Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  XYLOSE ISOMERASE FROM BACILLUS STEAROTHERMOPHILUS
 
Authors :  O. Gallay, R. Chopra, E. Conti, P. Brick, D. Blow
Date :  28 Nov 97  (Deposition) - 03 Jun 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Ketolisomerase, Xylose Metabolism, Glucose-Fructose Interconversion, Hydride Transfer, Alpha-Beta Barrel, Metalloenzyme, Thermophile (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Gallay, R. Chopra, E. Conti, P. Brick, R. Jackson, B. Hartley, C. Vieille, J. G. Zeikus, D. Blow
Crystal Structures Of Class Ii Xylose Isomerases From Two Thermophiles And A Hyperthermophile
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - XYLOSE ISOMERASE
    Cellular Location: CYTOPLASM
    Chains: A, B, C, D
    EC Number: 5.3.1.5
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422
    Strain: LLD-R
    Synonym: GLUCOSE ISOMERASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1MN8Ligand/IonMANGANESE (II) ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:229 , GLU A:265 , ASP A:293 , ASP A:336 , HOH A:538BINDING SITE FOR RESIDUE MN A 491
02AC2SOFTWAREGLU A:265 , HIS A:268 , ASP A:304 , ASP A:306 , HOH A:493 , HOH A:544BINDING SITE FOR RESIDUE MN A 492
03AC3SOFTWAREGLU B:229 , GLU B:265 , ASP B:293 , ASP B:336 , HOH B:542BINDING SITE FOR RESIDUE MN B 491
04AC4SOFTWAREGLU B:265 , HIS B:268 , ASP B:304 , ASP B:306 , HOH B:496 , HOH B:548BINDING SITE FOR RESIDUE MN B 492
05AC5SOFTWAREGLU C:229 , GLU C:265 , ASP C:293 , ASP C:336 , HOH C:541BINDING SITE FOR RESIDUE MN C 491
06AC6SOFTWAREGLU C:265 , HIS C:268 , ASP C:304 , ASP C:306 , HOH C:497 , HOH C:547BINDING SITE FOR RESIDUE MN C 492
07AC7SOFTWAREGLU D:229 , GLU D:265 , ASP D:293 , ASP D:336 , HOH D:544BINDING SITE FOR RESIDUE MN D 491
08AC8SOFTWAREGLU D:265 , HIS D:268 , ASP D:304 , ASP D:306 , HOH D:499 , HOH D:550BINDING SITE FOR RESIDUE MN D 492
09MN1UNKNOWNGLU A:229 , GLU A:265 , ASP A:293 , ASP A:336 , HOH A:538MN BINDING SITE 1 OF MOLECULE A
10MN2UNKNOWNGLU A:265 , ASP A:304 , ASP A:306 , HOH A:493 , HOH A:545MN BINDING SITE 2 OF MOLECULE A
11MN3UNKNOWNGLU B:229 , GLU B:265 , ASP B:293 , ASP B:336 , HOH B:542MN BINDING SITE 1 OF MOLECULE B
12MN4UNKNOWNGLU B:265 , ASP B:304 , ASP B:306 , HOH B:496 , HOH B:549MN BINDING SITE 2 OF MOLECULE B
13MN5UNKNOWNGLU C:229 , GLU C:265 , ASP C:293 , ASP C:336 , HOH C:541MN BINDING SITE 1 OF MOLECULE C
14MN6UNKNOWNGLU C:265 , ASP C:304 , ASP C:306 , HOH C:497 , HOH C:548MN BINDING SITE 2 OF MOLECULE C
15MN7UNKNOWNGLU D:229 , GLU D:265 , ASP D:293 , ASP D:336 , HOH D:544MN BINDING SITE 1 OF MOLECULE D
16MN8UNKNOWNGLU D:265 , ASP D:304 , ASP D:306 , HOH D:499 , HOH D:551MN BINDING SITE 2 OF MOLECULE D

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:437 -D:437
2B:437 -C:437

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Glu A:234 -Pro A:235
2Glu B:234 -Pro B:235
3Glu C:234 -Pro C:235
4Glu D:234 -Pro D:235

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1A0D)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1XYLOSE_ISOMERASEPS51415 Xylose isomerase family profile.XYLA_GEOSE34-434
 
 
 		  4A:33-433
B:33-433
C:33-433
D:33-433

(-) Exons   (0, 0)

(no "Exon" information available for 1A0D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:437
 aligned with XYLA_GEOSE | P54273 from UniProtKB/Swiss-Prot  Length:441

