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(-) Description

Title :  THEORETICAL MODEL OF DC-SIGNR ECTODOMAIN TETRAMER
 
Authors :  G. A. Snyder, M. Colonna, P. D. Sun
Date :  02 Mar 05  (Deposition) - 19 Apr 05  (Release) - 19 Apr 05  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B,C,D
Keywords :  C-Type Lectin, Carbohydrate Binding Protein, Tetramer Model (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. A. Snyder, M. Colonna, P. D. Sun
The Structure Of Dc-Signr With A Portion Of Its Repeat Domain Lends Insights To Modeling Of The Receptor Tetramer
J. Mol. Biol. V. 347 979 2005
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CD209 ANTIGEN-LIKE PROTEIN 1
    Chains: A, B, C, D
    Engineered: YES
    Fragment: MODEL TETRAMER DC-SIGNR
    Gene: CD209L, CD209L1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Synonym: DENDRITIC CELL-SPECIFIC ICAM-3-GRABBING NONINTEGRIN 2, DC-SIGN2, DC-SIGN RELATED PROTEIN, DC-SIGNR, LIVER/LYMPH NODE-SPECIFIC ICAM-3-GRABBING NONINTEGRIN, L- SIGN

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1Z0Y)

(-) Sites  (0, 0)

(no "Site" information available for 1Z0Y)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1Z0Y)

(-) Cis Peptide Bonds  (4, 4)

Theoretical Model
No.Residues
1Glu A:359 -Pro A:360
2Glu B:359 -Pro B:360
3Glu C:359 -Pro C:360
4Glu D:359 -Pro D:360

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (4, 16)

Theoretical Model (4, 16)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_050107R164QCLC4M_HUMANPolymorphism11465376A/B/C/DR164Q
2UniProtVAR_050108Y205CCLC4M_HUMANPolymorphism479448A/B/C/DY205C
3UniProtVAR_050109Y251CCLC4M_HUMANPolymorphism479448A/B/C/DY251C
4UniProtVAR_021957D291NCLC4M_HUMANPolymorphism2277998A/B/C/DD291N
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 8)

Theoretical Model (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1C_TYPE_LECTIN_2PS50041 C-type lectin domain profile.CLC4M_HUMAN275-390
 
 
 		  4A:275-390
B:275-390
C:275-390
D:275-390
2C_TYPE_LECTIN_1PS00615 C-type lectin domain signature.CLC4M_HUMAN368-389
 
 
 		  4A:368-389
B:368-389
C:368-389
D:368-389

(-) Exons   (4, 16)

Theoretical Model (4, 16)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000003273251ENSE00001352561chr19:7828035-7828198164CLC4M_HUMAN1-16160--
1.2bENST000003273252bENSE00000874625chr19:7828279-782836284CLC4M_HUMAN16-44290--
1.3bENST000003273253bENSE00000874626chr19:7830071-783015484CLC4M_HUMAN44-72290--
1.5cENST000003273255cENSE00001767528chr19:7830524-7831093570CLC4M_HUMAN72-2621914A:85-262
B:85-262
C:85-262
D:85-262		178
178
178
178
1.6ENST000003273256ENSE00001659039chr19:7831542-7831693152CLC4M_HUMAN262-312514A:262-312
B:262-312
C:262-312
D:262-312		51
51
51
51
1.7ENST000003273257ENSE00001609676chr19:7832402-7832514113CLC4M_HUMAN313-350384A:313-350
B:313-350
C:313-350
D:313-350		38
38
38
38
1.8ENST000003273258ENSE00001792189chr19:7833724-7834490767CLC4M_HUMAN350-399504A:350-398
B:350-398
C:350-398
D:350-398		49
49
49
49

