1ZSV - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN NADP-DEPENDENT LEUKOTRIENE B4 12-HYDROXYDEHYDROGENASE

Authors :   A. P. Turnbull, C. Johansson, P. Savitsky, K. Guo, A. Edwards, C. Arrowsmith, M. Sundstrom, F. Von Delft, U. Oppermann, Structural Genomics Consortium (Sgc)

Date :   25 May 05 (Deposition) - 21 Jun 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: A,B,C,D  (1x)

Keywords :   Medium-Chain Dehydrogenase/Reductase Family , Leukotriene B4, Human, Structural Genomics, Structural Genomics Consortium, Sgc, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. P. Turnbull, C. Johansson, P. Savitsky, K. Guo, A. Edwards, C. Arrowsmith, M. Sundstrom, F. Von Delft, U. Oppermann
Crystal Structure Of Human Nadp-Dependent Leukotriene B4 12-Hydroxydehydrogenase
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - NADP-DEPENDENT LEUKOTRIENE B4 12- HYDROXYDEHYDROGENASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC-BSA4
	Expression System Strain	:	BL21(DE3)-R3
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	LTB4DH
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 22)

No.	Name	Count	Type	Full Name
1	CL	22	Ligand/Ion	CHLORIDE ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ALA D:149 , TYR D:193	BINDING SITE FOR RESIDUE CL D 401
02	AC2	SOFTWARE	TYR B:193	BINDING SITE FOR RESIDUE CL B 402
03	AC3	SOFTWARE	THR A:18 , SER A:20 , ASN D:19	BINDING SITE FOR RESIDUE CL D 403
04	AC4	SOFTWARE	ASN B:19 , ALA B:311 , SER C:20	BINDING SITE FOR RESIDUE CL C 404
05	AC5	SOFTWARE	VAL C:46 , MET C:316 , LYS C:324 , THR C:325 , HOH C:451	BINDING SITE FOR RESIDUE CL C 405
06	AC6	SOFTWARE	TYR C:193	BINDING SITE FOR RESIDUE CL C 406
07	AC7	SOFTWARE	TYR A:193	BINDING SITE FOR RESIDUE CL A 407
08	AC8	SOFTWARE	MET A:316 , LYS A:324 , THR A:325 , HOH A:447	BINDING SITE FOR RESIDUE CL A 408
09	AC9	SOFTWARE	VAL B:46 , LYS B:324 , THR B:325	BINDING SITE FOR RESIDUE CL B 409
10	BC1	SOFTWARE	LYS D:324 , THR D:325	BINDING SITE FOR RESIDUE CL D 414

(no "SS Bond" information available for 1ZSV)

(no "Cis Peptide Bond" information available for 1ZSV)

Asymmetric Unit (1, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_023111	A	27	S	PTGR1_HUMAN	Polymorphism	1053959	A/B/C/D	S	27	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_023111	A	27	S	PTGR1_HUMAN	Polymorphism	1053959	A/B	S	27	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_023111	A	27	S	PTGR1_HUMAN	Polymorphism	1053959	C/D	S	27	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_023111	A	27	S	PTGR1_HUMAN	Polymorphism	1053959	A/B/C/D	S	27	S

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 1ZSV)

