1AVC - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   BOVINE ANNEXIN VI (CALCIUM-BOUND)

Authors :   A. J. Avila-Sakar, C. E. Creutz, R. H. Kretsinger

Date :   16 Sep 97 (Deposition) - 28 Jan 98 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.90

Chains :   Asym./Biol. Unit : A

Keywords :   Annexin, Calcium-Binding, Membrane-Binding, Calcium/Phospholipid-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. J. Avila-Sakar, C. E. Creutz, R. H. Kretsinger
Crystal Structure Of Bovine Annexin Vi In A Calcium-Bound State.
Biochim. Biophys. Acta V. 1387 103 1998
PubMed-ID: 9748523 | Reference-DOI: 10.1016/S0167-4838(98)00111-3
(for further references see the PDB file header)

Molecule 1 - ANNEXIN VI
	Cellular Location	:	MEMBRANE-PERIPHERAL
	Chains	:	A
	Organ	:	LIVER
	Organism Common	:	CATTLE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913
	Synonym	:	P68, PROTEIN III, 67-KDA-CALCIMEDIN, LIPOCORTIN VI, 67-KDA-CALELECTRIN, CHROMOBINDIN 20, CALPHOBINDIN II

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 6)

No.	Name	Count	Type	Full Name
1	CA	6	Ligand/Ion	CALCIUM ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MET A:376 , GLY A:378 , LEU A:379 , GLY A:380 , THR A:381 , GLU A:420	BINDING SITE FOR RESIDUE CA A 674
2	AC2	SOFTWARE	LYS A:75 , LEU A:78 , THR A:79 , GLU A:83	BINDING SITE FOR RESIDUE CA A 675
3	AC3	SOFTWARE	MET A:264 , GLY A:266 , LEU A:267 , GLY A:268 , THR A:269 , ASP A:308	BINDING SITE FOR RESIDUE CA A 676
4	AC4	SOFTWARE	GLY A:188 , GLU A:189 , LYS A:191 , GLY A:193 , THR A:194 , SER A:229 , GLU A:233	BINDING SITE FOR RESIDUE CA A 677
5	AC5	SOFTWARE	MET A:612 , GLY A:614 , ALA A:615 , GLY A:616 , THR A:617 , ASP A:656	BINDING SITE FOR RESIDUE CA A 678
6	AC6	SOFTWARE	MET A:448 , GLU A:449 , GLY A:450 , GLY A:452 , ASP A:492	BINDING SITE FOR RESIDUE CA A 679

(no "SS Bond" information available for 1AVC)

(no "Cis Peptide Bond" information available for 1AVC)

(no "SAP(SNP)/Variant" information available for 1AVC)

Asymmetric/Biological Unit (1, 7)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ANNEXIN	PS00223	Annexins repeated domain signature.	ANXA6_BOVIN	37-89 109-161 193-245 268-320 380-432 452-504 616-668	7	A:37-89 A:109-161 A:193-245 A:268-320 A:380-432 A:452-504 A:616-668

