Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF THE COMPLEX OF TRYPANOSOMA CRUZI FARNESYL DISPHOSPHATE SYNTHASE WITH ALENDRONATE, ISOPENTENYL DIPHOSPHATE AND MG+2
 
Authors :  S. B. Gabelli, J. S. Mclellan, A. Montalvetti, E. Oldfield, R. Docampo,
Date :  09 Jan 05  (Deposition) - 20 Dec 05  (Release) - 17 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (2x)
Keywords :  Farnesyl Diphosphate Synthase, Alendronate, Isopentenyl Diphosphate, Mevalonate Patway, Geranyl Transferase, Dimethylallyl Transferase, Fpps, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. B. Gabelli, J. S. Mclellan, A. Montalvetti, E. Oldfield, R. Docampo L. M. Amzel
Structure And Mechanism Of The Farnesyl Diphosphate Synthas From Trypanosoma Cruzi: Implications For Drug Design.
Proteins V. 62 80 2005
PubMed-ID: 16288456  |  Reference-DOI: 10.1002/PROT.20754

(-) Compounds

Molecule 1 - FARNESYL PYROPHOSPHATE SYNTHASE
    ChainsA, B, C
    EC Number2.5.1.10
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainB834
    Expression System Taxid562
    Expression System Vector TypePET28
    GeneTCFPPS
    Organism ScientificTRYPANOSOMA CRUZI
    Organism Taxid5693

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit ABC
Biological Unit 1 (1x)AB 
Biological Unit 2 (2x)  C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 63)

Asymmetric Unit (5, 63)
No.NameCountTypeFull Name
1AHD3Ligand/Ion4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE
2IPE3Ligand/Ion3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE
3MG9Ligand/IonMAGNESIUM ION
4MSE45Mod. Amino AcidSELENOMETHIONINE
5SO43Ligand/IonSULFATE ION
Biological Unit 1 (4, 36)
No.NameCountTypeFull Name
1AHD2Ligand/Ion4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE
2IPE2Ligand/Ion3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4MSE30Mod. Amino AcidSELENOMETHIONINE
5SO42Ligand/IonSULFATE ION
Biological Unit 2 (4, 36)
No.NameCountTypeFull Name
1AHD2Ligand/Ion4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE
2IPE2Ligand/Ion3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE
3MG-1Ligand/IonMAGNESIUM ION
4MSE30Mod. Amino AcidSELENOMETHIONINE
5SO42Ligand/IonSULFATE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:250 , AHD A:901 , HOH A:905 , HOH A:906BINDING SITE FOR RESIDUE MG A 401
02AC2SOFTWAREASP A:98 , ASP A:102 , MG A:403 , AHD A:901 , HOH A:902 , HOH A:903BINDING SITE FOR RESIDUE MG A 402
03AC3SOFTWAREASP A:98 , ASP A:102 , ASP A:170 , MG A:402 , AHD A:901 , HOH A:904 , HOH A:907BINDING SITE FOR RESIDUE MG A 403
04AC4SOFTWAREHIS A:141 , LYS B:158BINDING SITE FOR RESIDUE SO4 A 370
05AC5SOFTWAREGLN B:21 , HIS B:141BINDING SITE FOR RESIDUE SO4 B 1370
06AC6SOFTWAREGLN C:21 , HIS C:141BINDING SITE FOR RESIDUE SO4 C 2370
07AC7SOFTWAREASP B:250 , AHD B:1901 , HOH B:1906 , HOH B:1907 , HOH B:1909BINDING SITE FOR RESIDUE MG B 1401
08AC8SOFTWAREASP B:98 , ASP B:102 , MG B:1403 , AHD B:1901 , HOH B:1903 , HOH B:1904BINDING SITE FOR RESIDUE MG B 1402
09AC9SOFTWAREASP B:98 , ASP B:102 , ASP B:170 , MG B:1402 , AHD B:1901 , HOH B:1902 , HOH B:1905 , HOH B:1908BINDING SITE FOR RESIDUE MG B 1403
10BC1SOFTWAREASP C:250 , AHD C:2901 , HOH C:2906 , HOH C:2907 , HOH C:2909BINDING SITE FOR RESIDUE MG C 2401
11BC2SOFTWAREASP C:98 , ASP C:102 , MG C:2403 , AHD C:2901 , HOH C:2903 , HOH C:2904BINDING SITE FOR RESIDUE MG C 2402
12BC3SOFTWAREASP C:98 , ASP C:102 , MG C:2402 , AHD C:2901 , HOH C:2902 , HOH C:2905 , HOH C:2908BINDING SITE FOR RESIDUE MG C 2403
13BC4SOFTWAREASP A:98 , ASP A:102 , ARG A:107 , LYS A:207 , TYR A:211 , GLN A:247 , ASP A:250 , LYS A:264 , MG A:401 , MG A:402 , MG A:403 , IPE A:900 , HOH A:902 , HOH A:903 , HOH A:904 , HOH A:905 , HOH A:906BINDING SITE FOR RESIDUE AHD A 901
14BC5SOFTWAREGLY A:47 , LYS A:48 , ARG A:51 , GLN A:91 , ARG A:108 , THR A:208 , TYR A:211 , PHE A:246 , LYS A:362 , AHD A:901BINDING SITE FOR RESIDUE IPE A 900
15BC6SOFTWAREASP B:98 , ASP B:102 , ARG B:107 , LYS B:207 , TYR B:211 , GLN B:247 , ASP B:250 , LYS B:264 , MG B:1401 , MG B:1402 , MG B:1403 , IPE B:1900 , HOH B:1902 , HOH B:1904 , HOH B:1905 , HOH B:1906 , HOH B:1907 , HOH B:1909BINDING SITE FOR RESIDUE AHD B 1901
16BC7SOFTWAREGLY B:47 , LYS B:48 , ARG B:51 , GLN B:91 , ARG B:108 , THR B:208 , TYR B:211 , PHE B:246 , ASP B:250 , LYS B:362 , AHD B:1901 , HOH B:1924 , HOH B:1932 , HOH B:1943BINDING SITE FOR RESIDUE IPE B 1900
17BC8SOFTWAREASP C:98 , ASP C:102 , ARG C:107 , GLN C:167 , LYS C:207 , GLN C:247 , ASP C:250 , LYS C:264 , MG C:2401 , MG C:2402 , MG C:2403 , IPE C:2900 , HOH C:2902 , HOH C:2904 , HOH C:2905 , HOH C:2906 , HOH C:2907 , HOH C:2909BINDING SITE FOR RESIDUE AHD C 2901
18BC9SOFTWAREGLY C:47 , LYS C:48 , ARG C:51 , GLN C:91 , ARG C:108 , THR C:208 , PHE C:246 , GLN C:247 , ASP C:250 , LYS C:362 , AHD C:2901BINDING SITE FOR RESIDUE IPE C 2900

