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(-) Description

Title :  CRYSTALLOGRAPHIC STRUCTURE OF RESPONSE REGULATOR STYR FROM PSEUDOMONAS FLUORESCENS
 
Authors :  M. Milani, L. Leoni, G. Rampioni, E. Zennaro, P. Ascenzi, M. Bolognesi
Date :  12 Jan 05  (Deposition) - 27 Sep 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Transcription Regulation, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Milani, L. Leoni, G. Rampioni, E. Zennaro, P. Ascenzi, M. Bolognesi
An Active-Like Structure In The Unphosphorylated Styr Response Regulator Suggests A Phosphorylation- Dependent Allosteric Activation Mechanism
Structure V. 13 1289 2005
PubMed-ID: 16154086  |  Reference-DOI: 10.1016/J.STR.2005.05.014
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RESPONSE REGULATORY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: PSEUDOMONAS FLUORESCENS
    Organism Taxid: 294
    Synonym: RESPONSE REGULATOR STYR

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1HG3Ligand/IonMERCURY (II) ION
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:35 , CYS A:36 , ALA A:37 , SER A:38 , THR A:39BINDING SITE FOR RESIDUE HG A 209
2AC2SOFTWAREHIS A:43 , HOH A:282BINDING SITE FOR RESIDUE HG A 210
3AC3SOFTWAREGLY A:50 , CYS A:51 , LEU A:120BINDING SITE FOR RESIDUE HG A 211
4AC4SOFTWAREASP A:12 , ASP A:55 , ARG A:57 , HOH A:217 , HOH A:218 , HOH A:219BINDING SITE FOR RESIDUE MG A 212

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YIO)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:105 -Pro A:106

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YIO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YIO)

(-) Exons   (0, 0)

(no "Exon" information available for 1YIO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:198
 aligned with O30989_PSEFL | O30989 from UniProtKB/TrEMBL  Length:208

    Alignment length:198
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192        
         O30989_PSEFL     3 AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARETQDQLEQLFSSLTGREQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHLVEKY 200
               SCOP domains d1yioa2 A:3-130 Response regulatory protein StyR, N-terminal domain                                                             d1yioa1 A:131-200 Response regulatory protein StyR, C-terminal domain  SCOP domains
               CATH domains 1yioA01 A:3-141  [code=3.40.50.2300, no name defined]                                                                                      1yioA02 A:142-200                                           CATH domains
               Pfam domains ----Response_reg-1yioA01 A:7-117                                                                                   ----------------------GerE-1yioA02 A:140-197                                    --- Pfam domains
         Sec.struct. author ...eeeee..hhhhhhhhhhhhhh...eeeee.hhhhhhhhh.....eeeeee......hhhhhhhhhhhh.....eeeee.......hhhhhhh.eeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1yio A   3 AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARETQDQLEQLFSSLTGREQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHLVEKY 200
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: CheY (97)
(-)
Clan: HTH (544)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (O30989_PSEFL | O30989)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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 Related Entries

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UniProtKB/TrEMBL
        O30989_PSEFL | O30989: 1zn2

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