Asymmetric/Biological Unit (24, 24)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSBTAT00000019719	1	ENSBTAE00000401151	chr7:62025853-62025783	71	ANXA6_BOVIN	-	0	0	-	-
1.2	ENSBTAT00000019719	2	ENSBTAE00000430703	chr7:62013353-62013310	44	ANXA6_BOVIN	1-6	6	0	-	-
1.3b	ENSBTAT00000019719	3b	ENSBTAE00000316023	chr7:62008435-62008345	91	ANXA6_BOVIN	7-37	31	1	A:10-37	28
1.4	ENSBTAT00000019719	4	ENSBTAE00000316022	chr7:62007342-62007248	95	ANXA6_BOVIN	37-68	32	1	A:37-68	32
1.5	ENSBTAT00000019719	5	ENSBTAE00000160493	chr7:62006752-62006639	114	ANXA6_BOVIN	69-106	38	1	A:69-106	38
1.6	ENSBTAT00000019719	6	ENSBTAE00000160494	chr7:62005668-62005578	91	ANXA6_BOVIN	107-137	31	1	A:107-137	31
1.7	ENSBTAT00000019719	7	ENSBTAE00000160495	chr7:62004654-62004575	80	ANXA6_BOVIN	137-163	27	1	A:137-163	27
1.8	ENSBTAT00000019719	8	ENSBTAE00000160496	chr7:62003507-62003451	57	ANXA6_BOVIN	164-182	19	1	A:164-182	19
1.9	ENSBTAT00000019719	9	ENSBTAE00000160497	chr7:62002657-62002564	94	ANXA6_BOVIN	183-214	32	1	A:183-214	32
1.10	ENSBTAT00000019719	10	ENSBTAE00000160498	chr7:62002140-62002045	96	ANXA6_BOVIN	214-246	33	1	A:214-246	33
1.11	ENSBTAT00000019719	11	ENSBTAE00000160499	chr7:62000795-62000737	59	ANXA6_BOVIN	246-265	20	1	A:246-265	20
1.12	ENSBTAT00000019719	12	ENSBTAE00000160500	chr7:61999781-61999659	123	ANXA6_BOVIN	266-306	41	1	A:266-306	41
1.13	ENSBTAT00000019719	13	ENSBTAE00000160502	chr7:61998367-61998309	59	ANXA6_BOVIN	307-326	20	1	A:307-323	17
1.14a	ENSBTAT00000019719	14a	ENSBTAE00000160505	chr7:61996987-61996909	79	ANXA6_BOVIN	326-352	27	1	A:330-352	23
1.15	ENSBTAT00000019719	15	ENSBTAE00000409543	chr7:61995219-61995138	82	ANXA6_BOVIN	353-380	28	1	A:353-380	28
1.16	ENSBTAT00000019719	16	ENSBTAE00000391455	chr7:61994550-61994456	95	ANXA6_BOVIN	380-411	32	1	A:380-411	32
1.17	ENSBTAT00000019719	17	ENSBTAE00000406450	chr7:61993980-61993867	114	ANXA6_BOVIN	412-449	38	1	A:412-449	38
1.18	ENSBTAT00000019719	18	ENSBTAE00000428522	chr7:61992420-61992330	91	ANXA6_BOVIN	450-480	31	1	A:450-480	31
1.19	ENSBTAT00000019719	19	ENSBTAE00000429988	chr7:61991549-61991470	80	ANXA6_BOVIN	480-506	27	1	A:480-506	27
1.20	ENSBTAT00000019719	20	ENSBTAE00000390554	chr7:61990680-61990627	54	ANXA6_BOVIN	507-524	18	1	A:507-524	18
1.21	ENSBTAT00000019719	21	ENSBTAE00000385355	chr7:61986093-61986076	18	ANXA6_BOVIN	525-530	6	1	A:525-530	6
1.22	ENSBTAT00000019719	22	ENSBTAE00000407100	chr7:61985197-61985104	94	ANXA6_BOVIN	531-562	32	1	A:545-562	18
1.23b	ENSBTAT00000019719	23b	ENSBTAE00000395039	chr7:61983954-61983859	96	ANXA6_BOVIN	562-594	33	1	A:562-594	33
1.24	ENSBTAT00000019719	24	ENSBTAE00000427065	chr7:61981195-61981137	59	ANXA6_BOVIN	594-613	20	1	A:594-613	20
1.25	ENSBTAT00000019719	25	ENSBTAE00000424151	chr7:61979805-61979683	123	ANXA6_BOVIN	614-654	41	1	A:614-654	41
1.26	ENSBTAT00000019719	26	ENSBTAE00000422323	chr7:61976868-61976448	421	ANXA6_BOVIN	655-673	19	1	A:655-671	17

