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(-) Description

Title :  CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION VC0802 FROM VIBRIO CHOLERAE, POSSIBLE TRANSPORT PROTEIN
 
Authors :  R. Zhang, R. Wu, S. Moy, F. Collart, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  02 Jun 05  (Deposition) - 19 Jul 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Vibrio Cholerae, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, R. Wu, S. Moy, F. Collart, A. Joachimiak
The Crystal Structure Of A Hypothetical Protein Vc0802 From Vibrio Cholerae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN VC0802
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PDM68
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 666
    Strain: N16961

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1ZVP)

(-) Sites  (0, 0)

(no "Site" information available for 1ZVP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZVP)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1His A:78 -Ser A:79

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZVP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1ZVP)

(-) Exons   (0, 0)

(no "Exon" information available for 1ZVP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:128
 aligned with Q9KTT6_VIBCH | Q9KTT6 from UniProtKB/TrEMBL  Length:132

    Alignment length:130
                                    11        21        31        41        51        61        71        81        91       101       111       121       131
         Q9KTT6_VIBCH     2 SGIKSLELLLQSMSPELMAGDYVFCTVNGALSDYLSLEPIATFREPEGLTLVLEAEKAQQAGLESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANVIAGYYHDHIFVQKEKAQQALQALGEFAQ 131
               SCOP domains d1zvpa1 A:2-67 Hypothetical protein VC0802                        d1zvpa2 A:68  -131 Hypothetical protein VC0802                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh.eeee....eeeeee..hhhhhhhhh..eeeee..eeeeeeehhhhhhh.......eeeeeee...--...hhhhhhhhhhhhh....eeee....eeeeee..hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zvp A   2 SGIKSLELLLQSMSPELMAGDYVFCTVNGALSDYLSLEPIATFREPEGLTLVLEAEKAQQAGLESSALFSLITLTVHS--EAVGLTAAFATKLAEHGISANVIAGYYHDHIFVQKEKAQQALQALGEFAQ 131
                                    11        21        31        41        51        61        71       | -|       91       101       111       121       131
                                                                                                        79 82                                                 


Chain B from PDB  Type:PROTEIN  Length:128
 aligned with Q9KTT6_VIBCH | Q9KTT6 from UniProtKB/TrEMBL  Length:132

    Alignment length:130
                                    11        21        31        41        51        61        71        81        91       101       111       121       131
         Q9KTT6_VIBCH     2 SGIKSLELLLQSMSPELMAGDYVFCTVNGALSDYLSLEPIATFREPEGLTLVLEAEKAQQAGLESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANVIAGYYHDHIFVQKEKAQQALQALGEFAQ 131
               SCOP domains d1zvpb1 B:2-67 Hypothetical protein VC0802                        d1zvpb2 B:6  8-131 Hypothetical protein VC0802                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh..eeee....eeeeee..hhhhhhhhh..eeeee..eeeeeeehhhhhhh.......eeeeeee..--....hhhhhhhhhhhhh....eeee....eeeeee..hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zvp B   2 SGIKSLELLLQSMSPELMAGDYVFCTVNGALSDYLSLEPIATFREPEGLTLVLEAEKAQQAGLESSALFSLITLTVH--LEAVGLTAAFATKLAEHGISANVIAGYYHDHIFVQKEKAQQALQALGEFAQ 131
                                    11        21        31        41        51        61        71      | 81        91       101       111       121       131
                                                                                                       78 81                                                  


Chain C from PDB  Type:PROTEIN  Length:128
 aligned with Q9KTT6_VIBCH | Q9KTT6 from UniProtKB/TrEMBL  Length:132

    Alignment length:130
                             1                                                                                                                                
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129
         Q9KTT6_VIBCH     - -MSGIKSLELLLQSMSPELMAGDYVFCTVNGALSDYLSLEPIATFREPEGLTLVLEAEKAQQAGLESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANVIAGYYHDHIFVQKEKAQQALQALGEF 129
               SCOP domains d1zvpc1 C:0-67 Hypothetical protein VC0802                          d1zvpc2 C:  68-129 Hypothetical protein VC0802                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh....eee....eeeeee..hhhhhhhhh..eeeee..eeeeeeehhhhhh........eeeeee..--.....hhhhhhhhhhhh....eeeee....eeeeee..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zvp C   0 GMSGIKSLELLLQSMSPELMAGDYVFCTVNGALSDYLSLEPIATFREPEGLTLVLEAEKAQQAGLESSALFSLITLTV--SLEAVGLTAAFATKLAEHGISANVIAGYYHDHIFVQKEKAQQALQALGEF 129
                                     9        19        29        39        49        59        69       | -|       89        99       109       119       129
                                                                                                        77 80                                                 


Chain D from PDB  Type:PROTEIN  Length:131
 aligned with Q9KTT6_VIBCH | Q9KTT6 from UniProtKB/TrEMBL  Length:132

    Alignment length:131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 
         Q9KTT6_VIBCH     1 MSGIKSLELLLQSMSPELMAGDYVFCTVNGALSDYLSLEPIATFREPEGLTLVLEAEKAQQAGLESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANVIAGYYHDHIFVQKEKAQQALQALGEFAQ 131
               SCOP domains d1zvpd1 D:1-67 Hypothetical protein VC0802                         d1zvpd2 D:68-131 Hypothetical protein VC0802                     SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ACT_3-1zvpD01 D:1-72                                                    ----------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ACT_3-1zvpD02 D:1-72                                                    ----------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ACT_3-1zvpD03 D:1-72                                                    ----------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ACT_3-1zvpD04 D:1-72                                                    ----------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) -------------------------------------------------------------------ACT_7-1zvpD05 D:68-128                                       --- Pfam domains (5)
           Pfam domains (6) -------------------------------------------------------------------ACT_7-1zvpD06 D:68-128                                       --- Pfam domains (6)
           Pfam domains (7) -------------------------------------------------------------------ACT_7-1zvpD07 D:68-128                                       --- Pfam domains (7)
           Pfam domains (8) -------------------------------------------------------------------ACT_7-1zvpD08 D:68-128                                       --- Pfam domains (8)
         Sec.struct. author hhhhhhhhhhh....eee....eeeeee..hhhhhhhhh..eeeee..eeeeeeehhhhhh........eeeeee.........hhhhhhhhhhhh.....eeee....eeeeee..hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zvp D   1 MSGIKSLELLLQSMSPELMAGDYVFCTVNGALSDYLSLEPIATFREPEGLTLVLEAEKAQQAGLESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANVIAGYYHDHIFVQKEKAQQALQALGEFAQ 131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZVP)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: ACT (34)
(-)
Family: ACT_3 (1)
(-)
Family: ACT_7 (2)
(-)
Vibrio cholerae (1)
2aACT_7-1zvpD05D:68-128
2bACT_7-1zvpD06D:68-128
2cACT_7-1zvpD07D:68-128
2dACT_7-1zvpD08D:68-128

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q9KTT6_VIBCH | Q9KTT6)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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