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Title :   ACT DOMAIN PROTEIN FROM STREPTOCOCCUS PNEUMONIAE

Authors :   J. Osipiuk, C. Hatzos, J. Abdullah, F. Collart, A. Joachimiak, Midwest For Structural Genomics (Mcsg)

Date :   17 May 05 (Deposition) - 28 Jun 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: A,C  (1x)
Biol. Unit 3: B  (2x)

Keywords :   Act Domain, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Osipiuk, C. Hatzos, J. Abdullah, F. Collart, A. Joachimiak
X-Ray Crystal Structure Of Act Domain Protein From Streptococcus Pneumoniae
To Be Published
PubMed: search

Molecule 1 - ACT DOMAIN PROTEIN
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	SP0238
	Organism Scientific	:	STREPTOCOCCUS PNEUMONIAE
	Organism Taxid	:	170187
	Strain	:	TIGR4

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:	A		C
Biological Unit 3 (2x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 11)

No.	Name	Count	Type	Full Name
1	K	1	Ligand/Ion	POTASSIUM ION
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 10)

No.	Name	Count	Type	Full Name
1	K	-1	Ligand/Ion	POTASSIUM ION
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 7)

No.	Name	Count	Type	Full Name
1	K	-1	Ligand/Ion	POTASSIUM ION
2	MSE	7	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (1, 6)

No.	Name	Count	Type	Full Name
1	K	-1	Ligand/Ion	POTASSIUM ION
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 1ZPV)

(no "SS Bond" information available for 1ZPV)

(no "Cis Peptide Bond" information available for 1ZPV)

(no "SAP(SNP)/Variant" information available for 1ZPV)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ACT	PS51671	ACT domain profile.	Y238_STRPN	4-77	3	A:4-77 B:4-77 C:4-77

Biological Unit 1 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ACT	PS51671	ACT domain profile.	Y238_STRPN	4-77	3	A:4-77 B:4-77 C:4-77

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ACT	PS51671	ACT domain profile.	Y238_STRPN	4-77	2	A:4-77 - C:4-77

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ACT	PS51671	ACT domain profile.	Y238_STRPN	4-77	2	- B:4-77 -

(no "Exon" information available for 1ZPV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:85
 aligned with Y238_STRPN | P67382 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:85
                              1                                                                                  
                              |      8        18        28        38        48        58        68        78     
            Y238_STRPN    - --MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNVKINIQSAAIFE 83
               SCOP domains --d1zpva1 A:1-83 UPF0237 protein SP0238                                               SCOP domains
               CATH domains 1zpvA00 A:-2-83  [code=3.30.70.260, no name defined]                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee....hhhhhhhhhhhhh..eeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhhhh..eeeeee.hhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----ACT  PDB: A:4-77 UniProt: 4-77                                            ------ PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                  1zpv A -2 NAmKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTmmAVVSSDEKQDFTYLRNEFEAFGQTLNVKINIQSAAIFE 83
                             ||      8        18        28        38     || 48        58        68        78     
                             ||                                         44-MSE                                   
                            -1|                                          45-MSE                                  
                              1-MSE

Chain B from PDB  Type:PROTEIN  Length:84
 aligned with Y238_STRPN | P67382 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:84
                             1                                                                                  
                             |       9        19        29        39        49        59        69        79    
            Y238_STRPN    - -MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNVKINIQSAAIFE 83
               SCOP domains d1zpvb_ B: UPF0237 protein SP0238                                                    SCOP domains
               CATH domains 1zpvB00 B:-1-83  [code=3.30.70.260, no name defined]                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee....hhhhhhhhhhhhh..eeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhhhh..eeeeee.hhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----ACT  PDB: B:4-77 UniProt: 4-77                                            ------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                  1zpv B -1 AmKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTmmAVVSSDEKQDFTYLRNEFEAFGQTLNVKINIQSAAIFE 83
                            ||       9        19        29        39    ||  49        59        69        79    
                           -1|                                         44-MSE                                   
                             1-MSE                                      45-MSE

Chain C from PDB  Type:PROTEIN  Length:88
 aligned with Y238_STRPN | P67382 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:88
                              1                                                                                        
                              |      8        18        28        38        48        58        68        78        
            Y238_STRPN    - --MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNVKINIQSAAIFEAMY 86
               SCOP domains d1zpvc_ C: UPF0237 protein SP0238                                                        SCOP domains
               CATH domains 1zpvC00 C:-2-86  [code=3.30.70.260, no name defined]                                     CATH domains
           Pfam domains (1) ---ACT_6-1zpvC01 C:2-77                                                        --------- Pfam domains (1)
           Pfam domains (2) ---ACT_6-1zpvC02 C:2-77                                                        --------- Pfam domains (2)
           Pfam domains (3) ---ACT_6-1zpvC03 C:2-77                                                        --------- Pfam domains (3)
         Sec.struct. author ..eeeeeeeee....hhhhhhhhhhhhh..eeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhhhh..eeeeee.hhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----ACT  PDB: C:4-77 UniProt: 4-77                                            --------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  1zpv C -2 NAmKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTmmAVVSSDEKQDFTYLRNEFEAFGQTLNVKINIQSAAIFEAmY 86
                             ||      8        18        28        38     || 48        58        68        78      | 
                            -1|                                         44-MSE                                   85-MSE
                              1-MSE                                      45-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Ferredoxin-like (1795)

Superfamily: ACT-like (63)

Family: SP0238-like (1)

Protein domain: UPF0237 protein SP0238 (1)

Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313] (1)

1a	d1zpva1	A:1-83
1b	d1zpvb_	B:
1c	d1zpvc_	C:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Alpha-Beta Plaits (1688)

Homologous Superfamily: [code=3.30.70.260, no name defined] (34)

Streptococcus pneumoniae tigr4. Organism_taxid: 170187. Strain: tigr4. (1)

1a	1zpvB00	B:-1-83
1b	1zpvA00	A:-2-83
1c	1zpvC00	C:-2-86

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: ACT (34)

Family: ACT_6 (3)

Streptococcus pneumoniae (1)

1a	ACT_6-1zpvC01	C:2-77
1b	ACT_6-1zpvC02	C:2-77
1c	ACT_6-1zpvC03	C:2-77

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (Y238_STRPN | P67382)

molecular function
	GO:0016597	amino acid binding	Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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