1Y7O - JenaLib

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Asymmetric Unit (Jmol Viewer)

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Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   THE STRUCTURE OF STREPTOCOCCUS PNEUMONIAE A153P CLPP

Authors :   M. S. Kimber, A. Gribun, R. Ching, R. Sprangers, K. M. Fiebig, W. A. Houry

Date :   09 Dec 04 (Deposition) - 08 Feb 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.51

Chains :   Asym. Unit : A,B,C,D,E,F,G
Biol. Unit 1: A,B,C,D,E,F,G  (2x)
Biol. Unit 2: A,B,C,D,E,F,G  (1x)

Keywords :   Protease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Gribun, M. S. Kimber, R. Ching, R. Sprangers, K. M. Fiebig, W. A. Hour
The Clpp Double Ring Tetradecameric Protease Exhibits Plastic Ring-Ring Interactions, And The N Termini Of Its Subunits Form Flexible Loops That Are Essential For Clpxp And Clpap Complex Formation.
J. Biol. Chem. V. 280 16185 2005
PubMed-ID: 15701650 | Reference-DOI: 10.1074/JBC.M414124200

Molecule 1 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT
	Chains	:	A, B, C, D, E, F, G
	EC Number	:	3.4.21.92
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21(DE3) GOLD
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	CASEINOLYTIC PROTEASE
	Gene	:	CLPP
	Mutation	:	YES
	Organism Scientific	:	STREPTOCOCCUS PNEUMONIAE
	Organism Taxid	:	1313
	Synonym	:	ENDOPEPTIDASE CLP

		1	2	3	4	5	6	7
Asymmetric Unit	:	A	B	C	D	E	F	G
Biological Unit 1 (2x)	:	A	B	C	D	E	F	G
Biological Unit 2 (1x)	:	A	B	C	D	E	F	G

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 92)

No.	Name	Count	Type	Full Name
1	CA	8	Ligand/Ion	CALCIUM ION
2	MSE	84	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 168)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	MSE	168	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 84)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	MSE	84	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MSE A:79 , ILE A:82 , ALA A:84	BINDING SITE FOR RESIDUE CA A 1001
2	AC2	SOFTWARE	MSE C:79 , ILE C:82 , ALA C:84 , SER D:194	BINDING SITE FOR RESIDUE CA C 1002
3	AC3	SOFTWARE	GLU A:188 , ASP F:85	BINDING SITE FOR RESIDUE CA F 1003
4	AC4	SOFTWARE	MSE B:79 , ILE B:82 , ALA B:84 , HOH B:1032	BINDING SITE FOR RESIDUE CA B 1004
5	AC5	SOFTWARE	MSE G:79 , ILE G:82 , LYS G:83 , ALA G:84 , HOH G:1011	BINDING SITE FOR RESIDUE CA G 1005
6	AC6	SOFTWARE	ALA A:51 , GLU C:156	BINDING SITE FOR RESIDUE CA C 1006
7	AC7	SOFTWARE	MSE E:79 , ILE E:82 , ALA E:84	BINDING SITE FOR RESIDUE CA E 1007
8	AC8	SOFTWARE	MSE F:79 , ILE F:82 , ALA F:84 , HOH F:1010	BINDING SITE FOR RESIDUE CA F 1008

(no "SS Bond" information available for 1Y7O)

(no "Cis Peptide Bond" information available for 1Y7O)

(no "SAP(SNP)/Variant" information available for 1Y7O)

Asymmetric Unit (2, 14)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CLP_PROTEASE_SER	PS00381	Endopeptidase Clp serine active site.	CLPP_STRR6	88-99	7	A:88-99 B:88-99 C:88-99 D:88-99 E:88-99 F:88-99 G:88-99
2	CLP_PROTEASE_HIS	PS00382	Endopeptidase Clp histidine active site.	CLPP_STRR6	110-123	7	A:110-123 B:110-123 C:110-123 D:110-123 E:110-123 F:110-123 G:110-123