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:642
 aligned with ANXA6_BOVIN | P79134 from UniProtKB/Swiss-Prot  Length:673

    Alignment length:662
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669  
          ANXA6_BOVIN    10 YRGSIRDFPDFNPSQDAETLYNAMKGFGSDKEAILELITSRSNRQRQEICQNYKSLYGKDLIADLKYELTGKFERLIVGLMRPPAYADAKEIKDAISGIGTDEKCLIEILASRTNEQIHQLVAAYKDAYERDLEADITGDTSGHFRKMLVVLLQGTREEDDVVSEDLVQQDVQDLYEAGELKWGTDEAQFIYILGNRSKQHLRLVFDEYLKTTGKPIEASIRGELSGDFEKLMLAVVKCIRSTAEYFAERLFKAMKGLGTRDNTLIRIMVSRSELDMLDIREIFRTKYEKSLYSMIKNDTSGEYKKTLLKLCGGDDDAAGQFFPEAAQVAYQMWELSAVARVELKGTVRPAGDFNPDADAKALRKAMKGLGTDEDTIIDIIAHRSNAQRQQIRQTFKSHFGRDLMADLKSELSGDLARLILGLMMPPAHYDAKQLKKAMEGAGTDEKALIEILATRTNAEIQAINKAYKEDYHKSLEDALSSDTSGHFKRILISLATGNREEGGEDRERAREDAQVAAEILEIADTTSGDKSSLETRFMMILCTRSYPHLRRVFQEFIKMTNYDVEHTIKKEMSGDVRDVFVAIVQSVKNKPLFFADKLYKSMKGAGTDEKTLTRIMVSRSEIDLLNIRREFIEKYDKSLHQAIEGDTSGHFLKALLAICGG 671
               SCOP domains d1avca1 A:10-350 Annexin VI                                                                                                                                                                                                                                                                                                                          d1avca2 A:351-671 Annexin VI                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains -1avcA01 A:11-90  [code=1.10.220.10, no name defined]                            1avcA02 A:91-168  [code=1.10.220.10, no name defined]                         1avcA03 A:169-251  [code=1.10.220.10, no name defined]                             1avcA04 A:252-323  [code=1.10.220.10, no name defined]                        ---------------------------------1avcA05 A:363-436  [code=1.10.220.10, no name defined]                    1avcA06 A:437-510  [code=1.10.220.10, no name defined]                    1avcA07 A:511-599  [              code=1.10.220.10, no name defined]                     1avcA08 A:600-671  [code=1.10.220.10, no name defined]                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhh.......hhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhh....hhhhhhhhhhhh..........hhhhhhhhhhhhhh........hhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhh......hhhhhhhhhh.....hhhhhhhhhhh....hhhhhhhh..hhhhhhhhhhh..------...hhhhhhhhhhhhhhhh................hhhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhh.......hhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhh..hhhhhhhhhhhh.........hhhhhhhhhhhhhh.--------------.hhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh.....hhhhhhhhhhhh...hhhhhhhh..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------ANNEXIN  PDB: A:37-89 UniProt: 37-89                 -------------------ANNEXIN  PDB: A:109-161 UniProt: 109-161             -------------------------------ANNEXIN  PDB: A:193-245 UniProt: 193-245             ----------------------ANNEXIN  PDB: A:268-320 UniProt: 268-320             -----------------------------------------------------------ANNEXIN  PDB: A:380-432 UniProt: 380-432             -------------------ANNEXIN  PDB: A:452-504 UniProt: 452-504             ---------------------------------------------------------------------------------------------------------------ANNEXIN  PDB: A:616-668 UniProt: 616-668             --- PROSITE