    Alignment length:437
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       
           XYLA_GEOSE     2 PYFDNISTIAYEGPASKNPLAFKFYNPEEKVGDKTMEEHLRFSVAYWHTFTGDGSDPFGAGNMIRPWNKYSGMDLAKARVEAAFEFFEKLNIPFFCFHDVDIAPEGETLKETYKNLDIIVDMIEEYMKTSKTKLLWNTANLFTHPRFVHGAATSCNADVFAYAAAKVKKGLEIAKRLGAENYVFWGGREGYETLLNTDMKLELDNLARFLHMAVDYAKEIGFDGQFLIEPKPKEPTKHQYDFDVATALAFLQTYGLKDYFKFNIEANHATLAGHTFEHELRVARIHGMLGSVDANQGDMLLGWDTDEFPTDLYSTTLAMYEILKNGGLGRGGLNFDAKVRRGSFEPEDLFYAHIAGMDSFAVGLKVAHRLIEDRVFDEFIEERYKSYTEGIGREIVEGTADFHKLEAHALQLGEIQNQSGRQERLKTLLNQYLLEVC 438
               SCOP domains d1a0da_ A: D-xylose isomerase                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1a0dA00 A:1-437 Divalent-metal-dependent TIM barrel enzymes                                                                                                                                                                                                                                                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................................hhhhh.eeeehhhhhh..............hhhh..hhhhhhhhhhhhhhhhhhh...eeeeehhhh......hhhhhhhhhhhhhhhhhhhhh...eeeeee......hhh.........hhhhhhhhhhhhhhhhhhhhh...eeee.........hhh..hhhhhhhhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhh...hhheeeeeehhhhhh....hhhhhhhhhhh..eeeee..................hhhhhhhhhhhhh........eee..........hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhh.hhhhhhhh....hhhhhhhhhh..........hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------XYLOSE_ISOMERASE  PDB: A:33-433 UniProt: 34-434                                                                                                                                                                                                                                                                                                                                                                  ---- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1a0d A   1 PYFDNISTIAYEGPASKNPLAFKFYNPEEKVGDKTMEEHLRFSVAYWHTFTGDGSDPFGAGNMIRPWNKYSGMDLAKARVEAAFEFFEKLNIPFFCFHDVDIAPEGETLKETYKNLDIIVDMIEEYMKTSKTKLLWNTANLFTHPRFVHGAATSCNADVFAYAAAKVKKGLEIAKRLGAENYVFWGGREGYETLLNTDMKLELDNLARFLHMAVDYAKEIGFDGQFLIEPKPKEPTKHQYDFDVATALAFLQTYGLKDYFKFNIEANHATLAGHTFEHELRVARIHGMLGSVDANQGDMLLGWDTDEFPTDLYSTTLAMYEILKNGGLGRGGLNFDAKVRRGSFEPEDLFYAHIAGMDSFAVGLKVAHRLIEDRVFDEFIEERYKSYTEGIGREIVEGTADFHKLEAHALQLGEIQNQSGRQERLKTLLNQYLLEVC 437
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       


Chain B from PDB  Type:PROTEIN  Length:437
 aligned with XYLA_GEOSE | P54273 from UniProtKB/Swiss-Prot  Length:441

