Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)

(-) Description

Title :  IMPLICATIONS FOR INTERACTIONS OF PROTEASOME WITH PAN AND PA700 FROM THE 1.9 A STRUCTURE OF A PROTEASOME-11S ACTIVATOR COMPLEX
 
Authors :  A. Forster, E. I. Masters, F. G. Whitby, H. Robinson, C. P. Hill
Date :  17 Dec 04  (Deposition) - 26 Jul 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U  (2x)
Keywords :  Archaeal Proteasome, Pa26, Copmlex, Open Gate, Hydrolase-Hydrolase Activator Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Forster, E. I. Masters, F. G. Whitby, H. Robinson, C. P. Hill
The 1. 9 A Structure Of A Proteasome-11S Activator Complex And Implications For Proteasome-Pan/Pa700 Interactions.
Mol. Cell V. 18 589 2005
PubMed-ID: 15916965  |  Reference-DOI: 10.1016/J.MOLCEL.2005.04.016

(-) Compounds

Molecule 1 - PROTEASOME ALPHA SUBUNIT
    Chains: A, B, C, D, E, F, G
    EC Number: 3.4.25.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PRSET5A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PSMA
    Organism Scientific: THERMOPLASMA ACIDOPHILUM
    Organism Taxid: 2303
    Synonym: MULTICATALYTIC ENDOPEPTIDASE COMPLEX ALPHA SUBUNIT
 
Molecule 2 - PROTEASOME BETA SUBUNIT
    Chains: H, I, J, K, L, M, N
    EC Number: 3.4.25.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PRSET5A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PSMB
    Organism Scientific: THERMOPLASMA ACIDOPHILUM
    Organism Taxid: 2303
    Synonym: MULTICATALYTIC ENDOPEPTIDASE COMPLEX BETA SUBUNIT
 
Molecule 3 - PROTEASOME ACTIVATOR PROTEIN PA26
    Chains: O, P, Q, R, S, T, U
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PBTPA
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: TRYPANOSOMA BRUCEI
    Organism Taxid: 5691

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTU
Biological Unit 1 (2x): ABCDEFGHIJKLMNOPQRSTU

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 28)

Asymmetric Unit (2, 28)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2SO421Ligand/IonSULFATE ION
Biological Unit 1 (2, 56)
No.NameCountTypeFull Name
1GOL14Ligand/IonGLYCEROL
2SO442Ligand/IonSULFATE ION

(-) Sites  (28, 28)