Biological Unit 1 (2, 28)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CLP_PROTEASE_SER	PS00381	Endopeptidase Clp serine active site.	CLPP_STRR6	88-99	14	A:88-99 B:88-99 C:88-99 D:88-99 E:88-99 F:88-99 G:88-99
2	CLP_PROTEASE_HIS	PS00382	Endopeptidase Clp histidine active site.	CLPP_STRR6	110-123	14	A:110-123 B:110-123 C:110-123 D:110-123 E:110-123 F:110-123 G:110-123

Biological Unit 2 (2, 14)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CLP_PROTEASE_SER	PS00381	Endopeptidase Clp serine active site.	CLPP_STRR6	88-99	7	A:88-99 B:88-99 C:88-99 D:88-99 E:88-99 F:88-99 G:88-99
2	CLP_PROTEASE_HIS	PS00382	Endopeptidase Clp histidine active site.	CLPP_STRR6	110-123	7	A:110-123 B:110-123 C:110-123 D:110-123 E:110-123 F:110-123 G:110-123

(no "Exon" information available for 1Y7O)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:171
 aligned with CLPP_STRR6 | P63788 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:192
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191  
           CLPP_STRR6     2 IPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANN 193
               SCOP domains d1y7oa       1 A:2-193 Clp protease, ClpP subunit                                                                                                                                                SCOP domains
               CATH domains 1y7oA0       0 A:2-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee..-------.eehhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh......eee....eee.....--------------hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhh...ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H---------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1y7o A   2 IPVVIE-------SYDIYSRLLKDRIImLTGPVEDNmANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTmNFIKADVQTIVmGmAASmGTVIASSGAKGKRFmLPNAEYmIHQPm--------------APEHLLKTRNTLEKILAENSGQSmEKVHADAERDNWmSAQETLEYGFIDEImANN 193
                                 |   -   |    21       |31      | 41        51        61        71       |81        91 |   | 101       111|      121  |      -       141       151       161|      171   |   181       191  
                                 7      15            29-MSE   38-MSE                                   79-MSE      91-MSE |            112-MSE  |    |            139                    162-MSE      175-MSE        190-MSE
                                                                                                                      93-MSE                   119-MSE|                                                                     
                                                                                                                          97-MSE                    124-MSE

Chain B from PDB  Type:PROTEIN  Length:178
 aligned with CLPP_STRR6 | P63788 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:194
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190    
           CLPP_STRR6     1 MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANNS 194
               SCOP domains d1y7ob_ B   : Clp protease, ClpP subunit                                                                                                                                                           SCOP domains
               CATH domains 1y7oB00 B   :1-194 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..---.eeeehhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee.....-------------.hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhh...ee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H----------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y7o B   1 MIPVVIEQT---ERSYDIYSRLLKDRIImLTGPVEDNmANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTmNFIKADVQTIVmGmAASmGTVIASSGAKGKRFmLPNAEYmIHQPm-------------IAPEHLLKTRNTLEKILAENSGQSmEKVHADAERDNWmSAQETLEYGFIDEImANNS 194
                                    |-  |     20        30       |40        50        60        70        80        90| |   |100       110 |     120   |     -       140       150       160 |     170    |  180       190    
                                    9  13              29-MSE   38-MSE                                   79-MSE      91-MSE |            112-MSE  |    |           138                     162-MSE      175-MSE        190-MSE
                                                                                                                       93-MSE                   119-MSE|                                                                      
                                                                                                                           97-MSE                    124-MSE

Chain C from PDB  Type:PROTEIN  Length:176
 aligned with CLPP_STRR6 | P63788 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:195
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190     
           CLPP_STRR6     1 MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANNSL 195
               SCOP domains d1y7oc_      C: Clp protease, ClpP subunit                                                                                                                                                          SCOP domains
               CATH domains 1y7oC00      C:1-195 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........-----...hhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhh......eee....eee.....--------------hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh....eehhhhhhhh...ee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y7o C   1 MIPVVIEQ-----RSYDIYSRLLKDRIImLTGPVEDNmANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTmNFIKADVQTIVmGmAASmGTVIASSGAKGKRFmLPNAEYmIHQPm--------------APEHLLKTRNTLEKILAENSGQSmEKVHADAERDNWmSAQETLEYGFIDEImANNSL 195
                                   | -   |    20        30       |40        50        60        70        80        90| |   |100       110 |     120   |     -       140       150       160 |     170    |  180       190     
                                   8    14             29-MSE   38-MSE                                   79-MSE      91-MSE |            112-MSE  |    |            139                    162-MSE      175-MSE        190-MSE 
                                                                                                                       93-MSE                   119-MSE|                                                                       
                                                                                                                           97-MSE                    124-MSE

