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1Y7O
Asym. Unit
Info
Asym.Unit (211 KB)
Biol.Unit 1 (385 KB)
Biol.Unit 2 (195 KB)
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(1)
Title
:
THE STRUCTURE OF STREPTOCOCCUS PNEUMONIAE A153P CLPP
Authors
:
M. S. Kimber, A. Gribun, R. Ching, R. Sprangers, K. M. Fiebig, W. A. Houry
Date
:
09 Dec 04 (Deposition) - 08 Feb 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.51
Chains
:
Asym. Unit : A,B,C,D,E,F,G
Biol. Unit 1: A,B,C,D,E,F,G (2x)
Biol. Unit 2: A,B,C,D,E,F,G (1x)
Keywords
:
Protease, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Gribun, M. S. Kimber, R. Ching, R. Sprangers, K. M. Fiebig, W. A. Hour
The Clpp Double Ring Tetradecameric Protease Exhibits Plastic Ring-Ring Interactions, And The N Termini Of Its Subunits Form Flexible Loops That Are Essential For Clpxp And Clpap Complex Formation.
J. Biol. Chem. V. 280 16185 2005
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Hetero Components
(2, 92)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2ap: SELENOMETHIONINE (MSEap)
2aq: SELENOMETHIONINE (MSEaq)
2ar: SELENOMETHIONINE (MSEar)
2as: SELENOMETHIONINE (MSEas)
2at: SELENOMETHIONINE (MSEat)
2au: SELENOMETHIONINE (MSEau)
2av: SELENOMETHIONINE (MSEav)
2aw: SELENOMETHIONINE (MSEaw)
2ax: SELENOMETHIONINE (MSEax)
2ay: SELENOMETHIONINE (MSEay)
2az: SELENOMETHIONINE (MSEaz)
2b: SELENOMETHIONINE (MSEb)
2ba: SELENOMETHIONINE (MSEba)
2bb: SELENOMETHIONINE (MSEbb)
2bc: SELENOMETHIONINE (MSEbc)
2bd: SELENOMETHIONINE (MSEbd)
2be: SELENOMETHIONINE (MSEbe)
2bf: SELENOMETHIONINE (MSEbf)
2bg: SELENOMETHIONINE (MSEbg)
2bh: SELENOMETHIONINE (MSEbh)
2bi: SELENOMETHIONINE (MSEbi)
2bj: SELENOMETHIONINE (MSEbj)
2bk: SELENOMETHIONINE (MSEbk)
2bl: SELENOMETHIONINE (MSEbl)
2bm: SELENOMETHIONINE (MSEbm)
2bn: SELENOMETHIONINE (MSEbn)
2bo: SELENOMETHIONINE (MSEbo)
2bp: SELENOMETHIONINE (MSEbp)
2bq: SELENOMETHIONINE (MSEbq)
2br: SELENOMETHIONINE (MSEbr)
2bs: SELENOMETHIONINE (MSEbs)
2bt: SELENOMETHIONINE (MSEbt)
2bu: SELENOMETHIONINE (MSEbu)
2bv: SELENOMETHIONINE (MSEbv)
2bw: SELENOMETHIONINE (MSEbw)
2bx: SELENOMETHIONINE (MSEbx)
2by: SELENOMETHIONINE (MSEby)
2bz: SELENOMETHIONINE (MSEbz)
2c: SELENOMETHIONINE (MSEc)
2ca: SELENOMETHIONINE (MSEca)
2cb: SELENOMETHIONINE (MSEcb)
2cc: SELENOMETHIONINE (MSEcc)
2cd: SELENOMETHIONINE (MSEcd)
2ce: SELENOMETHIONINE (MSEce)
2cf: SELENOMETHIONINE (MSEcf)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
MSE
84
Mod. Amino Acid
SELENOMETHIONINE
[
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]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MSE A:79 , ILE A:82 , ALA A:84
BINDING SITE FOR RESIDUE CA A 1001
2
AC2
SOFTWARE
MSE C:79 , ILE C:82 , ALA C:84 , SER D:194
BINDING SITE FOR RESIDUE CA C 1002
3
AC3
SOFTWARE
GLU A:188 , ASP F:85
BINDING SITE FOR RESIDUE CA F 1003
4
AC4
SOFTWARE
MSE B:79 , ILE B:82 , ALA B:84 , HOH B:1032
BINDING SITE FOR RESIDUE CA B 1004
5
AC5
SOFTWARE
MSE G:79 , ILE G:82 , LYS G:83 , ALA G:84 , HOH G:1011
BINDING SITE FOR RESIDUE CA G 1005
6
AC6
SOFTWARE
ALA A:51 , GLU C:156
BINDING SITE FOR RESIDUE CA C 1006
7
AC7
SOFTWARE
MSE E:79 , ILE E:82 , ALA E:84
BINDING SITE FOR RESIDUE CA E 1007
8
AC8
SOFTWARE
MSE F:79 , ILE F:82 , ALA F:84 , HOH F:1010
BINDING SITE FOR RESIDUE CA F 1008
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 14)
Info
All PROSITE Patterns/Profiles
1: CLP_PROTEASE_SER (A:88-99,B:88-99,C:88-99,D:88-99,E:...)