Asymmetric Unit (28, 28)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:110 , LYS A:114 , SER B:63 , ILE B:64 , GLU B:65 , GLN B:68 , HOH B:3061 , ARG H:71 , HOH H:3091BINDING SITE FOR RESIDUE SO4 B 3001
02AC2SOFTWAREGLU B:110 , LYS B:114 , ILE C:64 , GLU C:65 , GLN C:68 , HOH C:3063 , ARG I:71BINDING SITE FOR RESIDUE SO4 C 3002
03AC3SOFTWAREGLU C:110 , LYS C:114 , SER D:63 , ILE D:64 , GLU D:65 , GLN D:68 , ARG J:71BINDING SITE FOR RESIDUE SO4 D 3003
04AC4SOFTWAREGLU D:110 , LYS D:114 , SER E:63 , GLU E:65 , GLN E:68 , ARG K:71BINDING SITE FOR RESIDUE SO4 E 3004
05AC5SOFTWAREGLU E:110 , LYS E:114 , SER F:63 , ILE F:64 , GLU F:65 , GLN F:68 , ARG L:71BINDING SITE FOR RESIDUE SO4 F 3005
06AC6SOFTWAREGLU F:110 , LYS F:114 , SER G:63 , ILE G:64 , GLU G:65 , GLN G:68 , ARG M:71BINDING SITE FOR RESIDUE SO4 G 3006
07AC7SOFTWARESER A:63 , GLU A:65 , GLN A:68 , GLU G:110 , LYS G:114 , HOH G:3062 , ARG N:71BINDING SITE FOR RESIDUE SO4 G 3007
08AC8SOFTWARETHR H:1 , GLY H:47 , GLY H:128 , SER H:129 , HOH H:3045 , HOH H:3067BINDING SITE FOR RESIDUE SO4 H 3008
09AC9SOFTWARETHR N:1 , GLY N:47 , GLY N:128 , SER N:129 , HOH N:3073 , HOH N:3080BINDING SITE FOR RESIDUE SO4 N 3009
10BC1SOFTWARETHR M:1 , GLY M:47 , GLY M:128 , SER M:129BINDING SITE FOR RESIDUE SO4 M 3010
11BC2SOFTWARETHR I:1 , GLY I:47 , GLY I:128 , SER I:129BINDING SITE FOR RESIDUE SO4 I 3011
12BC3SOFTWARETHR J:1 , GLY J:47 , GLY J:128 , SER J:129 , HOH J:3092BINDING SITE FOR RESIDUE SO4 J 3012
13BC4SOFTWARETHR K:1 , GLY K:47 , GLY K:128 , SER K:129 , HOH K:3039 , HOH K:3063 , HOH K:3075BINDING SITE FOR RESIDUE SO4 K 3013
14BC5SOFTWARETHR L:1 , GLY L:47 , GLY L:128 , SER L:129 , HOH L:3038 , HOH L:3082 , HOH L:3094BINDING SITE FOR RESIDUE SO4 L 3014
15BC6SOFTWARETYR A:103 , ARG A:115 , ARG H:70 , HOH H:3025 , HOH H:3061 , HOH H:3109BINDING SITE FOR RESIDUE SO4 H 3015
16BC7SOFTWARETYR B:103 , ARG B:115 , ARG I:70 , HOH I:3025 , HOH I:3033 , HOH I:3078BINDING SITE FOR RESIDUE SO4 I 3016
17BC8SOFTWARETYR C:103 , ARG C:115 , GLN J:69 , ARG J:70 , HOH J:3038 , HOH J:3041 , HOH J:3078BINDING SITE FOR RESIDUE SO4 J 3017
18BC9SOFTWARETYR D:103 , ARG D:115 , ARG K:70 , HOH K:3028 , HOH K:3052 , HOH K:3079BINDING SITE FOR RESIDUE SO4 K 3018
19CC1SOFTWARETYR E:103 , ARG E:115 , ARG L:70 , HOH L:3062 , HOH L:3105BINDING SITE FOR RESIDUE SO4 L 3019
20CC2SOFTWARETYR F:103 , ARG F:115 , ARG M:70 , HOH M:3049 , HOH M:3105 , HOH M:3116BINDING SITE FOR RESIDUE SO4 M 3020
21CC3SOFTWARETYR G:103 , ARG G:115 , ARG N:70 , HOH N:3034 , HOH N:3049 , HOH N:3060BINDING SITE FOR RESIDUE SO4 N 3021
22CC4SOFTWAREGLN L:53 , ARG L:57 , LYS L:60BINDING SITE FOR RESIDUE GOL L 2001
23CC5SOFTWAREGLN M:53 , ARG M:57 , LYS M:60 , HOH M:3042 , HOH M:3106BINDING SITE FOR RESIDUE GOL M 2002
24CC6SOFTWAREARG N:57 , LYS N:60 , HOH N:3101BINDING SITE FOR RESIDUE GOL N 2003
25CC7SOFTWAREARG H:57 , LYS H:60 , HOH H:3086 , HOH I:3073BINDING SITE FOR RESIDUE GOL H 2004
26CC8SOFTWAREGLN I:53 , VAL I:56 , ARG I:57 , LYS I:60 , HOH I:3072BINDING SITE FOR RESIDUE GOL I 2005
27CC9SOFTWAREGLN J:53 , VAL J:56 , ARG J:57 , LYS J:60 , HOH J:3063BINDING SITE FOR RESIDUE GOL J 2006
28DC1SOFTWAREGLN K:53 , VAL K:56 , ARG K:57 , LYS K:60 , HOH K:3065 , HOH K:3066BINDING SITE FOR RESIDUE GOL K 2007

