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(-) Description

Title :  NMR STRUCTURE OF THE GPU TAIL PROTEIN FROM LAMBDA BACTERIOPHAGE
 
Authors :  L. Edmonds, K. Maxwell, A. Davidson, L. W. Donaldson
Date :  07 Mar 05  (Deposition) - 18 Apr 06  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
Keywords :  Mixed Alpha-Beta, Tail Protein, Bacteriophage, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Edmonds, A. Liu, J. J. Kwan, A. Avanessy, M. Caracoglia, I. Yang, K. L. Maxwell, J. Rubenstein, A. R. Davidson, L. W. Donaldson
The Nmr Structure Of The Gpu Tail-Terminator Protein From Bacteriophage Lambda: Identification Of Sites Contributing To Mg(Ii)-Mediated Oligomerization And Biological Function.
J. Mol. Biol. V. 365 175 2007
PubMed-ID: 17056065  |  Reference-DOI: 10.1016/J.JMB.2006.09.068
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MINOR TAIL PROTEIN U
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GPU
    Organism Scientific: ENTEROBACTERIA PHAGE LAMBDA
    Organism Taxid: 10710
    Other Details: THE FULL GPU GENE WAS INSERTED INTO THE NDEI AND BAMHI SITES OF PET15B RESULTING IN AN AMINO TERMINALLY HEXAHISTIDINE TAGGED FUSION PROTEIN WITH AN INTERVENING THROMBIN PROTEASE CLEAVAGE SITE

 Structural Features

(-) Chains, Units

  
NMR Structure : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1Z1Z)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:129
 aligned with TTTP_LAMBD | P03732 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:129
                                    11        21        31        41        51        61        71        81        91       101       111       121         
           TTTP_LAMBD     2 KHTELRAAVLDALEKHDTGATFFDGRPAVFDEADFPAVAVYLTGAEYTGEELDSDTWQAELHIEVFLPAQVPDSELDAWMESRIYPVMSDIPALSDLITSMVASGYDYRRDDDAGLWSSADLTYVITYE 130
               SCOP domains d1z1za1 A:2-130 Minor tail protein gpU                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh....ee.......hhhhh.eeeeee.................eeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeee........eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1z1z A   2 KHTELRAAVLDALEKHDTGATFFDGRPAVFDEADFPAVAVYLTGAEYTGEELDSDTWQAELHIEVFLPAQVPDSELDAWMESRIYPVMSDIPALSDLITSMVASGYDYRRDDDAGLWSSADLTYVITYE 130
                                    11        21        31        41        51        61        71        81        91       101       111       121
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1Z1Z)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (TTTP_LAMBD | P03732)
biological process
    GO:0019076    viral release from host cell    The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0098015    virus tail    Part of the virion that may be used to recognize, attach and inject the viral genome and accessory proteins into the host cell.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TTTP_LAMBD | P03732: 3fz2 3fzb

(-) Related Entries Specified in the PDB File

1in0 HOMOLOGOUS TERTIARY STRUCTURE