Asymmetric Unit (9, 36)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.2	ENST00000309195	2	ENSE00001308320	chr9:114361687-114361619	69	PTGR1_HUMAN	-	0	0	-	-
1.3a	ENST00000309195	3a	ENSE00002197904	chr9:114359712-114359597	116	PTGR1_HUMAN	1-36	36	4	A:2-36 B:2-36 C:2-36 D:2-36	35 35 35 35
1.4	ENST00000309195	4	ENSE00001721223	chr9:114356547-114356502	46	PTGR1_HUMAN	36-51	16	4	A:36-51 B:36-51 C:36-51 D:36-51	16 16 16 16
1.5a	ENST00000309195	5a	ENSE00001612603	chr9:114355262-114355206	57	PTGR1_HUMAN	51-70	20	4	A:51-70 B:51-70 C:51-70 D:51-70	20 20 20 20
1.7	ENST00000309195	7	ENSE00001738356	chr9:114348445-114348278	168	PTGR1_HUMAN	70-126	57	4	A:70-126 B:70-126 C:70-126 D:70-126	57 57 57 57
1.8b	ENST00000309195	8b	ENSE00002186116	chr9:114345869-114345752	118	PTGR1_HUMAN	126-165	40	4	A:126-165 B:126-165 C:126-165 D:126-165	40 40 40 40
1.9a	ENST00000309195	9a	ENSE00001680849	chr9:114341231-114341076	156	PTGR1_HUMAN	166-217	52	4	A:166-217 B:166-217 C:166-217 D:166-217	52 52 52 52
1.10	ENST00000309195	10	ENSE00001738629	chr9:114337122-114337014	109	PTGR1_HUMAN	218-254	37	4	A:218-254 B:218-254 C:218-254 D:218-254	37 37 37 37
1.11	ENST00000309195	11	ENSE00001706834	chr9:114332489-114332371	119	PTGR1_HUMAN	254-293	40	4	A:254-293 B:254-293 C:254-293 D:254-293	40 40 40 40
1.12e	ENST00000309195	12e	ENSE00001891446	chr9:114325511-114325247	265	PTGR1_HUMAN	294-329	36	4	A:294-329 B:294-329 C:294-329 D:294-329	36 36 36 36

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:328
 aligned with PTGR1_HUMAN | Q14914 from UniProtKB/Swiss-Prot  Length:329

    Alignment length:328
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321        
          PTGR1_HUMAN     2 VRTKTWTLKKHFVGYPTNSDFELKTAELPPLKNGEVLLEALFLTVDPYMRVAAKRLKEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIVKA 329
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1zsvA01 A:2-120,A:299-329 Medium-chain alcohol dehydrogenases, catalytic domain                                        1zsvA02 A:121-298 NAD(P)-binding Rossmann-like Domain                                                                                                                             1zsvA01 A:2-120,A:299-329       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee........hhh.eeeeeee........eeeeeeeee..hhhhhhhhhh.........eeeeeeee.........eeee......eeee.....ee.........hhhhhhh..hhhhhhhhhhhhhh.......eeee......hhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeee.....hhhhhhhhhh...eeeeee..hhhhhhhhhh.eeeeeeeee..hhhhh..........hhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3a  PDB: A:2-36 [INCOMPLETE]--------------Exon 1.5a           -------------------------------------------------------Exon 1.8b  PDB: A:126-165               Exon 1.9a  PDB: A:166-217 UniProt: 166-217          Exon 1.10  PDB: A:218-254            ---------------------------------------Exon 1.12e  PDB: A:294-329           Transcript 1 (1)
           Transcript 1 (2) ----------------------------------Exon 1.4        ------------------Exon 1.7  PDB: A:70-126 UniProt: 70-126                  -------------------------------------------------------------------------------------------------------------------------------Exon 1.11  PDB: A:254-293               ------------------------------------ Transcript 1 (2)
                 1zsv A   2 SMTKTWTLKKHFVGYPTNSDFELKTSELPPLKNGEVLLEALFLTVDPYMRVAAKRLKEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIVKA 329
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321

Chain B from PDB  Type:PROTEIN  Length:328
 aligned with PTGR1_HUMAN | Q14914 from UniProtKB/Swiss-Prot  Length:329