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YA7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1YA7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YA7)

(-) PROSITE Motifs  (3, 21)

Asymmetric Unit (3, 21)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEASOME_ALPHA_1PS00388 Proteasome alpha-type subunits signature.PSA_THEAC8-30
 
 
 
 
 
 		  7A:8-30
B:8-30
C:8-30
D:8-30
E:8-30
F:8-30
G:8-30
2PROTEASOME_BETA_1PS00854 Proteasome beta-type subunits signature.PSB_THEAC12-59
 
 
 
 
 
 		  7H:4-51
I:4-51
J:4-51
K:4-51
L:4-51
M:4-51
N:4-51
3PROTEASOME_ALPHA_2PS51475 Proteasome alpha-type subunit profile.PSA_THEAC23-233
 
 
 
 
 
 		  7A:23-233
B:23-233
C:23-233
D:23-233
E:23-233
F:23-233
G:23-233
Biological Unit 1 (3, 42)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PROTEASOME_ALPHA_1PS00388 Proteasome alpha-type subunits signature.PSA_THEAC8-30
 
 
 
 
 
 		  14A:8-30
B:8-30
C:8-30
D:8-30
E:8-30
F:8-30
G:8-30
2PROTEASOME_BETA_1PS00854 Proteasome beta-type subunits signature.PSB_THEAC12-59
 
 
 
 
 
 		  14H:4-51
I:4-51
J:4-51
K:4-51
L:4-51
M:4-51
N:4-51
3PROTEASOME_ALPHA_2PS51475 Proteasome alpha-type subunit profile.PSA_THEAC23-233
 
 
 
 
 
 		  14A:23-233
B:23-233
C:23-233
D:23-233
E:23-233
F:23-233
G:23-233

(-) Exons   (0, 0)

(no "Exon" information available for 1YA7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:227
 aligned with PSA_THEAC | P25156 from UniProtKB/Swiss-Prot  Length:233

    Alignment length:227
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       
            PSA_THEAC     7 AYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
               SCOP domains d1ya7a_ A: automated matches                                                                                                                                                                                                        SCOP domains
               CATH domains 1ya7A00 A:7-233 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhh....eeeeee..eeeeee................eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..........eeeeeeee....eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..........eeeeee.....eeehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -PROTEASOME_ALPHA_1     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------PROTEASOME_ALPHA_2  PDB: A:23-233 UniProt: 23-233                                                                                                                                                                   PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ya7 A   7 AYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       


Chain B from PDB  Type:PROTEIN  Length:227
 aligned with PSA_THEAC | P25156 from UniProtKB/Swiss-Prot  Length:233

    Alignment length:227
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       
            PSA_THEAC     7 AYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
               SCOP domains d1ya7b_ B: automated matches                                                                                                                                                                                                        SCOP domains
               CATH domains 1ya7B00 B:7-233 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhh....eeeeee..eeeeee................eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..........eeeeeeeee..eeeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhh...........eeeeee.....ee.hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -PROTEASOME_ALPHA_1     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------PROTEASOME_ALPHA_2  PDB: B:23-233 UniProt: 23-233                                                                                                                                                                   PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ya7 B   7 AYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       


Chain C from PDB  Type:PROTEIN  Length:227
 aligned with PSA_THEAC | P25156 from UniProtKB/Swiss-Prot  Length:233

    Alignment length:227
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       
            PSA_THEAC     7 AYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
               SCOP domains d1ya7c_ C: automated matches                                                                                                                                                                                                        SCOP domains
               CATH domains 1ya7C00 C:7-233 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhh....eeeeee..eeeeee................eeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..........eeeeeeee....eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhh...........eeeeee.....ee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -PROTEASOME_ALPHA_1     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------PROTEASOME_ALPHA_2  PDB: C:23-233 UniProt: 23-233                                                                                                                                                                   PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ya7 C   7 AYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       


