PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1AOG
Asym. Unit
Info
Asym.Unit (168 KB)
Biol.Unit 1 (163 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
TRYPANOSOMA CRUZI TRYPANOTHIONE REDUCTASE (OXIDIZED FORM)
Authors
:
C. S. Bond, Y. Zhang, W. N. Hunter
Date
:
03 Jul 97 (Deposition) - 17 Sep 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Trypanothione Reductase, Fad Dependent Disulphide Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zhang, C. S. Bond, S. Bailey, M. L. Cunningham, A. H. Fairlamb, W. N. Hunter
The Crystal Structure Of Trypanothione Reductase From The Human Pathogen Trypanosoma Cruzi At 2. 3 A Resolution.
Protein Sci. V. 5 52 1996
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: MALEIC ACID (MAEa)
2b: MALEIC ACID (MAEb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
MAE
2
Ligand/Ion
MALEIC ACID
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:11 , GLY A:12 , GLY A:14 , SER A:15 , GLY A:16 , ASP A:36 , VAL A:37 , SER A:47 , ALA A:48 , GLY A:51 , THR A:52 , CYS A:53 , VAL A:56 , CYS A:58 , LYS A:61 , GLY A:126 , TRP A:127 , GLY A:128 , ALA A:160 , SER A:161 , GLY A:162 , ARG A:288 , ARG A:291 , GLY A:326 , ASP A:327 , MET A:333 , LEU A:334 , THR A:335 , PRO A:336 , HOH A:502 , HOH A:506 , HOH A:513 , HOH A:514 , HOH A:572 , HOH A:659 , HIS B:461 , PRO B:462
BINDING SITE FOR RESIDUE FAD A 492
2
AC2
SOFTWARE
TYR A:222 , ARG A:223 , ILE A:286 , ASN B:169
BINDING SITE FOR RESIDUE MAE A 500
3
AC3
SOFTWARE
ALA A:257 , LYS A:258 , THR A:270 , PHE A:271 , GLU A:272 , HOH A:735 , HIS B:166
BINDING SITE FOR RESIDUE MAE A 501
4
AC4
SOFTWARE
HIS A:461 , HOH A:551 , ILE B:11 , GLY B:12 , GLY B:14 , SER B:15 , GLY B:16 , ASP B:36 , VAL B:37 , SER B:47 , ALA B:48 , GLY B:51 , THR B:52 , CYS B:53 , VAL B:56 , GLY B:57 , CYS B:58 , LYS B:61 , GLY B:126 , TRP B:127 , GLY B:128 , ALA B:160 , SER B:161 , GLY B:162 , PHE B:199 , ARG B:288 , ARG B:291 , GLY B:326 , ASP B:327 , MET B:333 , LEU B:334 , THR B:335 , PRO B:336 , HOH B:500 , HOH B:504 , HOH B:505
BINDING SITE FOR RESIDUE FAD B 492
[
close Site info
]
SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_TYTR_TRYCR_001 (N95N, chain A/B, )
2: VAR_TYTR_TRYCR_002 (E140A, chain A/B, )
3: VAR_TYTR_TRYCR_003 (H156H, chain A/B, )
4: VAR_TYTR_TRYCR_004 (T353T, chain A/B, )
5: VAR_TYTR_TRYCR_005 (I441I, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TYTR_TRYCR_001
*
K
95
N
TYTR_TRYCR
---
---
A/B
N
95
N
2
UniProt
VAR_TYTR_TRYCR_002
*
E
140
A
TYTR_TRYCR
---
---
A/B
E
140
A
3
UniProt
VAR_TYTR_TRYCR_003
*
N
156
H
TYTR_TRYCR
---
---
A/B
H
156
H
4
UniProt
VAR_TYTR_TRYCR_004
*
N
353
T
TYTR_TRYCR
---
---
A/B
T
353
T
5
UniProt
VAR_TYTR_TRYCR_005
*
V
441
I
TYTR_TRYCR
---
---
A/B
I
441
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PYRIDINE_REDOX_1 (A:50-60,B:50-60)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRIDINE_REDOX_1
PS00076
Pyridine nucleotide-disulphide oxidoreductases class-I active site.
TYTR_TRYCR
50-60
2
A:50-60
B:50-60
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1aoga3 (A:358-487)
1b: SCOP_d1aogb3 (B:358-487)
2a: SCOP_d1aoga1 (A:3-169,A:287-357)
2b: SCOP_d1aoga2 (A:170-286)
2c: SCOP_d1aogb1 (B:5-169,B:287-357)
2d: SCOP_d1aogb2 (B:170-286)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CO dehydrogenase flavoprotein C-domain-like
(111)
Superfamily
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Family
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Protein domain
:
Trypanothione reductase
(10)
Trypanosoma cruzi [TaxId: 5693]
(4)
1a
d1aoga3
A:358-487
1b
d1aogb3
B:358-487
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD/NAD-linked reductases, N-terminal and central domains
(92)
Protein domain
:
Trypanothione reductase
(10)
Trypanosoma cruzi [TaxId: 5693]
(4)
2a
d1aoga1
A:3-169,A:287-357
2b
d1aoga2
A:170-286
2c
d1aogb1
B:5-169,B:287-357
2d
d1aogb2
B:170-286
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1aogA03 (A:361-472)
1b: CATH_1aogB03 (B:361-472)
2a: CATH_1aogB01 (B:5-165,B:287-360)
2b: CATH_1aogA01 (A:4-165,A:287-360)
2c: CATH_1aogA02 (A:166-286)
2d: CATH_1aogB02 (B:166-286)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.30, no name defined]
(99)
Trypanosoma cruzi. Organism_taxid: 5693. Strain: brazilian silvio strain clone x10/1
(1)
1a
1aogA03
A:361-472
1b
1aogB03
B:361-472
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Trypanosoma cruzi. Organism_taxid: 5693. Strain: brazilian silvio strain clone x10/1
(1)
2a
1aogB01
B:5-165,B:287-360
2b
1aogA01
A:4-165,A:287-360
2c
1aogA02
A:166-286
2d
1aogB02
B:166-286
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (168 KB)
Header - Asym.Unit
Biol.Unit 1 (163 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1AOG
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