    Alignment length:328
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321        
          PTGR1_HUMAN     2 VRTKTWTLKKHFVGYPTNSDFELKTAELPPLKNGEVLLEALFLTVDPYMRVAAKRLKEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIVKA 329
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1zsvB01 B:2-120,B:299-329 Medium-chain alcohol dehydrogenases, catalytic domain                                        1zsvB02 B:121-298 NAD(P)-binding Rossmann-like Domain                                                                                                                             1zsvB01 B:2-120,B:299-329       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee........hhh.eeeeeee........eeeeeeeee..hhhhhhhhhh.........eeeeeeee.........eeee......eeee.....ee.........hhhhhhh..hhhhhhhhhhhhh........eeee......hhhhhhhhhhhh..eeeeee.hhhhhhhhhhh...eeee.....hhhhhhhhhh...eeeeee..hhhhhhhhhh.eeeeeeeee..hhhhh..........hhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3a  PDB: B:2-36 [INCOMPLETE]--------------Exon 1.5a           -------------------------------------------------------Exon 1.8b  PDB: B:126-165               Exon 1.9a  PDB: B:166-217 UniProt: 166-217          Exon 1.10  PDB: B:218-254            ---------------------------------------Exon 1.12e  PDB: B:294-329           Transcript 1 (1)
           Transcript 1 (2) ----------------------------------Exon 1.4        ------------------Exon 1.7  PDB: B:70-126 UniProt: 70-126                  -------------------------------------------------------------------------------------------------------------------------------Exon 1.11  PDB: B:254-293               ------------------------------------ Transcript 1 (2)
                 1zsv B   2 SMTKTWTLKKHFVGYPTNSDFELKTSELPPLKNGEVLLEALFLTVDPYMRVAAKRLKEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIVKA 329
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321

Chain C from PDB  Type:PROTEIN  Length:328
 aligned with PTGR1_HUMAN | Q14914 from UniProtKB/Swiss-Prot  Length:329

    Alignment length:328
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321        
          PTGR1_HUMAN     2 VRTKTWTLKKHFVGYPTNSDFELKTAELPPLKNGEVLLEALFLTVDPYMRVAAKRLKEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIVKA 329
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1zsvC01 C:2-120,C:299-329 Medium-chain alcohol dehydrogenases, catalytic domain                                        1zsvC02 C:121-298 NAD(P)-binding Rossmann-like Domain                                                                                                                             1zsvC01 C:2-120,C:299-329       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee........hhh.eeeeeee........eeeeeeeee..hhhhhhhhhh.........eeeeeeee.........eeee......eeee.....ee.........hhhhhhh..hhhhhhhhhhhhh........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh...eeee.....hhhhhhhhhh...eeeeee..hhhhhhhhhh.eeeeeeeee..hhhhh..........hhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhh....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3a  PDB: C:2-36 [INCOMPLETE]--------------Exon 1.5a           -------------------------------------------------------Exon 1.8b  PDB: C:126-165               Exon 1.9a  PDB: C:166-217 UniProt: 166-217          Exon 1.10  PDB: C:218-254            ---------------------------------------Exon 1.12e  PDB: C:294-329           Transcript 1 (1)
           Transcript 1 (2) ----------------------------------Exon 1.4        ------------------Exon 1.7  PDB: C:70-126 UniProt: 70-126                  -------------------------------------------------------------------------------------------------------------------------------Exon 1.11  PDB: C:254-293               ------------------------------------ Transcript 1 (2)
                 1zsv C   2 SMTKTWTLKKHFVGYPTNSDFELKTSELPPLKNGEVLLEALFLTVDPYMRVAAKRLKEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIVKA 329
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321

Chain D from PDB  Type:PROTEIN  Length:328
 aligned with PTGR1_HUMAN | Q14914 from UniProtKB/Swiss-Prot  Length:329