Chain D from PDB  Type:PROTEIN  Length:227
 aligned with PSA_THEAC | P25156 from UniProtKB/Swiss-Prot  Length:233

    Alignment length:227
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       
            PSA_THEAC     7 AYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
               SCOP domains d1ya7d_ D: automated matches                                                                                                                                                                                                        SCOP domains
               CATH domains 1ya7D00 D:7-233 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhh....eeeeee..eeeeee................eeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..........eeeeeeeee..eeeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhh...........eeeeee.....ee.hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -PROTEASOME_ALPHA_1     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------PROTEASOME_ALPHA_2  PDB: D:23-233 UniProt: 23-233                                                                                                                                                                   PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ya7 D   7 AYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       


Chain E from PDB  Type:PROTEIN  Length:227
 aligned with PSA_THEAC | P25156 from UniProtKB/Swiss-Prot  Length:233

    Alignment length:227
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       
            PSA_THEAC     7 AYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
               SCOP domains d1ya7e_ E: automated matches                                                                                                                                                                                                        SCOP domains
               CATH domains 1ya7E00 E:7-233 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhh....eeeeee..eeeeee................eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..........eeeeeeee....eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh........eeeeee.....ee.hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -PROTEASOME_ALPHA_1     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------PROTEASOME_ALPHA_2  PDB: E:23-233 UniProt: 23-233                                                                                                                                                                   PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ya7 E   7 AYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       


Chain F from PDB  Type:PROTEIN  Length:227
 aligned with PSA_THEAC | P25156 from UniProtKB/Swiss-Prot  Length:233

    Alignment length:227
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       
            PSA_THEAC     7 AYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
               SCOP domains d1ya7f_ F: automated matches                                                                                                                                                                                                        SCOP domains
               CATH domains 1ya7F00 F:7-233 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhh....eeeeee..eeeeee................eee....eeeeeeeehhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..........eeeeeeee....eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhh...........eeeeee.....ee.hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -PROTEASOME_ALPHA_1     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------PROTEASOME_ALPHA_2  PDB: F:23-233 UniProt: 23-233                                                                                                                                                                   PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ya7 F   7 AYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       


Chain G from PDB  Type:PROTEIN  Length:227
 aligned with PSA_THEAC | P25156 from UniProtKB/Swiss-Prot  Length:233

    Alignment length:227
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       
            PSA_THEAC     7 AYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
               SCOP domains d1ya7g_ G: automated matches                                                                                                                                                                                                        SCOP domains
               CATH domains 1ya7G00 G:7-233 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                          CATH domains
           Pfam domains (1) -Proteasome_A_N-1ya7G08 Proteasome-1ya7G01 G:31-216                                                                                                                                                               ----------------- Pfam domains (1)
           Pfam domains (2) -Proteasome_A_N-1ya7G09 Proteasome-1ya7G02 G:31-216                                                                                                                                                               ----------------- Pfam domains (2)
           Pfam domains (3) -Proteasome_A_N-1ya7G10 Proteasome-1ya7G03 G:31-216                                                                                                                                                               ----------------- Pfam domains (3)
           Pfam domains (4) -Proteasome_A_N-1ya7G11 Proteasome-1ya7G04 G:31-216                                                                                                                                                               ----------------- Pfam domains (4)
           Pfam domains (5) -Proteasome_A_N-1ya7G12 Proteasome-1ya7G05 G:31-216                                                                                                                                                               ----------------- Pfam domains (5)
           Pfam domains (6) -Proteasome_A_N-1ya7G13 Proteasome-1ya7G06 G:31-216                                                                                                                                                               ----------------- Pfam domains (6)
           Pfam domains (7) -Proteasome_A_N-1ya7G14 Proteasome-1ya7G07 G:31-216                                                                                                                                                               ----------------- Pfam domains (7)
         Sec.struct. author ..............hhhhhhhhhhhhh...eeeeee..eeeeee................eeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..........eeeeeeee....eeeeee.....eee..eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhh...........eeeeee.....ee.hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -PROTEASOME_ALPHA_1     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------PROTEASOME_ALPHA_2  PDB: G:23-233 UniProt: 23-233                                                                                                                                                                   PROSITE (3)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ya7 G   7 AYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKFL 233
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       