2: CLP_PROTEASE_HIS (A:110-123,B:110-123,C:110-123,D:11...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CLP_PROTEASE_SER
PS00381
Endopeptidase Clp serine active site.
CLPP_STRR6
88-99
7
A:88-99
B:88-99
C:88-99
D:88-99
E:88-99
F:88-99
G:88-99
2
CLP_PROTEASE_HIS
PS00382
Endopeptidase Clp histidine active site.
CLPP_STRR6
110-123
7
A:110-123
B:110-123
C:110-123
D:110-123
E:110-123
F:110-123
G:110-123
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 7)
Info
All SCOP Domains
1a: SCOP_d1y7oa1 (A:2-193)
1b: SCOP_d1y7ob_ (B:)
1c: SCOP_d1y7oc_ (C:)
1d: SCOP_d1y7od_ (D:)
1e: SCOP_d1y7oe_ (E:)
1f: SCOP_d1y7of_ (F:)
1g: SCOP_d1y7og_ (G:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ClpP/crotonase
(207)
Superfamily
:
ClpP/crotonase
(207)
Family
:
Clp protease, ClpP subunit
(31)
Protein domain
:
Clp protease, ClpP subunit
(15)
Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
(1)
1a
d1y7oa1
A:2-193
1b
d1y7ob_
B:
1c
d1y7oc_
C:
1d
d1y7od_
D:
1e
d1y7oe_
E:
1f
d1y7of_
F:
1g
d1y7og_
G:
[
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]
CATH Domains
(1, 7)
Info
all CATH domains
1a: CATH_1y7oB00 (B:1-194)
1b: CATH_1y7oD00 (D:1-194)
1c: CATH_1y7oG00 (G:2-194)
1d: CATH_1y7oC00 (C:1-195)
1e: CATH_1y7oE00 (E:1-194)
1f: CATH_1y7oF00 (F:1-195)
1g: CATH_1y7oA00 (A:2-193)
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Classes
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Architectures
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Homologous Superfamily
:
2-enoyl-CoA Hydratase; Chain A, domain 1
(89)
Streptococcus pneumoniae. Organism_taxid: 1313.
(1)
1a
1y7oB00
B:1-194
1b
1y7oD00
D:1-194
1c
1y7oG00
G:2-194
1d
1y7oC00
C:1-195
1e
1y7oE00
E:1-194
1f
1y7oF00
F:1-195
1g
1y7oA00
A:2-193
[
close CATH info
]
Pfam Domains
(1, 7)
Info
all PFAM domains
1a: PFAM_CLP_protease_1y7oG01 (G:13-193)
1b: PFAM_CLP_protease_1y7oG02 (G:13-193)
1c: PFAM_CLP_protease_1y7oG03 (G:13-193)
1d: PFAM_CLP_protease_1y7oG04 (G:13-193)
1e: PFAM_CLP_protease_1y7oG05 (G:13-193)
1f: PFAM_CLP_protease_1y7oG06 (G:13-193)
1g: PFAM_CLP_protease_1y7oG07 (G:13-193)
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Clans
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)
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(
)
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)
Clan
:
ClpP_crotonase
(88)
Family
:
CLP_protease
(18)
Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
(1)
1a
CLP_protease-1y7oG01
G:13-193
1b
CLP_protease-1y7oG02
G:13-193
1c
CLP_protease-1y7oG03
G:13-193
1d
CLP_protease-1y7oG04
G:13-193
1e
CLP_protease-1y7oG05
G:13-193
1f
CLP_protease-1y7oG06
G:13-193
1g
CLP_protease-1y7oG07
G:13-193
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