           Transcript 1 (1) Exon 1.3b  PDB: A:10-37     -------------------------------Exon 1.5  PDB: A:69-106               Exon 1.6  PDB: A:107-137       --------------------------Exon 1.8           -------------------------------Exon 1.10  PDB: A:214-246        -------------------Exon 1.12  PDB: A:266-306                Exon 1.13           --------------------------Exon 1.15  PDB: A:353-380   -------------------------------Exon 1.17  PDB: A:412-449             Exon 1.18  PDB: A:450-480      --------------------------Exon 1.20         1.21  Exon 1.22  PDB: A:545-562       -------------------------------Exon 1.24           Exon 1.25  PDB: A:614-654                Exon 1.26         Transcript 1 (1)
           Transcript 1 (2) ---------------------------Exon 1.4  PDB: A:37-68          --------------------------------------------------------------------Exon 1.7  PDB: A:137-163   -------------------Exon 1.9  PDB: A:183-214        -------------------------------Exon 1.11           ------------------------------------------------------------Exon 1.14a  PDB: A:330-352 ---------------------------Exon 1.16  PDB: A:380-411       --------------------------------------------------------------------Exon 1.19  PDB: A:480-506  -------------------------------------------------------Exon 1.23b  PDB: A:562-594       ----------------------------------------------------------------------------- Transcript 1 (2)
                 1avc A  10 YRGSIRDFPDFNPSQDAETLYNAMKGFGSDKEAIINLITSRSNKQRQEICQNYKSLYGKDLIADLKYELTGKFERLIVGLMRPPAYADAKEIKDAISGIGTDEKCLIEILASRTNEQIHQLVAAYKDAYERDLEADITGDTSGHFRKMLVVLLQGTREEDDVVSEDLVQQDVQDLYEAGELKWGTDEAQFIYILGNRSKQHLRLVFDEYLKTTGKPIEASIRGELSGDFEKLMLAVVKCIRSTAEYFAERLFKAMKGLGTRDNTLIRIMVSRSELDMLDIREIFRTKYEKSLYSMIKNDTSGEYKKTLLKLCGG------QFFPEAAQVAYQMWELSAVARVELKGTVRPAGDFNPDADAKALRKAMKGLGTDEDTIIDIITHRSNAQRQQIRQTFKSHFGRDLMADLKSELSGDLARLILGLMMPPAHYDAKQLKKAMEGAGTDEKALIEILATRTNAEIQAINKAYKEDYHKTLEDALSSDTSGHFKRILISLATGNREEGGEDRERAREDAQVAAEIL--------------TRFMMILCTRSYPDLRRVFQEFVKMTNYDVEHTIKKEMSGDVRDVFVAIVQSVKNKPLFFADKLYKSMKGAGTEEKTLTRIMVSRSEIDLLNIRREFIEKYDKSLHQAIEGDTSGHFLKALLAICGG 671
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319   |     -|      339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529|        -     | 549       559       569       579       589       599       609       619       629       639       649       659       669  
                                                                                                                                                                                                                                                                                                                                                   323    330                                                                                                                                                                                                     530            545