Chain H from PDB  Type:PROTEIN  Length:203
 aligned with PSB_THEAC | P28061 from UniProtKB/Swiss-Prot  Length:211

    Alignment length:203
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208   
            PSB_THEAC     9 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLIL 211
               SCOP domains d1ya7h_ H: automated matches                                                                                                                                                                                SCOP domains
               CATH domains 1ya7H00 H:1-203 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeee...eee..eeee.....eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......eeeeeeee...eeeeee.....eeee.eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.......eeeeee...eeee.hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---PROTEASOME_BETA_1  PDB: H:4-51 UniProt: 12-59   -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ya7 H   1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLIL 203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   


Chain I from PDB  Type:PROTEIN  Length:203
 aligned with PSB_THEAC | P28061 from UniProtKB/Swiss-Prot  Length:211

    Alignment length:203
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208   
            PSB_THEAC     9 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLIL 211
               SCOP domains d1ya7i_ I: automated matches                                                                                                                                                                                SCOP domains
               CATH domains 1ya7I00 I:1-203 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeee...eee..eeee.....eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......eeeeeeee...eeeeee.....eeee.eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.......eeeeee...eeee.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---PROTEASOME_BETA_1  PDB: I:4-51 UniProt: 12-59   -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ya7 I   1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLIL 203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   


Chain J from PDB  Type:PROTEIN  Length:203
 aligned with PSB_THEAC | P28061 from UniProtKB/Swiss-Prot  Length:211

    Alignment length:203
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208   
            PSB_THEAC     9 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLIL 211
               SCOP domains d1ya7j_ J: automated matches                                                                                                                                                                                SCOP domains
               CATH domains 1ya7J00 J:1-203 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeee...eee..eeee.....eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......eeeeeeee...eeeeee.....eeee.eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.......eeeeee...eeee.hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---PROTEASOME_BETA_1  PDB: J:4-51 UniProt: 12-59   -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ya7 J   1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLIL 203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   


Chain K from PDB  Type:PROTEIN  Length:203
 aligned with PSB_THEAC | P28061 from UniProtKB/Swiss-Prot  Length:211

    Alignment length:203
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208   
            PSB_THEAC     9 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLIL 211
               SCOP domains d1ya7k_ K: automated matches                                                                                                                                                                                SCOP domains
               CATH domains 1ya7K00 K:1-203 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....eeeee...eee..eeee.....eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......eeeeeeee...eeeeee.....eeee.eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.......eeeeee...eeee.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---PROTEASOME_BETA_1  PDB: K:4-51 UniProt: 12-59   -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ya7 K   1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLIL 203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   


Chain L from PDB  Type:PROTEIN  Length:203
 aligned with PSB_THEAC | P28061 from UniProtKB/Swiss-Prot  Length:211

    Alignment length:203
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208   
            PSB_THEAC     9 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLIL 211
               SCOP domains d1ya7l_ L: automated matches                                                                                                                                                                                SCOP domains
               CATH domains 1ya7L00 L:1-203 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeee...eee..eeee.....eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......eeeeeeee...eeeeee.....eeee.eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.......eeeeee...eeee.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---PROTEASOME_BETA_1  PDB: L:4-51 UniProt: 12-59   -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ya7 L   1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLIL 203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   


Chain M from PDB  Type:PROTEIN  Length:203
 aligned with PSB_THEAC | P28061 from UniProtKB/Swiss-Prot  Length:211

    Alignment length:203
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208   
            PSB_THEAC     9 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLIL 211
               SCOP domains d1ya7m_ M: automated matches                                                                                                                                                                                SCOP domains
               CATH domains 1ya7M00 M:1-203 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eeeeee...eee..eeee.....eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......eeeeeeee...eeeeee.....eeee.eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.......eeeeee...eeee.hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---PROTEASOME_BETA_1  PDB: M:4-51 UniProt: 12-59   -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ya7 M   1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLIL 203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   


