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1ZSV
Asym. Unit
Info
Asym.Unit (211 KB)
Biol.Unit 1 (104 KB)
Biol.Unit 2 (105 KB)
Biol.Unit 3 (205 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN NADP-DEPENDENT LEUKOTRIENE B4 12-HYDROXYDEHYDROGENASE
Authors
:
A. P. Turnbull, C. Johansson, P. Savitsky, K. Guo, A. Edwards, C. Arrowsmith, M. Sundstrom, F. Von Delft, U. Oppermann, Structural Genomics Consortium (Sgc)
Date
:
25 May 05 (Deposition) - 21 Jun 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Medium-Chain Dehydrogenase/Reductase Family , Leukotriene B4, Human, Structural Genomics, Structural Genomics Consortium, Sgc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. P. Turnbull, C. Johansson, P. Savitsky, K. Guo, A. Edwards, C. Arrowsmith, M. Sundstrom, F. Von Delft, U. Oppermann
Crystal Structure Of Human Nadp-Dependent Leukotriene B4 12-Hydroxydehydrogenase
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 22)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
1u: CHLORIDE ION (CLu)
1v: CHLORIDE ION (CLv)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
22
Ligand/Ion
CHLORIDE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA D:149 , TYR D:193
BINDING SITE FOR RESIDUE CL D 401
02
AC2
SOFTWARE
TYR B:193
BINDING SITE FOR RESIDUE CL B 402
03
AC3
SOFTWARE
THR A:18 , SER A:20 , ASN D:19
BINDING SITE FOR RESIDUE CL D 403
04
AC4
SOFTWARE
ASN B:19 , ALA B:311 , SER C:20
BINDING SITE FOR RESIDUE CL C 404
05
AC5
SOFTWARE
VAL C:46 , MET C:316 , LYS C:324 , THR C:325 , HOH C:451
BINDING SITE FOR RESIDUE CL C 405
06
AC6
SOFTWARE
TYR C:193
BINDING SITE FOR RESIDUE CL C 406
07
AC7
SOFTWARE
TYR A:193
BINDING SITE FOR RESIDUE CL A 407
08
AC8
SOFTWARE
MET A:316 , LYS A:324 , THR A:325 , HOH A:447
BINDING SITE FOR RESIDUE CL A 408
09
AC9
SOFTWARE
VAL B:46 , LYS B:324 , THR B:325
BINDING SITE FOR RESIDUE CL B 409
10
BC1
SOFTWARE
LYS D:324 , THR D:325
BINDING SITE FOR RESIDUE CL D 414
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_023111 (S27S, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_023111
A
27
S
PTGR1_HUMAN
Polymorphism
1053959
A/B/C/D
S
27
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(9, 36)
Info
All Exons
Exon 1.3a (A:2-36 | B:2-36 | C:2-36 | D:2-36)
Exon 1.4 (A:36-51 | B:36-51 | C:36-51 | D:36...)
Exon 1.5a (A:51-70 | B:51-70 | C:51-70 | D:51...)
Exon 1.7 (A:70-126 | B:70-126 | C:70-126 | D...)
Exon 1.8b (A:126-165 | B:126-165 | C:126-165 ...)
Exon 1.9a (A:166-217 | B:166-217 | C:166-217 ...)
Exon 1.10 (A:218-254 | B:218-254 | C:218-254 ...)
Exon 1.11 (A:254-293 | B:254-293 | C:254-293 ...)
Exon 1.12e (A:294-329 | B:294-329 | C:294-329 ...)
View:
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All Exon Boundaries
01: Boundary 1.2/1.3a
02: Boundary 1.3a/1.4
03: Boundary 1.4/1.5a
04: Boundary 1.5a/1.7
05: Boundary 1.7/1.8b
06: Boundary 1.8b/1.9a
07: Boundary 1.9a/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.12e
10: Boundary 1.12e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000309195
2
ENSE00001308320
chr9:
114361687-114361619
69
PTGR1_HUMAN
-
0
0
-
-
1.3a
ENST00000309195
3a
ENSE00002197904
chr9:
114359712-114359597
116
PTGR1_HUMAN
1-36
36
4
A:2-36
B:2-36
C:2-36
D:2-36
35
35
35
35
1.4
ENST00000309195
4
ENSE00001721223
chr9:
114356547-114356502
46
PTGR1_HUMAN
36-51
16
4
A:36-51
B:36-51
C:36-51
D:36-51
16
16
16
16
1.5a
ENST00000309195
5a
ENSE00001612603
chr9:
114355262-114355206
57
PTGR1_HUMAN
51-70
20
4
A:51-70
B:51-70
C:51-70
D:51-70
20
20
20
20
1.7
ENST00000309195
7
ENSE00001738356
chr9:
114348445-114348278
168
PTGR1_HUMAN
70-126
57
4
A:70-126
B:70-126
C:70-126
D:70-126
57
57
57
57
1.8b
ENST00000309195
8b
ENSE00002186116
chr9:
114345869-114345752
118
PTGR1_HUMAN
126-165
40
4
A:126-165
B:126-165
C:126-165
D:126-165
40
40
40
40
1.9a
ENST00000309195
9a
ENSE00001680849
chr9:
114341231-114341076
156
PTGR1_HUMAN
166-217
52
4
A:166-217
B:166-217
C:166-217
D:166-217
52
52
52
52
1.10
ENST00000309195
10
ENSE00001738629
chr9:
114337122-114337014
109
PTGR1_HUMAN
218-254
37
4
A:218-254
B:218-254
C:218-254
D:218-254
37
37
37
37
1.11
ENST00000309195
11
ENSE00001706834
chr9:
114332489-114332371
119
PTGR1_HUMAN
254-293
40
4
A:254-293
B:254-293
C:254-293
D:254-293
40
40
40
40
1.12e
ENST00000309195
12e
ENSE00001891446
chr9:
114325511-114325247
265
PTGR1_HUMAN
294-329
36
4
A:294-329
B:294-329
C:294-329
D:294-329
36
36
36
36
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1zsvA02 (A:121-298)
1b: CATH_1zsvB02 (B:121-298)
1c: CATH_1zsvC02 (C:121-298)
1d: CATH_1zsvD02 (D:121-298)
2a: CATH_1zsvA01 (A:2-120,A:299-329)
2b: CATH_1zsvB01 (B:2-120,B:299-329)
2c: CATH_1zsvC01 (C:2-120,C:299-329)
2d: CATH_1zsvD01 (D:2-120,D:299-329)
View:
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Classes
(
)
(
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)
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)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1zsvA02
A:121-298
1b
1zsvB02
B:121-298
1c
1zsvC02
C:121-298
1d
1zsvD02
D:121-298
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Human (Homo sapiens)
(30)
2a
1zsvA01
A:2-120,A:299-329
2b
1zsvB01
B:2-120,B:299-329
2c
1zsvC01
C:2-120,C:299-329
2d
1zsvD01
D:2-120,D:299-329
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_ADH_zinc_N_1zsvD01 (D:153-290)
1b: PFAM_ADH_zinc_N_1zsvD02 (D:153-290)
1c: PFAM_ADH_zinc_N_1zsvD03 (D:153-290)
1d: PFAM_ADH_zinc_N_1zsvD04 (D:153-290)
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Clans
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(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
ADH_zinc_N
(75)
Homo sapiens (Human)
(24)
1a
ADH_zinc_N-1zsvD01
D:153-290
1b
ADH_zinc_N-1zsvD02
D:153-290
1c
ADH_zinc_N-1zsvD03
D:153-290
1d
ADH_zinc_N-1zsvD04
D:153-290
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