1AOG - JenaLib

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Title :   TRYPANOSOMA CRUZI TRYPANOTHIONE REDUCTASE (OXIDIZED FORM)

Authors :   C. S. Bond, Y. Zhang, W. N. Hunter

Date :   03 Jul 97 (Deposition) - 17 Sep 97 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym./Biol. Unit : A,B

Keywords :   Trypanothione Reductase, Fad Dependent Disulphide Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Zhang, C. S. Bond, S. Bailey, M. L. Cunningham, A. H. Fairlamb, W. N. Hunter
The Crystal Structure Of Trypanothione Reductase From The Human Pathogen Trypanosoma Cruzi At 2. 3 A Resolution.
Protein Sci. V. 5 52 1996
PubMed-ID: 8771196
(for further references see the PDB file header)

Molecule 1 - TRYPANOTHIONE REDUCTASE
	Chains	:	A, B
	EC Number	:	1.6.4.8
	Organism Scientific	:	TRYPANOSOMA CRUZI
	Organism Taxid	:	5693
	Strain	:	BRAZILIAN SILVIO STRAIN CLONE X10/1

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 4)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	MAE	2	Ligand/Ion	MALEIC ACID

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ILE A:11 , GLY A:12 , GLY A:14 , SER A:15 , GLY A:16 , ASP A:36 , VAL A:37 , SER A:47 , ALA A:48 , GLY A:51 , THR A:52 , CYS A:53 , VAL A:56 , CYS A:58 , LYS A:61 , GLY A:126 , TRP A:127 , GLY A:128 , ALA A:160 , SER A:161 , GLY A:162 , ARG A:288 , ARG A:291 , GLY A:326 , ASP A:327 , MET A:333 , LEU A:334 , THR A:335 , PRO A:336 , HOH A:502 , HOH A:506 , HOH A:513 , HOH A:514 , HOH A:572 , HOH A:659 , HIS B:461 , PRO B:462	BINDING SITE FOR RESIDUE FAD A 492
2	AC2	SOFTWARE	TYR A:222 , ARG A:223 , ILE A:286 , ASN B:169	BINDING SITE FOR RESIDUE MAE A 500
3	AC3	SOFTWARE	ALA A:257 , LYS A:258 , THR A:270 , PHE A:271 , GLU A:272 , HOH A:735 , HIS B:166	BINDING SITE FOR RESIDUE MAE A 501
4	AC4	SOFTWARE	HIS A:461 , HOH A:551 , ILE B:11 , GLY B:12 , GLY B:14 , SER B:15 , GLY B:16 , ASP B:36 , VAL B:37 , SER B:47 , ALA B:48 , GLY B:51 , THR B:52 , CYS B:53 , VAL B:56 , GLY B:57 , CYS B:58 , LYS B:61 , GLY B:126 , TRP B:127 , GLY B:128 , ALA B:160 , SER B:161 , GLY B:162 , PHE B:199 , ARG B:288 , ARG B:291 , GLY B:326 , ASP B:327 , MET B:333 , LEU B:334 , THR B:335 , PRO B:336 , HOH B:500 , HOH B:504 , HOH B:505	BINDING SITE FOR RESIDUE FAD B 492

Asymmetric/Biological Unit

No.	Residues
1	A:53	-	A:58
2	B:53	-	B:58

Asymmetric/Biological Unit

No.	Residues
1	Pro A:43	-	Pro A:44
2	Ile A:369	-	Pro A:370
3	His A:461	-	Pro A:462
4	Pro B:43	-	Pro B:44
5	Ile B:369	-	Pro B:370
6	His B:461	-	Pro B:462

Asymmetric/Biological Unit (5, 10)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_TYTR_TRYCR_001 *	K	95	N	TYTR_TRYCR	---	---	A/B	N	95	N
2	UniProt	VAR_TYTR_TRYCR_002 *	E	140	A	TYTR_TRYCR	---	---	A/B	E	140	A
3	UniProt	VAR_TYTR_TRYCR_003 *	N	156	H	TYTR_TRYCR	---	---	A/B	H	156	H
4	UniProt	VAR_TYTR_TRYCR_004 *	N	353	T	TYTR_TRYCR	---	---	A/B	T	353	T
5	UniProt	VAR_TYTR_TRYCR_005 *	V	441	I	TYTR_TRYCR	---	---	A/B	I	441	I
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PYRIDINE_REDOX_1	PS00076	Pyridine nucleotide-disulphide oxidoreductases class-I active site.	TYTR_TRYCR	50-60	2	A:50-60 B:50-60

(no "Exon" information available for 1AOG)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:485
 aligned with TYTR_TRYCR | P28593 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:485
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482     
           TYTR_TRYCR     3 SKIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEFDRTTLRAEWKKLIAVKDEAVLNINKSYEEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETENILLASGSWPHMPNIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTNPRKTDHTRVASAVFSIPPIGTCGLIEEVASKRYEVVAVYLSSFTPLMHNISGSKYKTFVAKIITNHSDGTVLGVHLLGDNAPEIIQGVGICLKLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYVKGEKMEKP 487
               SCOP domains d1aoga1 A:3-169,A:287-357 Trypanothione reductase                                                                                                                      d1aoga2 A:170-286 Trypanothione reductase                                                                            d1aoga1 A:3-169,A:287-357 Trypanothione reductase                      d1aoga3 A:358-487 Trypanothione reductase                                                                                          SCOP domains
               CATH domains -1aogA01 A:4-165,A:287-360  [code=3.50.50.60, no name defined]                                                                                                     1aogA02 A:166-286  [code=3.50.50.60, no name defined]                                                                    1aogA01 A:4-165,A:287-360  [code=3.50.50.60, no name defined]             1aogA03 A:361-472  [code=3.30.390.30, no name defined]                                                          --------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee...hhhhhhhhhhhh.....eeeee..............hhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.....hhh....hhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.eeeeee..eeeee........eeeeee...eee...eee.......hhh...hhhhhh......eeeee...hhhhhhhhhhhhh.....eeeeee..........hhhhhhhhhhhhhh..eeee...eeeeee.....eeeee....eeee.eeee...eee..hhh.hhh......................eee.hhhh.....hhhhhhhhhhhhhhhh.............eee.....eeeee..hhhhhhh..eeeeeeeeee.hhhhhh.....eeeeeeeee....eeeeeeee...hhhhhhhhhhhhh....hhhhh.........hhhhh......eeee..eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------N--------------------------------------------A---------------H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------I---------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------PYRIDINE_RE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1aog A   3 SKIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTTPRKTDHTRVASAVFSIPPIGTCGLIEEVASKRYEVVAVYLSSFTPLMHKVSGSKYKTFVAKIITNHSDGTVLGVHLLGDNAPEIIQGIGICLKLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYVKGEKMEKP 487
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482