Chain N from PDB  Type:PROTEIN  Length:203
 aligned with PSB_THEAC | P28061 from UniProtKB/Swiss-Prot  Length:211

    Alignment length:203
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208   
            PSB_THEAC     9 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLIL 211
               SCOP domains d1ya7n_ N: automated matches                                                                                                                                                                                SCOP domains
               CATH domains 1ya7N00 N:1-203 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                  CATH domains
           Pfam domains (1) Proteasome-1ya7N01 N:1-178                                                                                                                                                        ------------------------- Pfam domains (1)
           Pfam domains (2) Proteasome-1ya7N02 N:1-178                                                                                                                                                        ------------------------- Pfam domains (2)
           Pfam domains (3) Proteasome-1ya7N03 N:1-178                                                                                                                                                        ------------------------- Pfam domains (3)
           Pfam domains (4) Proteasome-1ya7N04 N:1-178                                                                                                                                                        ------------------------- Pfam domains (4)
           Pfam domains (5) Proteasome-1ya7N05 N:1-178                                                                                                                                                        ------------------------- Pfam domains (5)
           Pfam domains (6) Proteasome-1ya7N06 N:1-178                                                                                                                                                        ------------------------- Pfam domains (6)
           Pfam domains (7) Proteasome-1ya7N07 N:1-178                                                                                                                                                        ------------------------- Pfam domains (7)
         Sec.struct. author ..eeeeee..eeeeee...eee..eeee.....eeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh......eeeeeeee...eeeeee.....eeee.eeee..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh.......eeeeee...eeee.hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---PROTEASOME_BETA_1  PDB: N:4-51 UniProt: 12-59   -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ya7 N   1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGLIL 203
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   


Chain O from PDB  Type:PROTEIN  Length:218
 aligned with Q9U8G2_9TRYP | Q9U8G2 from UniProtKB/TrEMBL  Length:231

    Alignment length:228
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223        
         Q9U8G2_9TRYP     4 KRAALIQNLRDSYTETSSFAVIEEWAAGTLQEIEGIAKAAAEAHGTIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLGSVDAESGKTKGGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWKKLIQPRTGSDHMVS 231
               SCOP domains d1ya7o1 O:4-231 Proteasome activator protein PA26                                                                                                                                                                                    SCOP domains
               CATH domains 1ya7O01 O:4-221  [code=1.20.120.180, no name defined]                                                                                                                                                                     ---------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhh----------....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ya7 O   4 KRAALIQNLRDSYTETSSFAVIEEWAAGTLQEIEGIAKAAAEAHGVIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLG----------GGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWKKLIQPRTGSDHMVS 231
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       | -       173       183       193       203       213       223        
                                                                                                                                                                                       161        172                                                           


Chain P from PDB  Type:PROTEIN  Length:218
 aligned with Q9U8G2_9TRYP | Q9U8G2 from UniProtKB/TrEMBL  Length:231

    Alignment length:228
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223        
         Q9U8G2_9TRYP     4 KRAALIQNLRDSYTETSSFAVIEEWAAGTLQEIEGIAKAAAEAHGTIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLGSVDAESGKTKGGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWKKLIQPRTGSDHMVS 231
               SCOP domains d1ya7p_ P: automated matches                                                                                                                                                                                                         SCOP domains
               CATH domains 1ya7P01 P:4-221  [code=1.20.120.180, no name defined]                                                                                                                                                                     ---------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhh----------....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ya7 P   4 KRAALIQNLRDSYTETSSFAVIEEWAAGTLQEIEGIAKAAAEAHGVIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLG----------GGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWKKLIQPRTGSDHMVS 231
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       | -       173       183       193       203       213       223        
                                                                                                                                                                                       161        172                                                           