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:314
 aligned with CLC4M_HUMAN | Q9H2X3 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:314
                                    94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394    
          CLC4M_HUMAN    85 EQDAIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLCRHCPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSWMGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCAEFSGSGWNDNRCDVDNYWICKKPAACFRD 398
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhh...............................hhhhhhhhhhhhhhhhh......hhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhh.........hhhhhh...hhhhhhh..........hhhhh...hhhhhhh..........................hhhhhh..................hhhhh................................................................................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------Q----------------------------------------C---------------------------------------------C---------------------------------------N----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_2  PDB: A:275-390 UniProt: 275-390                                                                    -------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1       --------- PROSITE (2)
           Transcript 1 (1) Exon 1.5c  PDB: A:85-262 UniProt: 72-262 [INCOMPLETE]                                                                                                                             --------------------------------------------------Exon 1.7  PDB: A:313-350              ------------------------------------------------ Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: A:262-312 UniProt: 262-312          -------------------------------------Exon 1.8  PDB: A:350-398 UniProt: 350-399         Transcript 1 (2)
                 1z0y A  85 EQDAIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLCRHCPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSWMGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCAEFSGSGWNDNRCDVDNYWICKKPAACFRD 398
                                    94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394    


Chain B from PDB  Type:PROTEIN  Length:314
 aligned with CLC4M_HUMAN | Q9H2X3 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:314
                                    94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394    
          CLC4M_HUMAN    85 EQDAIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLCRHCPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSWMGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCAEFSGSGWNDNRCDVDNYWICKKPAACFRD 398
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh....hhhhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhh......................hhhhhhhhhh.hhhhhh........hhhhhhhhhh...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhh...................hhhhhh................................hhhhh............hhhhh.................................................................................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------Q----------------------------------------C---------------------------------------------C---------------------------------------N----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_2  PDB: B:275-390 UniProt: 275-390                                                                    -------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1       --------- PROSITE (2)
           Transcript 1 (1) Exon 1.5c  PDB: B:85-262 UniProt: 72-262 [INCOMPLETE]                                                                                                                             --------------------------------------------------Exon 1.7  PDB: B:313-350              ------------------------------------------------ Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: B:262-312 UniProt: 262-312          -------------------------------------Exon 1.8  PDB: B:350-398 UniProt: 350-399         Transcript 1 (2)
                 1z0y B  85 EQDAIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLCRHCPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSWMGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCAEFSGSGWNDNRCDVDNYWICKKPAACFRD 398
                                    94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394    


Chain C from PDB  Type:PROTEIN  Length:314
 aligned with CLC4M_HUMAN | Q9H2X3 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:314
                                    94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394    
          CLC4M_HUMAN    85 EQDAIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLCRHCPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSWMGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCAEFSGSGWNDNRCDVDNYWICKKPAACFRD 398
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh..............hhhhhhhhhhhh....hhhhhhhhhhhhhh............hhhhh...hhhhhhh.....hhhhhh..hhhhhh..hhhhhh.hhhhhhhhhhh......hhhhh........hhhhhh.hhhhhh...........hhhhh.hhhhhh..................................hhhhhh.ee...........hhhhhh....................................................................ee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------Q----------------------------------------C---------------------------------------------C---------------------------------------N----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_2  PDB: C:275-390 UniProt: 275-390                                                                    -------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1       --------- PROSITE (2)
           Transcript 1 (1) Exon 1.5c  PDB: C:85-262 UniProt: 72-262 [INCOMPLETE]                                                                                                                             --------------------------------------------------Exon 1.7  PDB: C:313-350              ------------------------------------------------ Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: C:262-312 UniProt: 262-312          -------------------------------------Exon 1.8  PDB: C:350-398 UniProt: 350-399         Transcript 1 (2)
                 1z0y C  85 EQDAIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLCRHCPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSWMGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCAEFSGSGWNDNRCDVDNYWICKKPAACFRD 398
                                    94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394    


Chain D from PDB  Type:PROTEIN  Length:314
 aligned with CLC4M_HUMAN | Q9H2X3 from UniProtKB/Swiss-Prot  Length:399

