1M8N - JenaLib

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Biological Unit 4 (Jmol Viewer)

Title :   CHORISTONEURA FUMIFERANA (SPRUCE BUDWORM) ANTIFREEZE PROTEIN ISOFORM 501

Authors :   E. K. Leinala, P. L. Davies, Z. Jia

Date :   25 Jul 02 (Deposition) - 18 Sep 02 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.45

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Left-Handed Beta-Helix, Antifreeze Protein, (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. K. Leinala, P. L. Davies, D. Doucet, M. G. Tyshenko, Vk Walker, Z. Jia
A Beta-Helical Antifreeze Protein Isoform With Increased Activity: Structural And Functional Insights
J. Biol. Chem. V. 277 33349 2002
PubMed-ID: 12105229 | Reference-DOI: 10.1074/JBC.M205575200
(for further references see the PDB file header)

Molecule 1 - ANTIFREEZE PROTEIN ISOFORM 501
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Common	:	SPRUCE BUDWORM
	Organism Scientific	:	CHORISTONEURA FUMIFERANA
	Organism Taxid	:	7141

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1M8N)

(no "Site" information available for 1M8N)

Asymmetric Unit

No.	Residues
1	A:4	-	A:17
2	A:25	-	A:38
3	A:56	-	A:68
4	A:93	-	A:116
5	A:98	-	A:111
6	B:4	-	B:17
7	B:25	-	B:38
8	B:56	-	B:68
9	B:93	-	B:116
10	B:98	-	B:111
11	C:4	-	C:17
12	C:25	-	C:38
13	C:56	-	C:68
14	C:93	-	C:116
15	C:98	-	C:111
16	D:4	-	D:17
17	D:25	-	D:38
18	D:56	-	D:68
19	D:93	-	D:116
20	D:98	-	D:111

(no "Cis Peptide Bond" information available for 1M8N)

(no "SAP(SNP)/Variant" information available for 1M8N)

(no "PROSITE Motif" information available for 1M8N)

(no "Exon" information available for 1M8N)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:120
 aligned with Q9GSA6_CHOFU | Q9GSA6 from UniProtKB/TrEMBL  Length:138

    Alignment length:120
                                    28        38        48        58        68        78        88        98       108       118       128       138
         Q9GSA6_CHOFU    19 GTCVNTNSQITANSQCVKSTATNCYIDNSQLVDTSICTRSQYSDANVKKSVTTDCNIDKSQVYLTTCTGSQYNGIYIRSSTTTGTSISGPGCSISTCTITRGVATPAAACKISGCSLSAM 138
               SCOP domains d1m8na_ A: Thermal hysteresis protein                                                                                    SCOP domains
               CATH domains 1m8nA00 A:2-121  [code=2.160.10.20, no name defined]                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee..ee....ee...eee..eee..eee...eee..eee..eee..eee..eee..eee..eee..eeeeeeee..eee.eeeeeeeeeee..eee..ee......eee..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1m8n A   2 GTCVNTNSQITANSQCVKSTATNCYIDNSQLVDTSICTRSQYSDANVKKSVTTDCNIDKSQVYLTTCTGSQYNGIYIRSSTTTGTSISGPGCSISTCTITRGVATPAAACKISGCSLSAM 121
                                    11        21        31        41        51        61        71        81        91       101       111       121

Chain B from PDB  Type:PROTEIN  Length:119
 aligned with Q9GSA6_CHOFU | Q9GSA6 from UniProtKB/TrEMBL  Length:138

    Alignment length:119
                                    29        39        49        59        69        79        89        99       109       119       129         
         Q9GSA6_CHOFU    20 TCVNTNSQITANSQCVKSTATNCYIDNSQLVDTSICTRSQYSDANVKKSVTTDCNIDKSQVYLTTCTGSQYNGIYIRSSTTTGTSISGPGCSISTCTITRGVATPAAACKISGCSLSAM 138
               SCOP domains d1m8nb_ B: Thermal hysteresis protein                                                                                   SCOP domains
               CATH domains 1m8nB00 B:3-121  [code=2.160.10.20, no name defined]                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..ee....eeeeeeee..eee..eeeeeeeee..eee..eee..eee..eee..eee..eee..eeeeeeee..eee.eeeeeeeeeee..eee..ee......eee..eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 1m8n B   3 TCVNTNSQITANSQCVKSTATNCYIDNSQLVDTSICTRSQYSDANVKKSVTTDCNIDKSQVYLTTCTGSQYNGIYIRSSTTTGTSISGPGCSISTCTITRGVATPAAACKISGCSLSAM 121
                                    12        22        32        42        52        62        72        82        92       102       112