Chain Q from PDB  Type:PROTEIN  Length:218
 aligned with Q9U8G2_9TRYP | Q9U8G2 from UniProtKB/TrEMBL  Length:231

    Alignment length:228
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223        
         Q9U8G2_9TRYP     4 KRAALIQNLRDSYTETSSFAVIEEWAAGTLQEIEGIAKAAAEAHGTIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLGSVDAESGKTKGGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWKKLIQPRTGSDHMVS 231
               SCOP domains d1ya7q_ Q: automated matches                                                                                                                                                                                                         SCOP domains
               CATH domains 1ya7Q01 Q:4-221  [code=1.20.120.180, no name defined]                                                                                                                                                                     ---------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhh----------....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ya7 Q   4 KRAALIQNLRDSYTETSSFAVIEEWAAGTLQEIEGIAKAAAEAHGVIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLG----------GGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWKKLIQPRTGSDHMVS 231
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       | -       173       183       193       203       213       223        
                                                                                                                                                                                       161        172                                                           


Chain R from PDB  Type:PROTEIN  Length:218
 aligned with Q9U8G2_9TRYP | Q9U8G2 from UniProtKB/TrEMBL  Length:231

    Alignment length:228
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223        
         Q9U8G2_9TRYP     4 KRAALIQNLRDSYTETSSFAVIEEWAAGTLQEIEGIAKAAAEAHGTIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLGSVDAESGKTKGGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWKKLIQPRTGSDHMVS 231
               SCOP domains d1ya7r_ R: automated matches                                                                                                                                                                                                         SCOP domains
               CATH domains 1ya7R01 R:4-221  [code=1.20.120.180, no name defined]                                                                                                                                                                     ---------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhh----------....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ya7 R   4 KRAALIQNLRDSYTETSSFAVIEEWAAGTLQEIEGIAKAAAEAHGVIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLG----------GGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWKKLIQPRTGSDHMVS 231
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       | -       173       183       193       203       213       223        
                                                                                                                                                                                       161        172                                                           


Chain S from PDB  Type:PROTEIN  Length:218
 aligned with Q9U8G2_9TRYP | Q9U8G2 from UniProtKB/TrEMBL  Length:231

    Alignment length:228
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223        
         Q9U8G2_9TRYP     4 KRAALIQNLRDSYTETSSFAVIEEWAAGTLQEIEGIAKAAAEAHGTIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLGSVDAESGKTKGGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWKKLIQPRTGSDHMVS 231
               SCOP domains d1ya7s_ S: automated matches                                                                                                                                                                                                         SCOP domains
               CATH domains 1ya7S01 S:4-221  [code=1.20.120.180, no name defined]                                                                                                                                                                     ---------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhh----------....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ya7 S   4 KRAALIQNLRDSYTETSSFAVIEEWAAGTLQEIEGIAKAAAEAHGVIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLG----------GGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWKKLIQPRTGSDHMVS 231
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       | -       173       183       193       203       213       223        
                                                                                                                                                                                       161        172                                                           


Chain T from PDB  Type:PROTEIN  Length:218
 aligned with Q9U8G2_9TRYP | Q9U8G2 from UniProtKB/TrEMBL  Length:231

    Alignment length:228
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223        
         Q9U8G2_9TRYP     4 KRAALIQNLRDSYTETSSFAVIEEWAAGTLQEIEGIAKAAAEAHGTIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLGSVDAESGKTKGGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWKKLIQPRTGSDHMVS 231
               SCOP domains d1ya7t_ T: automated matches                                                                                                                                                                                                         SCOP domains
               CATH domains 1ya7T01 T:4-221  [code=1.20.120.180, no name defined]                                                                                                                                                                     ---------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhh.----------....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........ee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ya7 T   4 KRAALIQNLRDSYTETSSFAVIEEWAAGTLQEIEGIAKAAAEAHGVIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLG----------GGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWKKLIQPRTGSDHMVS 231
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       | -       173       183       193       203       213       223        
                                                                                                                                                                                       161        172                                                           