Chain D from PDB  Type:PROTEIN  Length:178
 aligned with CLPP_STRR6 | P63788 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:194
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190    
           CLPP_STRR6     1 MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANNS 194
               SCOP domains d1y7od_ D:   Clp protease, ClpP subunit                                                                                                                                                            SCOP domains
               CATH domains 1y7oD00 D:  1-194 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...--.eeeehhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee.....--------------hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhh....ee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H----------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y7o D   1 MIPVVIEQTS--ERSYDIYSRLLKDRIImLTGPVEDNmANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTmNFIKADVQTIVmGmAASmGTVIASSGAKGKRFmLPNAEYmIHQPm--------------APEHLLKTRNTLEKILAENSGQSmEKVHADAERDNWmSAQETLEYGFIDEImANNS 194
                                    10  |     20        30       |40        50        60        70        80        90| |   |100       110 |     120   |     -       140       150       160 |     170    |  180       190    
                                    10 13              29-MSE   38-MSE                                   79-MSE      91-MSE |            112-MSE  |    |            139                    162-MSE      175-MSE        190-MSE
                                                                                                                       93-MSE                   119-MSE|                                                                      
                                                                                                                           97-MSE                    124-MSE

Chain E from PDB  Type:PROTEIN  Length:174
 aligned with CLPP_STRR6 | P63788 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:194
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190    
           CLPP_STRR6     1 MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANNS 194
               SCOP domains d1y7oe_       E: Clp protease, ClpP subunit                                                                                                                                                        SCOP domains
               CATH domains 1y7oE00       E:1-194 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee..------..eehhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee.....--------------hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhh...ee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H----------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y7o E   1 MIPVVIE------RSYDIYSRLLKDRIImLTGPVEDNmANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTmNFIKADVQTIVmGmAASmGTVIASSGAKGKRFmLPNAEYmIHQPm--------------APEHLLKTRNTLEKILAENSGQSmEKVHADAERDNWmSAQETLEYGFIDEImANNS 194
                                  |  -   |    20        30       |40        50        60        70        80        90| |   |100       110 |     120   |     -       140       150       160 |     170    |  180       190    
                                  7     14             29-MSE   38-MSE                                   79-MSE      91-MSE |            112-MSE  |    |            139                    162-MSE      175-MSE        190-MSE
                                                                                                                       93-MSE                   119-MSE|                                                                      
                                                                                                                           97-MSE                    124-MSE

Chain F from PDB  Type:PROTEIN  Length:173
 aligned with CLPP_STRR6 | P63788 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:195
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190     
           CLPP_STRR6     1 MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANNSL 195
               SCOP domains d1y7of        _ F: Clp protease, ClpP subunit                                                                                                                                                       SCOP domains
               CATH domains 1y7oF0        0 F:1-195 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......--------..hhhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee.....--------------hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhh...ee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y7o F   1 MIPVVI--------SYDIYSRLLKDRIImLTGPVEDNmANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTmNFIKADVQTIVmGmAASmGTVIASSGAKGKRFmLPNAEYmIHQPm--------------APEHLLKTRNTLEKILAENSGQSmEKVHADAERDNWmSAQETLEYGFIDEImANNSL 195
                                 |   -    |   20        30       |40        50        60        70        80        90| |   |100       110 |     120   |     -       140       150       160 |     170    |  180       190     
                                 6       15            29-MSE   38-MSE                                   79-MSE      91-MSE |            112-MSE  |    |            139                    162-MSE      175-MSE        190-MSE 
                                                                                                                       93-MSE                   119-MSE|                                                                       
                                                                                                                           97-MSE                    124-MSE