    Alignment length:437
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       
           XYLA_GEOSE     2 PYFDNISTIAYEGPASKNPLAFKFYNPEEKVGDKTMEEHLRFSVAYWHTFTGDGSDPFGAGNMIRPWNKYSGMDLAKARVEAAFEFFEKLNIPFFCFHDVDIAPEGETLKETYKNLDIIVDMIEEYMKTSKTKLLWNTANLFTHPRFVHGAATSCNADVFAYAAAKVKKGLEIAKRLGAENYVFWGGREGYETLLNTDMKLELDNLARFLHMAVDYAKEIGFDGQFLIEPKPKEPTKHQYDFDVATALAFLQTYGLKDYFKFNIEANHATLAGHTFEHELRVARIHGMLGSVDANQGDMLLGWDTDEFPTDLYSTTLAMYEILKNGGLGRGGLNFDAKVRRGSFEPEDLFYAHIAGMDSFAVGLKVAHRLIEDRVFDEFIEERYKSYTEGIGREIVEGTADFHKLEAHALQLGEIQNQSGRQERLKTLLNQYLLEVC 438
               SCOP domains d1a0db_ B: D-xylose isomerase                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1a0dB00 B:1-437 Divalent-metal-dependent TIM barrel enzymes                                                                                                                                                                                                                                                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................................hhhhh.eeeehhhhhh..............hhhh..hhhhhhhhhhhhhhhhhhh...eeeeehhhh......hhhhhhhhhhhhhhhhhhhhh...eeeeee......hhh.........hhhhhhhhhhhhhhhhhhhhh...eeee.........hhh..hhhhhhhhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhh...hhheeeeeehhhhhh....hhhhhhhhhhh..eeeee..................hhhhhhhhhhhhh........eee..........hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhh.hhhhhhhh....hhhhhhhhhh..........hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------XYLOSE_ISOMERASE  PDB: B:33-433 UniProt: 34-434                                                                                                                                                                                                                                                                                                                                                                  ---- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1a0d B   1 PYFDNISTIAYEGPASKNPLAFKFYNPEEKVGDKTMEEHLRFSVAYWHTFTGDGSDPFGAGNMIRPWNKYSGMDLAKARVEAAFEFFEKLNIPFFCFHDVDIAPEGETLKETYKNLDIIVDMIEEYMKTSKTKLLWNTANLFTHPRFVHGAATSCNADVFAYAAAKVKKGLEIAKRLGAENYVFWGGREGYETLLNTDMKLELDNLARFLHMAVDYAKEIGFDGQFLIEPKPKEPTKHQYDFDVATALAFLQTYGLKDYFKFNIEANHATLAGHTFEHELRVARIHGMLGSVDANQGDMLLGWDTDEFPTDLYSTTLAMYEILKNGGLGRGGLNFDAKVRRGSFEPEDLFYAHIAGMDSFAVGLKVAHRLIEDRVFDEFIEERYKSYTEGIGREIVEGTADFHKLEAHALQLGEIQNQSGRQERLKTLLNQYLLEVC 437
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       


Chain C from PDB  Type:PROTEIN  Length:437
 aligned with XYLA_GEOSE | P54273 from UniProtKB/Swiss-Prot  Length:441

    Alignment length:437
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       
           XYLA_GEOSE     2 PYFDNISTIAYEGPASKNPLAFKFYNPEEKVGDKTMEEHLRFSVAYWHTFTGDGSDPFGAGNMIRPWNKYSGMDLAKARVEAAFEFFEKLNIPFFCFHDVDIAPEGETLKETYKNLDIIVDMIEEYMKTSKTKLLWNTANLFTHPRFVHGAATSCNADVFAYAAAKVKKGLEIAKRLGAENYVFWGGREGYETLLNTDMKLELDNLARFLHMAVDYAKEIGFDGQFLIEPKPKEPTKHQYDFDVATALAFLQTYGLKDYFKFNIEANHATLAGHTFEHELRVARIHGMLGSVDANQGDMLLGWDTDEFPTDLYSTTLAMYEILKNGGLGRGGLNFDAKVRRGSFEPEDLFYAHIAGMDSFAVGLKVAHRLIEDRVFDEFIEERYKSYTEGIGREIVEGTADFHKLEAHALQLGEIQNQSGRQERLKTLLNQYLLEVC 438
               SCOP domains d1a0dc_ C: D-xylose isomerase                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1a0dC00 C:1-437 Divalent-metal-dependent TIM barrel enzymes                                                                                                                                                                                                                                                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................................hhhhh.eeeehhhhhh..............hhhh..hhhhhhhhhhhhhhhhhhh...eeeeehhhh......hhhhhhhhhhhhhhhhhhhhh...eeeeee......hhh.........hhhhhhhhhhhhhhhhhhhhh...eeee.........hhh..hhhhhhhhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhh...hhheeeeeehhhhhh....hhhhhhhhhhh..eeeee..................hhhhhhhhhhhhh........eee..........hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhh.hhhhhhhh....hhhhhhhhhh..........hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------XYLOSE_ISOMERASE  PDB: C:33-433 UniProt: 34-434                                                                                                                                                                                                                                                                                                                                                                  ---- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1a0d C   1 PYFDNISTIAYEGPASKNPLAFKFYNPEEKVGDKTMEEHLRFSVAYWHTFTGDGSDPFGAGNMIRPWNKYSGMDLAKARVEAAFEFFEKLNIPFFCFHDVDIAPEGETLKETYKNLDIIVDMIEEYMKTSKTKLLWNTANLFTHPRFVHGAATSCNADVFAYAAAKVKKGLEIAKRLGAENYVFWGGREGYETLLNTDMKLELDNLARFLHMAVDYAKEIGFDGQFLIEPKPKEPTKHQYDFDVATALAFLQTYGLKDYFKFNIEANHATLAGHTFEHELRVARIHGMLGSVDANQGDMLLGWDTDEFPTDLYSTTLAMYEILKNGGLGRGGLNFDAKVRRGSFEPEDLFYAHIAGMDSFAVGLKVAHRLIEDRVFDEFIEERYKSYTEGIGREIVEGTADFHKLEAHALQLGEIQNQSGRQERLKTLLNQYLLEVC 437
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       