Chain U from PDB  Type:PROTEIN  Length:218
 aligned with Q9U8G2_9TRYP | Q9U8G2 from UniProtKB/TrEMBL  Length:231

    Alignment length:228
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223        
         Q9U8G2_9TRYP     4 KRAALIQNLRDSYTETSSFAVIEEWAAGTLQEIEGIAKAAAEAHGTIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLGSVDAESGKTKGGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWKKLIQPRTGSDHMVS 231
               SCOP domains d1ya7u_ U: automated matches                                                                                                                                                                                                         SCOP domains
               CATH domains 1ya7U01 U:4-221  [code=1.20.120.180, no name defined]                                                                                                                                                                     ---------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhh----------....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1ya7 U   4 KRAALIQNLRDSYTETSSFAVIEEWAAGTLQEIEGIAKAAAEAHGVIRNSTYGRAQAEKSPEQLLGVLQRYQDLCHNVYCQAETIRTVIAIRIPEHKEEDNLGVAVQHAVLKIIDELEIKTLGSGEKSGSGGAPTPIGMYALREYLSARSTVEDKLLG----------GGSQSPSLLLELRQIDADFMLKVELATTHLSTMVRAVINAYLLNWKKLIQPRTGSDHMVS 231
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       | -       173       183       193       203       213       223        
                                                                                                                                                                                       161        172
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 21)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 21)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (2, 21)

Asymmetric Unit
(-)
Clan: NTN (93)
(-)
Clan: no clan defined [family: Proteasome_A_N] (20)

(-) Gene Ontology  (15, 27)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G   (PSA_THEAC | P25156)
molecular function
    GO:0004175    endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004298    threonine-type endopeptidase activity    Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
biological process
    GO:0010498    proteasomal protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0051603    proteolysis involved in cellular protein catabolic process    The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
    GO:0006511    ubiquitin-dependent protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0000502    proteasome complex    A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.
    GO:0005839    proteasome core complex    A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
    GO:0019773    proteasome core complex, alpha-subunit complex    The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex. An example of this component is found in Mus musculus.

Chain H,I,J,K,L,M,N   (PSB_THEAC | P28061)
molecular function
    GO:0004175    endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0004298    threonine-type endopeptidase activity    Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
biological process
    GO:0010498    proteasomal protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0051603    proteolysis involved in cellular protein catabolic process    The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0000502    proteasome complex    A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.
    GO:0005839    proteasome core complex    A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
    GO:0019774    proteasome core complex, beta-subunit complex    The proteasome core subcomplex that constitutes the two inner rings of the proteasome core complex. An example of this component is found in Mus musculus.

Chain O,P,Q,R,S,T,U   (Q9U8G2_9TRYP | Q9U8G2)
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0061136    regulation of proteasomal protein catabolic process    Any process that modulates the rate, frequency, or extent of the chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
cellular component
    GO:0008537    proteasome activator complex    A multisubunit complex that activates the hydrolysis of small nonubiquitinated peptides by binding to the proteasome core complex.
    GO:0000502    proteasome complex    A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1ya7)
 
Biological Unit
  Complete Structure
    Biological Unit 1  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1ya7
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PSA_THEAC | P25156
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  PSB_THEAC | P28061
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  Q9U8G2_9TRYP | Q9U8G2
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  3.4.25.1
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  PSA_THEAC | P25156
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  PSB_THEAC | P28061
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  Q9U8G2_9TRYP | Q9U8G2
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PSA_THEAC | P25156: 1pma 1yar 1yau 2ku1 2ku2 3c91 3c92 3ipm 3j9i 3jrm 3jse 3jtl 5vy3 5vy4
        PSB_THEAC | P28061: 1pma 1yar 1yau 3c91 3c92 3ipm 3j9i 3jrm 3jse 3jtl 5vy3 5vy4
UniProtKB/TrEMBL
        Q9U8G2_9TRYP | Q9U8G2: 1fnt 1yar 1yau 1z7q 3jrm 3jse 3jtl

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1YA7)