1ZLE - JenaLib

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Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF A RGD-CONTAINING HOST-SELECTIVE TOXIN: PYRENOPHORA TRITICI-REPENTIS PTR TOXA

Authors :   G. N. Sarma, V. A. Manning, L. M. Ciuffetti, P. A. Karplus

Date :   06 May 05 (Deposition) - 16 Aug 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Beta-Sandwich; Rgd-Motif, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. N. Sarma, V. A. Manning, L. M. Ciuffetti, P. A. Karplus
Structure Of Ptr Toxa: An Rgd-Containing Host-Selective Toxin From Pyrenophora Tritici-Repentis
Plant Cell V. 17 3190 2005
PubMed-ID: 16214901 | Reference-DOI: 10.1105/TPC.105.034918
(for further references see the PDB file header)

Molecule 1 - PTR NECROSIS TOXIN
	Chains	:	A, B, C
	Fragment	:	C-TERMINAL DOMAIN
	Organism Scientific	:	PYRENOPHORA TRITICI-REPENTIS
	Organism Taxid	:	45151
	Synonym	:	PTR TOXA

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 11)

No.	Name	Count	Type	Full Name
1	NI	8	Ligand/Ion	NICKEL (II) ION
2	PCA	3	Mod. Amino Acid	PYROGLUTAMIC ACID

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	NI	-1	Ligand/Ion	NICKEL (II) ION
2	PCA	1	Mod. Amino Acid	PYROGLUTAMIC ACID

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	NI	-1	Ligand/Ion	NICKEL (II) ION
2	PCA	1	Mod. Amino Acid	PYROGLUTAMIC ACID

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	NI	-1	Ligand/Ion	NICKEL (II) ION
2	PCA	1	Mod. Amino Acid	PYROGLUTAMIC ACID

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP B:83 , HOH B:1019	BINDING SITE FOR RESIDUE NI B 1001
2	AC2	SOFTWARE	ASP C:83	BINDING SITE FOR RESIDUE NI C 1002
3	AC3	SOFTWARE	ASP A:83 , ASP A:85 , ASN A:171 , ARG A:173	BINDING SITE FOR RESIDUE NI A 1003
4	AC4	SOFTWARE	GLU B:99	BINDING SITE FOR RESIDUE NI B 1004
5	AC5	SOFTWARE	HOH A:1027 , HOH A:1050 , ASP B:149 , HOH C:1034	BINDING SITE FOR RESIDUE NI B 1006
6	AC6	SOFTWARE	ASP B:135	BINDING SITE FOR RESIDUE NI B 1007
7	AC7	SOFTWARE	ASN A:101 , LEU A:176 , ASN A:178	BINDING SITE FOR RESIDUE NI A 1008

(no "SS Bond" information available for 1ZLE)

(no "Cis Peptide Bond" information available for 1ZLE)

(no "SAP(SNP)/Variant" information available for 1ZLE)

(no "PROSITE Motif" information available for 1ZLE)

(no "Exon" information available for 1ZLE)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:103
 aligned with P78737_9PLEO | P78737 from UniProtKB/TrEMBL  Length:178

    Alignment length:118
                                    70        80        90       100       110       120       130       140       150       160       170        
         P78737_9PLEO    61 QGSCMSITINPSRPSVNNIGQVDIDSVILGRPGAIGSWELNNFITIGLNRVNADTVRVNIRNTGRTNRLIITQWDNTVTRGDVYELFGDYALIQGRGSFCLNIRSDTGRENWRMQLEN 178
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....---------------..eehhhhhh.....eeeee....eeeeeee....eeeeeeee....eeeeeeeeeee...eeeeeeeeeeee..eeeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 1zle A  61 xGSC---------------GQVDIDSVILGRPGAIGSWELNNFITIGLNRVNADTVRVNIRNTGRTNRLIITQWDNTVTRGDVYELFGDYALIQGRGSFCLNIRSDTGRENWRMQLEN 178
                            |  |     -        80        90       100       110       120       130       140       150       160       170        
                            | 64              80                                                                                                  
                           61-PCA

Chain B from PDB  Type:PROTEIN  Length:109
 aligned with P78737_9PLEO | P78737 from UniProtKB/TrEMBL  Length:178

    Alignment length:118
                                    70        80        90       100       110       120       130       140       150       160       170        
         P78737_9PLEO    61 QGSCMSITINPSRPSVNNIGQVDIDSVILGRPGAIGSWELNNFITIGLNRVNADTVRVNIRNTGRTNRLIITQWDNTVTRGDVYELFGDYALIQGRGSFCLNIRSDTGRENWRMQLEN 178
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....---------.ee.....eehhhhhh.....eeeee....eeeeeee....eeeeeeee....eeeeeeeeeee...eeeeeeeeeeee..eeeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 1zle B  61 xGSC---------PSVNNIGQVDIDSVILGRPGAIGSWELNNFITIGLNRVNADTVRVNIRNTGRTNRLIITQWDNTVTRGDVYELFGDYALIQGRGSFCLNIRSDTGRENWRMQLEN 178
                            |  |     -   |    80        90       100       110       120       130       140       150       160       170        
                           61-PCA       74

Chain C from PDB  Type:PROTEIN  Length:103
 aligned with P78737_9PLEO | P78737 from UniProtKB/TrEMBL  Length:178

    Alignment length:118
                                    70        80        90       100       110       120       130       140       150       160       170        
         P78737_9PLEO    61 QGSCMSITINPSRPSVNNIGQVDIDSVILGRPGAIGSWELNNFITIGLNRVNADTVRVNIRNTGRTNRLIITQWDNTVTRGDVYELFGDYALIQGRGSFCLNIRSDTGRENWRMQLEN 178
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Tox               in_ToxA-1zleC01 C:62-178                                                                            Pfam domains (1)
           Pfam domains (2) -Tox               in_ToxA-1zleC02 C:62-178                                                                            Pfam domains (2)
           Pfam domains (3) -Tox               in_ToxA-1zleC03 C:62-178                                                                            Pfam domains (3)
         Sec.struct. author ....---------------..eehhhhhh.....eeeee....eeeeeee....eeeeeeee....eeeeeeeeeee...eeeeeeeeeeee..eeeeeeee.........eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 1zle C  61 xGSC---------------GQVDIDSVILGRPGAIGSWELNNFITIGLNRVNADTVRVNIRNTGRTNRLIITQWDNTVTRGDVYELFGDYALIQGRGSFCLNIRSDTGRENWRMQLEN 178
                            |  |     -        80        90       100       110       120       130       140       150       160       170        
                           61-PCA             80

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 1ZLE)

(no "CATH Domain" information available for 1ZLE)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Toxin_ToxA] (2)

Family: Toxin_ToxA (2)

Pyrenophora tritici-repentis (2)

1a	Toxin_ToxA-1zleC01	C:62-178
1b	Toxin_ToxA-1zleC02	C:62-178
1c	Toxin_ToxA-1zleC03	C:62-178

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1ZLE)

Asymmetric Unit
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	P78737_9PLEO \| P78737	:	1zld

1zld	SAME PROTEIN IN A DIFFERENT CRYSTAL FORM

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 11)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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