Chain C from PDB  Type:PROTEIN  Length:119
 aligned with Q9GSA6_CHOFU | Q9GSA6 from UniProtKB/TrEMBL  Length:138

    Alignment length:119
                                    29        39        49        59        69        79        89        99       109       119       129         
         Q9GSA6_CHOFU    20 TCVNTNSQITANSQCVKSTATNCYIDNSQLVDTSICTRSQYSDANVKKSVTTDCNIDKSQVYLTTCTGSQYNGIYIRSSTTTGTSISGPGCSISTCTITRGVATPAAACKISGCSLSAM 138
               SCOP domains d1m8nc_ C: Thermal hysteresis protein                                                                                   SCOP domains
               CATH domains 1m8nC00 C:3-121  [code=2.160.10.20, no name defined]                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..ee....eee.eeee..eee..eee...eee..eee..eee..eee..eee..eee..eee..eeeeeeee..eee.eeeeeeeeeee..eee..ee......eee..eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 1m8n C   3 TCVNTNSQITANSQCVKSTATNCYIDNSQLVDTSICTRSQYSDANVKKSVTTDCNIDKSQVYLTTCTGSQYNGIYIRSSTTTGTSISGPGCSISTCTITRGVATPAAACKISGCSLSAM 121
                                    12        22        32        42        52        62        72        82        92       102       112

Chain D from PDB  Type:PROTEIN  Length:120
 aligned with Q9GSA6_CHOFU | Q9GSA6 from UniProtKB/TrEMBL  Length:138

    Alignment length:120
                                    28        38        48        58        68        78        88        98       108       118       128       138
         Q9GSA6_CHOFU    19 GTCVNTNSQITANSQCVKSTATNCYIDNSQLVDTSICTRSQYSDANVKKSVTTDCNIDKSQVYLTTCTGSQYNGIYIRSSTTTGTSISGPGCSISTCTITRGVATPAAACKISGCSLSAM 138
               SCOP domains d1m8nd_ D: Thermal hysteresis protein                                                                                    SCOP domains
               CATH domains 1m8nD00 D:2-121  [code=2.160.10.20, no name defined]                                                                     CATH domains
           Pfam domains (1) CfAFP-1m8nD01 D:2-121                                                                                                    Pfam domains (1)
           Pfam domains (2) CfAFP-1m8nD02 D:2-121                                                                                                    Pfam domains (2)
           Pfam domains (3) CfAFP-1m8nD03 D:2-121                                                                                                    Pfam domains (3)
           Pfam domains (4) CfAFP-1m8nD04 D:2-121                                                                                                    Pfam domains (4)
         Sec.struct. author ........................................................................................................................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 1m8n D   2 GTCVNTNSQITANSQCVKSTATNCYIDNSQLVDTSICTRSQYSDANVKKSVTTDCNIDKSQVYLTTCTGSQYNGIYIRSSTTTGTSISGPGCSISTCTITRGVATPAAACKISGCSLSAM 121
                                    11        21        31        41        51        61        71        81        91       101       111       121

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Single-stranded left-handed beta-helix (154)

Superfamily: An insect antifreeze protein (5)

Family: An insect antifreeze protein (5)

Protein domain: Thermal hysteresis protein (4)

Spruce budworm (Choristoneura fumiferana), 7-turn isoforms [TaxId: 7141] (1)

1a	d1m8na_	A:
1b	d1m8nb_	B:
1c	d1m8nc_	C:
1d	d1m8nd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: 3 Solenoid (196)

Topology: UDP N-Acetylglucosamine Acyltransferase; domain 1 (90)

Homologous Superfamily: [code=2.160.10.20, no name defined] (5)

Spruce budworm (Choristoneura fumiferana) (5)

1a	1m8nB00	B:3-121
1b	1m8nC00	C:3-121
1c	1m8nA00	A:2-121
1d	1m8nD00	D:2-121

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: CfAFP] (4)

Family: CfAFP (4)

Choristoneura fumiferana (Spruce budworm) (4)

1a	CfAFP-1m8nD01	D:2-121
1b	CfAFP-1m8nD02	D:2-121
1c	CfAFP-1m8nD03	D:2-121
1d	CfAFP-1m8nD04	D:2-121

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1M8N)

Asymmetric Unit
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1l0s	CHORISTONEURA FUMIFERANA (SPRUCE BUDWORM) ANTIFREEZE PROTEIN ISOFORM 337

Description

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