    Alignment length:314
                                    94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394    
          CLC4M_HUMAN    85 EQDAIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLCRHCPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSWMGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCAEFSGSGWNDNRCDVDNYWICKKPAACFRD 398
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh.....hhhhh.......hhhhh.............hhhhhh........hhhhhhhhh.hhhhhhhhhhhhh.........hhhhhhhhhh..hhhhhh..hhhhhhh................hhhhhhhhhhhhh......hhhhh.........hhhhhh.........................hhhhh..............hhhhh.......................................................ee........ee................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------Q----------------------------------------C---------------------------------------------C---------------------------------------N----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_2  PDB: D:275-390 UniProt: 275-390                                                                    -------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1       --------- PROSITE (2)
           Transcript 1 (1) Exon 1.5c  PDB: D:85-262 UniProt: 72-262 [INCOMPLETE]                                                                                                                             --------------------------------------------------Exon 1.7  PDB: D:313-350              ------------------------------------------------ Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: D:262-312 UniProt: 262-312          -------------------------------------Exon 1.8  PDB: D:350-398 UniProt: 350-399         Transcript 1 (2)
                 1z0y D  85 EQDAIYQNLTQLKAAVGELSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLCRHCPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSWMGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCAEFSGSGWNDNRCDVDNYWICKKPAACFRD 398
                                    94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1Z0Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1Z0Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1Z0Y)

(-) Gene Ontology  (32, 32)

Theoretical Model(hide GO term definitions)
Chain A,B,C,D   (CLC4M_HUMAN | Q9H2X3)
molecular function
    GO:0030369    ICAM-3 receptor activity    Combining with ICAM-3, intercellular adhesion molecule 3, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. ICAM-3, or CD50, are constitutively expressed on monocytes, granulocytes and lymphocytes; on physiological stimulation, they become transiently phosphorylated on serine residues.
    GO:0048306    calcium-dependent protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium.
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0005537    mannose binding    Interacting selectively and non-covalently with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0042605    peptide antigen binding    Interacting selectively and non-covalently with an antigen peptide.
    GO:0004872    receptor activity    Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
    GO:0046790    virion binding    Interacting selectively and non-covalently with a virion, either by binding to components of the capsid or the viral envelope.
    GO:0001618    virus receptor activity    Combining with a virus component and mediating entry of the virus into the cell.
biological process
    GO:0002250    adaptive immune response    An immune response mediated by cells expressing specific receptors for antigen produced through a somatic diversification process, and allowing for an enhanced secondary response to subsequent exposures to the same antigen (immunological memory).
    GO:0019882    antigen processing and presentation    The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.
    GO:0009988    cell-cell recognition    Cell recognition between cells. May involve the formation of specialized cell junctions.
    GO:0006897    endocytosis    A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0075733    intracellular transport of virus    The directed movement of a virus, or part of a virus, within the host cell.
    GO:0007159    leukocyte cell-cell adhesion    The attachment of a leukocyte to another cell via adhesion molecules.
    GO:0019048    modulation by virus of host morphology or physiology    The process in which a virus effects a change in the structure or processes of its host organism.
    GO:0046968    peptide antigen transport    The directed movement of a peptide antigen into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. The peptide antigen is typically, but not always, processed from an endogenous or exogenous protein.
    GO:0030193    regulation of blood coagulation    Any process that modulates the frequency, rate or extent of blood coagulation.
    GO:0010468    regulation of gene expression    Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0019079    viral genome replication    Any process involved directly in viral genome replication, including viral nucleotide metabolism.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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    Glu A:359 - Pro A:360   [ RasMol ]  
    Glu B:359 - Pro B:360   [ RasMol ]  
    Glu C:359 - Pro C:360   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLC4M_HUMAN | Q9H2X3: 1k9j 1sl6 1xar 1xph 3jqh

(-) Related Entries Specified in the PDB File

1xph CRYSTAL STRUCTURE OF APO FROM DC-SIGNR CRD AND A PORTION OF REPEAT DOMAIN 8