Chain G from PDB  Type:PROTEIN  Length:177
 aligned with CLPP_STRR6 | P63788 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:193
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191   
           CLPP_STRR6     2 IPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANNS 194
               SCOP domains d1y7og_    G: Clp protease, ClpP subunit                                                                                                                                                          SCOP domains
               CATH domains 1y7oG00    G:2-194 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                       CATH domains
           Pfam domains (1) --------   CLP_protease-1y7oG01 G:13-193                                                                                                                                                        - Pfam domains (1)
           Pfam domains (2) --------   CLP_protease-1y7oG02 G:13-193                                                                                                                                                        - Pfam domains (2)
           Pfam domains (3) --------   CLP_protease-1y7oG03 G:13-193                                                                                                                                                        - Pfam domains (3)
           Pfam domains (4) --------   CLP_protease-1y7oG04 G:13-193                                                                                                                                                        - Pfam domains (4)
           Pfam domains (5) --------   CLP_protease-1y7oG05 G:13-193                                                                                                                                                        - Pfam domains (5)
           Pfam domains (6) --------   CLP_protease-1y7oG06 G:13-193                                                                                                                                                        - Pfam domains (6)
           Pfam domains (7) --------   CLP_protease-1y7oG07 G:13-193                                                                                                                                                        - Pfam domains (7)
         Sec.struct. author ..eeee..---.eeeehhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhhhh.....eee....eee.....-------------.hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh......hhhhhhhhh...ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H----------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1y7o G   2 IPVVIEQT---ERSYDIYSRLLKDRIImLTGPVEDNmANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTmNFIKADVQTIVmGmAASmGTVIASSGAKGKRFmLPNAEYmIHQPm-------------IAPEHLLKTRNTLEKILAENSGQSmEKVHADAERDNWmSAQETLEYGFIDEImANNS 194
                                   | - |      21       |31      | 41        51        61        71       |81        91 |   | 101       111|      121  |      -      |141       151       161|      171   |   181       191   
                                   9  13              29-MSE   38-MSE                                   79-MSE      91-MSE |            112-MSE  |    |           138                     162-MSE      175-MSE        190-MSE
                                                                                                                      93-MSE                   119-MSE|                                                                      
                                                                                                                          97-MSE                    124-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: ClpP/crotonase (207)

Superfamily: ClpP/crotonase (207)

Family: Clp protease, ClpP subunit (31)

Protein domain: Clp protease, ClpP subunit (15)

Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313] (1)

1a	d1y7oa1	A:2-193
1b	d1y7ob_	B:
1c	d1y7oc_	C:
1d	d1y7od_	D:
1e	d1y7oe_	E:
1f	d1y7of_	F:
1g	d1y7og_	G:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: 2-enoyl-CoA Hydratase; Chain A, domain 1 (89)

Homologous Superfamily: 2-enoyl-CoA Hydratase; Chain A, domain 1 (89)

Streptococcus pneumoniae. Organism_taxid: 1313. (1)

1a	1y7oB00	B:1-194
1b	1y7oD00	D:1-194
1c	1y7oG00	G:2-194
1d	1y7oC00	C:1-195
1e	1y7oE00	E:1-194
1f	1y7oF00	F:1-195
1g	1y7oA00	A:2-193

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: ClpP_crotonase (88)

Family: CLP_protease (18)

Streptococcus pneumoniae (strain ATCC BAA-255 / R6) (1)

1a	CLP_protease-1y7oG01	G:13-193
1b	CLP_protease-1y7oG02	G:13-193
1c	CLP_protease-1y7oG03	G:13-193
1d	CLP_protease-1y7oG04	G:13-193
1e	CLP_protease-1y7oG05	G:13-193
1f	CLP_protease-1y7oG06	G:13-193
1g	CLP_protease-1y7oG07	G:13-193

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G (CLPP_STRR6 | P63788)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
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	Cis Peptide Bonds
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	1y7o
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	CLPP_STRR6 \| P63788
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	3.4.21.92
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	CLPP_STRR6 \| P63788
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(no "Entries Sharing at Least One Protein Chain" available for 1Y7O)

(no "Related Entries Specified in the PDB File" available for 1Y7O)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 92)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 14)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 7)

CATH Domains (1, 7)

Pfam Domains (1, 7)

Gene Ontology (6, 6)

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