:402 , HOH B:482 , ARG K:33 , GLN K:147
BINDING SITE FOR RESIDUE PEB B 204
05
AC5
SOFTWARE
CYS B:50 , ASP B:54 , SER B:57 , GLY B:58 , CYS B:61 , GLU B:62 , ARG B:129 , ILE B:133 , ALA B:136 , THR B:137 , THR B:145 , ALA B:146 , SER B:147 , GLY B:148 , HOH B:467 , HOH B:555 , HOH B:626
BINDING SITE FOR RESIDUE PUB B 205
06
AC6
SOFTWARE
ALA K:72 , GLY K:73 , LYS K:78 , LYS K:81 , CYS K:82 , ARG K:84 , ASP K:85 , HIS K:88 , TYR K:89 , TRP K:108 , TYR K:117 , LEU K:120 , LEU K:122 , PRO K:123 , ALA K:126 , TYR K:127 , HOH K:457 , HOH K:479 , HOH K:571 , ILE L:67 , THR L:75 , ASN L:76 , MET L:79 , HOH L:336 , HOH L:363
BINDING SITE FOR RESIDUE PEB K 206
07
AC7
SOFTWARE
ASN K:47 , GLU K:54 , THR K:134 , ARG K:137 , LEU K:138 , CYS K:139 , ARG K:142 , ASP K:143 , MET K:144 , HOH K:330 , HOH K:399 , THR L:143 , GLY L:156 , CYS L:158 , GLN L:159 , PEB L:209
BINDING SITE FOR RESIDUE PEB K 207
08
AC8
SOFTWARE
TYR G:99 , MET L:59 , LEU L:66 , MEN L:72 , CYS L:73 , ARG L:77 , ARG L:78 , ALA L:81 , CYS L:82 , ARG L:84 , ASP L:85 , ILE L:88 , ARG L:108 , LEU L:113 , LEU L:120 , VAL L:122 , PRO L:123 , SER L:126 , SER L:127 , HOH L:438 , HOH L:439
BINDING SITE FOR RESIDUE PEB L 208
09
AC9
SOFTWARE
ARG A:33 , GLN A:147 , GLN K:28 , PEB K:207 , ASN L:35 , LYS L:36 , LEU L:38 , ASP L:39 , ILE L:142 , THR L:143 , ASN L:144 , VAL L:153 , ALA L:154 , ALA L:155 , GLY L:156 , CYS L:158 , HOH L:440 , HOH L:525 , HOH L:534 , HOH L:590 , HOH L:598
BINDING SITE FOR RESIDUE PEB L 209
10
BC1
SOFTWARE
CYS L:50 , ASP L:54 , GLY L:58 , CYS L:61 , GLU L:62 , ARG L:129 , ILE L:133 , ALA L:136 , THR L:137 , ALA L:146 , SER L:147 , GLY L:148 , HOH L:468 , HOH L:584
BINDING SITE FOR RESIDUE PUB L 210
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1b8da_ (A:)
1b: SCOP_d1b8dk_ (K:)
2a: SCOP_d1b8db_ (B:)
2b: SCOP_d1b8dl_ (L:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Phycocyanin-like phycobilisome proteins
(65)
Protein domain
:
Phycoerythrin alpha subunit
(3)
Red alga (Griffithsia monilis) [TaxId: 42003]
(1)
1a
d1b8da_
A:
1b
d1b8dk_
K:
Protein domain
:
Phycoerythrin beta subunit
(6)
Red alga (Griffithsia monilis) [TaxId: 42003]
(1)
2a
d1b8db_
B:
2b
d1b8dl_
L:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1b8dB00 (B:1-177)
1b: CATH_1b8dL00 (L:1-177)
1c: CATH_1b8dA00 (A:1-164)
1d: CATH_1b8dK00 (K:1-164)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Phycocyanins
(32)
Griffithsia monilis. Organism_taxid: 42003.
(1)
1a
1b8dB00
B:1-177
1b
1b8dL00
L:1-177
1c
1b8dA00
A:1-164
1d
1b8dK00
K:1-164
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain L
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set fontsize 20
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (159 KB)
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