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YHM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YHM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YHM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YHM)

(-) Exons   (0, 0)

(no "Exon" information available for 1YHM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:362
 aligned with Q8WS26_TRYCR | Q8WS26 from UniProtKB/TrEMBL  Length:425

    Alignment length:362
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423  
         Q8WS26_TRYCR    64 MASMERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLLVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGEKDPAKVAVVKRLYSKANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK 425
               SCOP domains d1yhma_ A: automated matches                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -1yhmA00 A:2-362 Farnesyl Diphosphate Synthase                                                                                                                                                                                                                                                                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee..ee.hhhh...hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yhm A   1 mASmERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRImmDTTCLGGKYFRGmTVVNVAEGFLAVTQHDEATKERILHDACVGGWmIEFLQAHYLVEDDImDGSVmRRGKPCWYRFPGVTTQCAINDGIILKSWTQImAWHYFADRPFLKDLLCLFQKVDYATAVGQmYDVTSmCDSNKLDPEVAQPmTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVmGLFVSEAAASVEmNLVERVAHLIGEYFQVQDDVmDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK 362
                            |  |    10        20        30        40        50  |     60        70        80     |  90       100|    | 110       120       130       140       150       160       170   |   180       190       200       210       220       230 |     240       250  |    260       270       280       290       300       310       320       330       340       350       360  
                            |  |                                 39-MSE        53-MSE                           86-MSE        101-MSE|                             138-MSE                       168-MSE |           188-MSE                        219-MSE      232-MSE              253-MSE                                                                                                         
                            1-MSE                                 40-MSE                                                           106-MSE                                                             174-MSE                                                                                                                                                                                        
                               4-MSE                                                                                                                                                                                                                                                                                                                                                                  

Chain B from PDB  Type:PROTEIN  Length:362
 aligned with Q8WS26_TRYCR | Q8WS26 from UniProtKB/TrEMBL  Length:425

