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1Z0Y
Theor. Model
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Theoretical Model (132 KB)
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(1)
Title
:
THEORETICAL MODEL OF DC-SIGNR ECTODOMAIN TETRAMER
Authors
:
G. A. Snyder, M. Colonna, P. D. Sun
Date
:
02 Mar 05 (Deposition) - 19 Apr 05 (Release) - 19 Apr 05 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A,B,C,D
Keywords
:
C-Type Lectin, Carbohydrate Binding Protein, Tetramer Model
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. A. Snyder, M. Colonna, P. D. Sun
The Structure Of Dc-Signr With A Portion Of Its Repeat Domain Lends Insights To Modeling Of The Receptor Tetramer
J. Mol. Biol. V. 347 979 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(4, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_050107 (R164Q, chain A/B/C/D, )
2: VAR_050108 (Y205C, chain A/B/C/D, )
3: VAR_050109 (Y251C, chain A/B/C/D, )
4: VAR_021957 (D291N, chain A/B/C/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050107
R
164
Q
CLC4M_HUMAN
Polymorphism
11465376
A/B/C/D
R
164
Q
2
UniProt
VAR_050108
Y
205
C
CLC4M_HUMAN
Polymorphism
479448
A/B/C/D
Y
205
C
3
UniProt
VAR_050109
Y
251
C
CLC4M_HUMAN
Polymorphism
479448
A/B/C/D
Y
251
C
4
UniProt
VAR_021957
D
291
N
CLC4M_HUMAN
Polymorphism
2277998
A/B/C/D
D
291
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_2 (A:275-390,B:275-390,C:275-390,D:27...)
2: C_TYPE_LECTIN_1 (A:368-389,B:368-389,C:368-389,D:36...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
CLC4M_HUMAN
275-390
4
A:275-390
B:275-390
C:275-390
D:275-390
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
CLC4M_HUMAN
368-389
4
A:368-389
B:368-389
C:368-389
D:368-389
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Exons
(4, 16)
Info
All Exons
Exon 1.5c (A:85-262 | B:85-262 | C:85-262 | D...)
Exon 1.6 (A:262-312 | B:262-312 | C:262-312 ...)
Exon 1.7 (A:313-350 | B:313-350 | C:313-350 ...)
Exon 1.8 (A:350-398 | B:350-398 | C:350-398 ...)
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All Exon Boundaries
1: Boundary 1.3b/1.5c
2: Boundary 1.5c/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000327325
1
ENSE00001352561
chr19:
7828035-7828198
164
CLC4M_HUMAN
1-16
16
0
-
-
1.2b
ENST00000327325
2b
ENSE00000874625
chr19:
7828279-7828362
84
CLC4M_HUMAN
16-44
29
0
-
-
1.3b
ENST00000327325
3b
ENSE00000874626
chr19:
7830071-7830154
84
CLC4M_HUMAN
44-72
29
0
-
-
1.5c
ENST00000327325
5c
ENSE00001767528
chr19:
7830524-7831093
570
CLC4M_HUMAN
72-262
191
4
A:85-262
B:85-262
C:85-262
D:85-262
178
178
178
178
1.6
ENST00000327325
6
ENSE00001659039
chr19:
7831542-7831693
152
CLC4M_HUMAN
262-312
51
4
A:262-312
B:262-312
C:262-312
D:262-312
51
51
51
51
1.7
ENST00000327325
7
ENSE00001609676
chr19:
7832402-7832514
113
CLC4M_HUMAN
313-350
38
4
A:313-350
B:313-350
C:313-350
D:313-350
38
38
38
38
1.8
ENST00000327325
8
ENSE00001792189
chr19:
7833724-7834490
767
CLC4M_HUMAN
350-399
50
4
A:350-398
B:350-398
C:350-398
D:350-398
49
49
49
49
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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