    Alignment length:328
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321        
          PTGR1_HUMAN     2 VRTKTWTLKKHFVGYPTNSDFELKTAELPPLKNGEVLLEALFLTVDPYMRVAAKRLKEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIVKA 329
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1zsvD01 D:2-120,D:299-329 Medium-chain alcohol dehydrogenases, catalytic domain                                        1zsvD02 D:121-298 NAD(P)-binding Rossmann-like Domain                                                                                                                             1zsvD01 D:2-120,D:299-329       CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------------------------------------------------------ADH_zinc_N-1zsvD01 D:153-290                                                                                                              --------------------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------------------------------------------------------ADH_zinc_N-1zsvD02 D:153-290                                                                                                              --------------------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------------------------------------------------------------------------------------------------------ADH_zinc_N-1zsvD03 D:153-290                                                                                                              --------------------------------------- Pfam domains (3)
           Pfam domains (4) -------------------------------------------------------------------------------------------------------------------------------------------------------ADH_zinc_N-1zsvD04 D:153-290                                                                                                              --------------------------------------- Pfam domains (4)
         Sec.struct. author .eeeeeee........hhh.eeeeeee........eeeeeeeee..hhhhhhhhhh.........eeeeeeee.........eeee......eeee.....ee.........hhhhhhh..hhhhhhhhhhhhh........eeee......hhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeee.....hhhhhhhhhh...eeeeee..hhhhhhhhhh.eeeeeeeee.................hhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3a  PDB: D:2-36 [INCOMPLETE]--------------Exon 1.5a           -------------------------------------------------------Exon 1.8b  PDB: D:126-165               Exon 1.9a  PDB: D:166-217 UniProt: 166-217          Exon 1.10  PDB: D:218-254            ---------------------------------------Exon 1.12e  PDB: D:294-329           Transcript 1 (1)
           Transcript 1 (2) ----------------------------------Exon 1.4        ------------------Exon 1.7  PDB: D:70-126 UniProt: 70-126                  -------------------------------------------------------------------------------------------------------------------------------Exon 1.11  PDB: D:254-293               ------------------------------------ Transcript 1 (2)
                 1zsv D   2 SMTKTWTLKKHFVGYPTNSDFELKTSELPPLKNGEVLLEALFLTVDPYMRVAAKRLKEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYIIEGFENMPAAFMGMLKGDNLGKTIVKA 329
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 1ZSV)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Human (Homo sapiens) (188)

1a	1zsvA02	A:121-298
1b	1zsvB02	B:121-298
1c	1zsvC02	C:121-298
1d	1zsvD02	D:121-298

Architecture: Alpha-Beta Complex (3881)

Topology: Quinone Oxidoreductase; Chain A, domain 1 (131)

Homologous Superfamily: Medium-chain alcohol dehydrogenases, catalytic domain (131)

Human (Homo sapiens) (30)

2a	1zsvA01	A:2-120,A:299-329
2b	1zsvB01	B:2-120,B:299-329
2c	1zsvC01	C:2-120,C:299-329
2d	1zsvD01	D:2-120,D:299-329

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: ADH_zinc_N (75)

Homo sapiens (Human) (24)

1a	ADH_zinc_N-1zsvD01	D:153-290
1b	ADH_zinc_N-1zsvD02	D:153-290
1c	ADH_zinc_N-1zsvD03	D:153-290
1d	ADH_zinc_N-1zsvD04	D:153-290

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (PTGR1_HUMAN | Q14914)

molecular function
	GO:0036132	13-prostaglandin reductase activity	Catalysis of the reaction: 15-keto-prostaglandin + NAD(P)H + H+ -> 13,14-dihydro-15-keto-prostaglandin + NAD(P)+. This reaction is the reduction of 15-keto-prostaglandin.
	GO:0047522	15-oxoprostaglandin 13-oxidase activity	Catalysis of the reaction: (5Z)-(15S)-11-alpha-hydroxy-9,15-dioxoprostanoate + NAD(P)+ -> (5Z)-(15S)-11-alpha-hydroxy-9,15-dioxoprosta-13-enoate + NAD(P)H + H+.
	GO:0032440	2-alkenal reductase [NAD(P)] activity	Catalysis of the reaction: n-alkanal + NAD(P)+ = alk-2-enal + NAD(P)H + H+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0006691	leukotriene metabolic process	The chemical reactions and pathways involving leukotriene, a pharmacologically active substance derived from a polyunsaturated fatty acid, such as arachidonic acid.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006693	prostaglandin metabolic process	The chemical reactions and pathways involving prostaglandins, any of a group of biologically active metabolites which contain a cyclopentane ring due to the formation of a bond between two carbons of a fatty acid. They have a wide range of biological activities.
	GO:0009636	response to toxic substance	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

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	1zsv
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	PTGR1_HUMAN \| Q14914
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	PTGR1_HUMAN \| Q14914	:	2y05

(no "Related Entries Specified in the PDB File" available for 1ZSV)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 22)

Sites (10, 10)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 4)

PROSITE Motifs (0, 0)

Exons (9, 36)

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Related Entries Specified in the PDB File