    Alignment length:362
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423  
         Q8WS26_TRYCR    64 MASMERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLLVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGEKDPAKVAVVKRLYSKANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK 425
               SCOP domains d1yhmb_ B: automated matches                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -1yhmB00 B:2-362 Farnesyl Diphosphate Synthase                                                                                                                                                                                                                                                                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee..ee.hhhh...hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yhm B   1 mASmERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRImmDTTCLGGKYFRGmTVVNVAEGFLAVTQHDEATKERILHDACVGGWmIEFLQAHYLVEDDImDGSVmRRGKPCWYRFPGVTTQCAINDGIILKSWTQImAWHYFADRPFLKDLLCLFQKVDYATAVGQmYDVTSmCDSNKLDPEVAQPmTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVmGLFVSEAAASVEmNLVERVAHLIGEYFQVQDDVmDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK 362
                            |  |    10        20        30        40        50  |     60        70        80     |  90       100|    | 110       120       130       140       150       160       170   |   180       190       200       210       220       230 |     240       250  |    260       270       280       290       300       310       320       330       340       350       360  
                            1-MSE                                39-MSE        53-MSE                           86-MSE        101-MSE|                             138-MSE                       168-MSE |           188-MSE                        219-MSE      232-MSE              253-MSE                                                                                                         
                               4-MSE                              40-MSE                                                           106-MSE                                                             174-MSE                                                                                                                                                                                        

Chain C from PDB  Type:PROTEIN  Length:362
 aligned with Q8WS26_TRYCR | Q8WS26 from UniProtKB/TrEMBL  Length:425

    Alignment length:362
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423  
         Q8WS26_TRYCR    64 MASMERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTCLGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDACVGGWMIEFLQAHYLVEDDIMDGSVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLLVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGEKDPAKVAVVKRLYSKANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK 425
               SCOP domains d1yhmc_ C: automated matches                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -1yhmC00 C:2-362 Farnesyl Diphosphate Synthase                                                                                                                                                                                                                                                                                                                             CATH domains
           Pfam domains (1) ----------------------------------polyprenyl_synt-1yhmC01 C:35-323                                                                                                                                                                                                                                                                 --------------------------------------- Pfam domains (1)
           Pfam domains (2) ----------------------------------polyprenyl_synt-1yhmC02 C:35-323                                                                                                                                                                                                                                                                 --------------------------------------- Pfam domains (2)
           Pfam domains (3) ----------------------------------polyprenyl_synt-1yhmC03 C:35-323                                                                                                                                                                                                                                                                 --------------------------------------- Pfam domains (3)
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee..ee.hhhh..hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yhm C   1 mASmERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRImmDTTCLGGKYFRGmTVVNVAEGFLAVTQHDEATKERILHDACVGGWmIEFLQAHYLVEDDImDGSVmRRGKPCWYRFPGVTTQCAINDGIILKSWTQImAWHYFADRPFLKDLLCLFQKVDYATAVGQmYDVTSmCDSNKLDPEVAQPmTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVmGLFVSEAAASVEmNLVERVAHLIGEYFQVQDDVmDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKSPTFAESVAVVWEKTHKRKK 362
                            |  |    10        20        30        40        50  |     60        70        80     |  90       100|    | 110       120       130       140       150       160       170   |   180       190       200       210       220       230 |     240       250  |    260       270       280       290       300       310       320       330       340       350       360  
                            1-MSE                                39-MSE        53-MSE                           86-MSE        101-MSE|                             138-MSE                       168-MSE |           188-MSE                        219-MSE      232-MSE              253-MSE                                                                                                         
                               4-MSE                              40-MSE                                                           106-MSE                                                             174-MSE                                                                                                                                                                                        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit

(-) CATH Domains  (1, 3)

Asymmetric Unit

(-) Pfam Domains  (1, 3)

Asymmetric Unit

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (Q8WS26_TRYCR | Q8WS26)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0008299    isoprenoid biosynthetic process    The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    AHD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    IPE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1yhm)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1yhm
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q8WS26_TRYCR | Q8WS26
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  2.5.1.10
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  Q8WS26_TRYCR | Q8WS26
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8WS26_TRYCR | Q8WS261yhk 1yhl

(-) Related Entries Specified in the PDB File

1yhk STRUCTURE OF THE TRYPANOSOMA CRUZI FARNESYL DIPHOSPHATE SYNTHASE
1yhl STRUCTURE OF THE COMPLEX OF THE TRYPANOSOMA CRUZI FARNESYL DIPHOSPHATE SYNTHASE WITH RISEDRONATE, DIMETHYLALLYL DIPHOSPHATE AND MG