Chain B from PDB  Type:PROTEIN  Length:483
 aligned with TYTR_TRYCR | P28593 from UniProtKB/Swiss-Prot  Length:492

    Alignment length:483
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484   
           TYTR_TRYCR     5 IFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEFDRTTLRAEWKKLIAVKDEAVLNINKSYEEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETENILLASGSWPHMPNIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTNPRKTDHTRVASAVFSIPPIGTCGLIEEVASKRYEVVAVYLSSFTPLMHNISGSKYKTFVAKIITNHSDGTVLGVHLLGDNAPEIIQGVGICLKLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYVKGEKMEKP 487
               SCOP domains d1aogb1 B:5-169,B:287-357 Trypanothione reductase                                                                                                                    d1aogb2 B:170-286 Trypanothione reductase                                                                            d1aogb1 B:5-169,B:287-357 Trypanothione reductase                      d1aogb3 B:358-487 Trypanothione reductase                                                                                          SCOP domains
               CATH domains 1aogB01 B:5-165,B:287-360  [code=3.50.50.60, no name defined]                                                                                                    1aogB02 B:166-286  [code=3.50.50.60, no name defined]                                                                    1aogB01 B:5-165,B:287-360  [code=3.50.50.60, no name defined]             1aogB03 B:361-472  [code=3.30.390.30, no name defined]                                                          --------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...hhhhhhhhhhhhh....eeeee...............hhhhh.hhhhhhhhhhhhhhhhhhhhhhh.....hhh....hhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.eeeeee..eeeee..........eeee...eee...eee.......hhh...hhhhhh......eeeee...hhhhhhhhhhhhh.....eeeeee..........hhhhhhhhhhhhh..eeeee...eeeeee.....eeeee....eeee.eeee...eee..hhh.hhhh.....................eee.hhhh.....hhhhhhhhhhhhhhhh............eeee.....eeeee..hhhhhhh..eeeeeeeeee.hhhhhh.....eeeeeeeee.....eeeeeee...hhhhhhhhhhhhh....hhhhh.........hhhhh......eeee..eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------N--------------------------------------------A---------------H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------------------------------------------------------------------------------------I---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------PYRIDINE_RE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1aog B   5 IFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWEFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNIPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTTPRKTDHTRVASAVFSIPPIGTCGLIEEVASKRYEVVAVYLSSFTPLMHKVSGSKYKTFVAKIITNHSDGTVLGVHLLGDNAPEIIQGIGICLKLNAKISDFYNTIGVHPTSAEELCSMRTPSYYYVKGEKMEKP 487
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Enolase-like; domain 1 (252)

Homologous Superfamily: [code=3.30.390.30, no name defined] (99)

Trypanosoma cruzi. Organism_taxid: 5693. Strain: brazilian silvio strain clone x10/1 (1)

1a	1aogA03	A:361-472
1b	1aogB03	B:361-472

Architecture: 3-Layer(bba) Sandwich (528)

Topology: FAD/NAD(P)-binding domain (373)

Homologous Superfamily: [code=3.50.50.60, no name defined] (373)

Trypanosoma cruzi. Organism_taxid: 5693. Strain: brazilian silvio strain clone x10/1 (1)

2a	1aogB01	B:5-165,B:287-360
2b	1aogA01	A:4-165,A:287-360
2c	1aogA02	A:166-286
2d	1aogB02	B:166-286

(no "Pfam Domain" information available for 1AOG)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (TYTR_TRYCR | P28593)

molecular function
	GO:0015036	disulfide oxidoreductase activity	Catalysis of the reaction: substrate with reduced sulfide groups = substrate with oxidized disulfide bonds.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016668	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces NAD or NADP.
	GO:0015042	trypanothione-disulfide reductase activity	Catalysis of the reaction: NADP+ + trypanothione = NADPH + H+ + trypanothione disulfide.
biological process
	GO:0045454	cell redox homeostasis	Any process that maintains the redox environment of a cell or compartment within a cell.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		His A:461 - Pro A:462	[ RasMol ]
		His B:461 - Pro B:462	[ RasMol ]
		Ile A:369 - Pro A:370	[ RasMol ]
		Ile B:369 - Pro B:370	[ RasMol ]
		Pro A:43 - Pro A:44	[ RasMol ]
		Pro B:43 - Pro B:44	[ RasMol ]

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	1aog
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	TYTR_TRYCR \| P28593	:	1bzl 1gxf 1nda

(no "Related Entries Specified in the PDB File" available for 1AOG)

Description

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Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (4, 4)

SS Bonds (2, 2)

Cis Peptide Bonds (6, 6)

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