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Annexin (61)

Superfamily: Annexin (61)

Family: Annexin (56)

Protein domain: Annexin VI (2)

Cow (Bos taurus) [TaxId: 9913] (2)

1a	d1avca1	A:10-350
1b	d1avca2	A:351-671

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Annexin V; domain 1 (80)

Homologous Superfamily: [code=1.10.220.10, no name defined] (58)

Cattle (Bos taurus) (4)

1a	1avcA02	A:91-168
1b	1avcA04	A:252-323
1c	1avcA08	A:600-671
1d	1avcA06	A:437-510
1e	1avcA03	A:169-251
1f	1avcA07	A:511-599
1g	1avcA05	A:363-436
1h	1avcA01	A:11-90

(no "Pfam Domain" information available for 1AVC)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (ANXA6_BOVIN | P79134)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0051015	actin filament binding	Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits.
	GO:0005262	calcium channel activity	Enables the facilitated diffusion of a calcium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0005544	calcium-dependent phospholipid binding	Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium.
	GO:0048306	calcium-dependent protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium.
	GO:0015485	cholesterol binding	Interacting selectively and non-covalently with cholesterol (cholest-5-en-3-beta-ol); the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
	GO:0035374	chondroitin sulfate binding	Interacting selectively and non-covalently with chondroitin sulfate, a glycosaminoglycan made up of two alternating monosaccharides: D-glucuronic acid (GlcA) and N-acetyl-D-galactosamine (GalNAc).
	GO:0019899	enzyme binding	Interacting selectively and non-covalently with any enzyme.
	GO:0008201	heparin binding	Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0015276	ligand-gated ion channel activity	Enables the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts.
	GO:0008289	lipid binding	Interacting selectively and non-covalently with a lipid.
	GO:0001786	phosphatidylserine binding	Interacting selectively and non-covalently with phosphatidylserine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of L-serine.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0004872	receptor activity	Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
biological process
	GO:0097190	apoptotic signaling pathway	A series of molecular signals which triggers the apoptotic death of a cell. The pathway starts with reception of a signal, and ends when the execution phase of apoptosis is triggered.
	GO:0031214	biomineral tissue development	Formation of hard tissues that consist mainly of inorganic compounds, and also contain a small amounts of organic matrices that are believed to play important roles in their formation.
	GO:0070509	calcium ion import	The directed movement of calcium ions into a cell or organelle.
	GO:0070588	calcium ion transmembrane transport	A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
	GO:0006816	calcium ion transport	The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0003418	growth plate cartilage chondrocyte differentiation	The process in which a chondroblast acquires specialized structural and/or functional features of a chondrocyte that will contribute to the growth of a bone. A chondrocyte is a polymorphic cell that forms cartilage.
	GO:0034220	ion transmembrane transport	A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
	GO:0051560	mitochondrial calcium ion homeostasis	Any process involved in the maintenance of an internal steady state of calcium ions within the cytoplasm of a cell or between mitochondria and their surroundings.
	GO:0051283	negative regulation of sequestering of calcium ion	Any process that stops, prevents, or reduces the frequency, rate or extent of the binding or confining calcium ions such that they are separated from other components of a biological system.
	GO:0051260	protein homooligomerization	The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
	GO:0006937	regulation of muscle contraction	Any process that modulates the frequency, rate or extent of muscle contraction.
cellular component
	GO:0042584	chromaffin granule membrane	The lipid bilayer surrounding a chromaffin granule, a specialized secretory vesicle found in the cells of adrenal glands and various other organs, which is concerned with the synthesis, storage, metabolism, and secretion of epinephrine and norepinephrine.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005925	focal adhesion	Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0031902	late endosome membrane	The lipid bilayer surrounding a late endosome.
	GO:0005765	lysosomal membrane	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
	GO:0042470	melanosome	A tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored. Melanosomes are synthesized in melanocyte cells.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0030061	mitochondrial crista	Any of the inward folds of the mitochondrial inner membrane. Their number, extent, and shape differ in mitochondria from different tissues and organisms. They appear to be devices for increasing the surface area of the mitochondrial inner membrane, where the enzymes of electron transport and oxidative phosphorylation are found. Their shape can vary with the respiratory state of the mitochondria.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0048471	perinuclear region of cytoplasm	Cytoplasm situated near, or occurring around, the nucleus.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
	GO:0001725	stress fiber	A contractile actin filament bundle that consists of short actin filaments with alternating polarity, cross-linked by alpha-actinin and possibly other actin bundling proteins, and with myosin present in a periodic distribution along the fiber.

Asymmetric/Biological Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1avc)

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format \| Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1avc
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	ANXA6_BOVIN \| P79134
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	ANXA6_BOVIN \| P79134
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Entries Sharing at Least One Protein Chain" available for 1AVC)

(no "Related Entries Specified in the PDB File" available for 1AVC)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 7)

Exons (24, 24)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 8)

Pfam Domains (0, 0)

Gene Ontology (42, 42)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File