Chain D from PDB  Type:PROTEIN  Length:437
 aligned with XYLA_GEOSE | P54273 from UniProtKB/Swiss-Prot  Length:441

    Alignment length:437
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       
           XYLA_GEOSE     2 PYFDNISTIAYEGPASKNPLAFKFYNPEEKVGDKTMEEHLRFSVAYWHTFTGDGSDPFGAGNMIRPWNKYSGMDLAKARVEAAFEFFEKLNIPFFCFHDVDIAPEGETLKETYKNLDIIVDMIEEYMKTSKTKLLWNTANLFTHPRFVHGAATSCNADVFAYAAAKVKKGLEIAKRLGAENYVFWGGREGYETLLNTDMKLELDNLARFLHMAVDYAKEIGFDGQFLIEPKPKEPTKHQYDFDVATALAFLQTYGLKDYFKFNIEANHATLAGHTFEHELRVARIHGMLGSVDANQGDMLLGWDTDEFPTDLYSTTLAMYEILKNGGLGRGGLNFDAKVRRGSFEPEDLFYAHIAGMDSFAVGLKVAHRLIEDRVFDEFIEERYKSYTEGIGREIVEGTADFHKLEAHALQLGEIQNQSGRQERLKTLLNQYLLEVC 438
               SCOP domains d1a0dd_ D: D-xylose isomerase                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1a0dD00 D:1-437 Divalent-metal-dependent TIM barrel enzymes                                                                                                                                                                                                                                                                                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................................hhhhh.eeeehhhhhh..............hhhh..hhhhhhhhhhhhhhhhhhh...eeeeehhhh......hhhhhhhhhhhhhhhhhhhhh...eeeeee......hhh.........hhhhhhhhhhhhhhhhhhhhh...eeee.........hhh..hhhhhhhhhhhhhhhhhhhhh.....eeee...............hhhhhhhhhh...hhheeeeeehhhhhh....hhhhhhhhhhh..eeeee..................hhhhhhhhhhhhh........eee..........hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhh.hhhhhhhh....hhhhhhhhhh..........hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------XYLOSE_ISOMERASE  PDB: D:33-433 UniProt: 34-434                                                                                                                                                                                                                                                                                                                                                                  ---- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1a0d D   1 PYFDNISTIAYEGPASKNPLAFKFYNPEEKVGDKTMEEHLRFSVAYWHTFTGDGSDPFGAGNMIRPWNKYSGMDLAKARVEAAFEFFEKLNIPFFCFHDVDIAPEGETLKETYKNLDIIVDMIEEYMKTSKTKLLWNTANLFTHPRFVHGAATSCNADVFAYAAAKVKKGLEIAKRLGAENYVFWGGREGYETLLNTDMKLELDNLARFLHMAVDYAKEIGFDGQFLIEPKPKEPTKHQYDFDVATALAFLQTYGLKDYFKFNIEANHATLAGHTFEHELRVARIHGMLGSVDANQGDMLLGWDTDEFPTDLYSTTLAMYEILKNGGLGRGGLNFDAKVRRGSFEPEDLFYAHIAGMDSFAVGLKVAHRLIEDRVFDEFIEERYKSYTEGIGREIVEGTADFHKLEAHALQLGEIQNQSGRQERLKTLLNQYLLEVC 437
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1A0D)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (XYLA_GEOSE | P54273)
molecular function
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0009045    xylose isomerase activity    Catalysis of the reaction: D-xylose = D-xylulose.
biological process
    GO:0042732    D-xylose metabolic process    The chemical reactions and pathways involving D-xylose, a naturally occurring plant polysaccharide.
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0006098    pentose-phosphate shunt    The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    MN1  [ RasMol ]  +environment [ RasMol ]
    MN2  [ RasMol ]  +environment [ RasMol ]
    MN3  [ RasMol ]  +environment [ RasMol ]
    MN4  [ RasMol ]  +environment [ RasMol ]
    MN5  [ RasMol ]  +environment [ RasMol ]
    MN6  [ RasMol ]  +environment [ RasMol ]
    MN7  [ RasMol ]  +environment [ RasMol ]
    MN8  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu A:234 - Pro A:235   [ RasMol ]  
    Glu B:234 - Pro B:235   [ RasMol ]  
    Glu C:234 - Pro C:235   [ RasMol ]  
    Glu D:234 - Pro D:235   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1a0d
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  XYLA_GEOSE | P54273
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  5.3.1.5
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  XYLA_GEOSE | P54273
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1A0D)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1A0D)