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(-) Description

Title :  NMR STRUCTURE OF CALSENSIN, ENERGY MINIMIZED AVERAGE STRUCTURE.
 
Authors :  D. V. Venkitaramani, D. B. Fulton, A. H. Andreotti, K. M. Johansen, J. Johansen
Date :  19 Feb 05  (Deposition) - 01 Apr 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
Keywords :  Calsensin, Calcium-Binding Protein Ef-Hand, Helix-Loop- Helix, Nervous System, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. V. Venkitaramani, D. B. Fulton, A. H. Andreotti, K. M. Johansen, J. Johansen
Solution Structure And Backbone Dynamics Of Calsensin, An Invertebrate Neuronal Calcium-Binding Protein.
Protein Sci. V. 14 1894 2005
PubMed-ID: 15937283  |  Reference-DOI: 10.1110/PS.051412605
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CALSENSIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PGEX4T3
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: HAEMOPIS MARMORATA
    Organism Taxid: 38567
    Synonym: LAN3-6 ANTIGEN

 Structural Features

(-) Chains, Units

  
NMR Structure : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1YX7)

(-) Sites  (0, 0)

(no "Site" information available for 1YX7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YX7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YX7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YX7)

(-) PROSITE Motifs  (2, 4)

NMR Structure (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.CLSS_HAEMA4-39
46-81		  2A:4-39
A:46-81
2EF_HAND_1PS00018 EF-hand calcium-binding domain.CLSS_HAEMA17-29
59-71		  2A:17-29
A:59-71

(-) Exons   (0, 0)

(no "Exon" information available for 1YX7)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:83
 aligned with CLSS_HAEMA | Q25088 from UniProtKB/Swiss-Prot  Length:83

    Alignment length:83
                                    10        20        30        40        50        60        70        80   
            CLSS_HAEMA    1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNANAELLCQLK 83
               SCOP domains d1yx7a_ A: automated matches                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------efhand-1yx7A01 A:52-78     ----- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------efhand-1yx7A02 A:52-78     ----- Pfam domains (2)
         Sec.struct. author ......hhhhhhhhhhh.......hhhhhhhhhhhhh.........hhhhhhhhhh..........hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---EF_HAND_2  PDB: A:4-39 UniProt: 4-39------EF_HAND_2  PDB: A:46-81             -- PROSITE (1)
                PROSITE (2) ----------------EF_HAND_1    -----------------------------EF_HAND_1    ------------ PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------- Transcript
                  1yx7 A  1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNANAELLCQLK 83
                                    10        20        30        40        50        60        70        80
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1YX7)

(-) Pfam Domains  (1, 2)

NMR Structure
(-)
Clan: EF_hand (270)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (CLSS_HAEMA | Q25088)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1yx7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLSS_HAEMA | Q25088: 1yx8

(-) Related Entries Specified in the PDB File

1yx8