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(-) Description

Title :  SOLUTION STRUCTURE OF CFAFP-501
 
Authors :  C. Li, C. Jin
Date :  08 Mar 05  (Deposition) - 11 Oct 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Antifreeze Protein, Choristoneura Fumiferana, Spruce Budworm, Solution Structure (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Li, X. Guo, Z. Jia, B. Xia, C. Jin
Solution Structure Of An Antifreeze Protein Cfafp-501 From Choristoneura Fumiferana
J. Biomol. Nmr V. 32 251 2005
PubMed-ID: 16132825  |  Reference-DOI: 10.1007/S10858-005-8206-3
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ANTIFREEZE PROTEIN ISOFORM 501
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: SPRUCE BUDWORM
    Organism Scientific: CHORISTONEURA FUMIFERANA
    Organism Taxid: 7141

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1Z2F)

(-) Sites  (0, 0)

(no "Site" information available for 1Z2F)

(-) SS Bonds  (5, 5)

NMR Structure
No.Residues
1A:4 -A:17
2A:25 -A:38
3A:56 -A:68
4A:93 -A:116
5A:98 -A:111

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Gly A:90 -Pro A:91

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1Z2F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1Z2F)

(-) Exons   (0, 0)

(no "Exon" information available for 1Z2F)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:121
 aligned with Q9GSA6_CHOFU | Q9GSA6 from UniProtKB/TrEMBL  Length:138

    Alignment length:121
                                    27        37        47        57        67        77        87        97       107       117       127       137 
         Q9GSA6_CHOFU    18 DGTCVNTNSQITANSQCVKSTATNCYIDNSQLVDTSICTRSQYSDANVKKSVTTDCNIDKSQVYLTTCTGSQYNGIYIRSSTTTGTSISGPGCSISTCTITRGVATPAAACKISGCSLSAM 138
               SCOP domains d1z2fa_ A: automated matches                                                                                              SCOP domains
               CATH domains 1z2fA00 A:1-121  [code=2.160.10.20, no name defined]                                                                      CATH domains
               Pfam domains CfAFP-1z2fA01 A:1-121                                                                                                     Pfam domains
         Sec.struct. author ...eee...ee....eee.eeee..eee..eee...eee..eee..eee..eee..eee..eee..eee..eeeeeeee..eee.eeeeeeeeeee..eee..ee......eee..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z2f A   1 DGTCVNTNSQITANSQCVKSTATNCYIDNSQLVDTSICTRSQYSDANVKKSVTTDCNIDKSQVYLTTCTGSQYNGIYIRSSTTTGTSISGPGCSISTCTITRGVATPAAACKISGCSLSAM 121
                                    10        20        30        40        50        60        70        80        90       100       110       120
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: CfAFP] (4)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 1Z2F)

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  Cis Peptide Bonds
    Gly A:90 - Pro A:91   [ RasMol ]  
 

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 Related Entries

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        Q9GSA6_CHOFU | Q9GSA6: 1m8n

(-) Related Entries Specified in the PDB File

6111 1H, 13C, 15N ASSINGMENTS OF CFAFP501