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(-) Description

Title :  ATPGS BOUND E. COLI CLAMP LOADER COMPLEX
 
Authors :  S. L. Kazmirski, M. Podobnik, T. F. Weitze, M. O'Donnell, J. Kuriyan
Date :  05 Nov 04  (Deposition) - 07 Dec 04  (Release) - 15 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.45
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Keywords :  Aaa+ Atpase Clamp Loader, Gamma Complex, Dna Polymerase Iii, Dna Replication, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. L. Kazmirski, M. Podobnik, T. F. Weitze, M. O'Donnell, J. Kuriyan
Structural Analysis Of The Inactive State Of The Escherichi Coli Dna Polymerase Clamp-Loader Complex
Proc. Natl. Acad. Sci. Usa V. 101 16750 2004
PubMed-ID: 15556993  |  Reference-DOI: 10.1073/PNAS.0407904101

(-) Compounds

Molecule 1 - DNA POLYMERASE III, DELTA SUBUNIT
    Chains: A, F
    EC Number: 2.7.7.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HOLA
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
 
Molecule 2 - DNA POLYMERASE III SUBUNIT GAMMA
    Chains: B, C, D, G, H, I
    EC Number: 2.7.7.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: DNAX, DNAZ, DNAZX
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
 
Molecule 3 - DNA POLYMERASE III, DELTA PRIME SUBUNIT
    Chains: E, J
    EC Number: 2.7.7.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HOLB
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 36)

Asymmetric Unit (4, 36)
No.NameCountTypeFull Name
1AGS4Ligand/IonPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2MSE22Mod. Amino AcidSELENOMETHIONINE
3PO42Ligand/IonPHOSPHATE ION
4ZN8Ligand/IonZINC ION
Biological Unit 1 (3, 14)
No.NameCountTypeFull Name
1AGS2Ligand/IonPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2MSE11Mod. Amino AcidSELENOMETHIONINE
3PO41Ligand/IonPHOSPHATE ION
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (3, 14)
No.NameCountTypeFull Name
1AGS2Ligand/IonPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2MSE11Mod. Amino AcidSELENOMETHIONINE
3PO41Ligand/IonPHOSPHATE ION
4ZN-1Ligand/IonZINC ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS C:64 , CYS C:73 , CYS C:76 , CYS C:79BINDING SITE FOR RESIDUE ZN C 401
02AC2SOFTWARECYS D:64 , CYS D:73 , GLY D:74 , CYS D:76 , CYS D:79BINDING SITE FOR RESIDUE ZN D 402
03AC3SOFTWARECYS B:64 , CYS B:73 , GLY B:74 , CYS B:76 , CYS B:79BINDING SITE FOR RESIDUE ZN B 403
04AC4SOFTWARECYS E:50 , SER E:58 , CYS E:59 , GLY E:60 , CYS E:62 , CYS E:65BINDING SITE FOR RESIDUE ZN E 404
05AC5SOFTWARECYS H:64 , THR H:66 , CYS H:73 , CYS H:76 , CYS H:79BINDING SITE FOR RESIDUE ZN H 405
06AC6SOFTWARECYS I:64 , CYS I:73 , GLY I:74 , CYS I:76 , CYS I:79BINDING SITE FOR RESIDUE ZN I 406
07AC7SOFTWARECYS G:64 , CYS G:73 , GLY G:74 , CYS G:76 , CYS G:79BINDING SITE FOR RESIDUE ZN G 407
08AC8SOFTWARECYS J:50 , CYS J:59 , CYS J:62 , CYS J:65BINDING SITE FOR RESIDUE ZN J 408
09AC9SOFTWARETHR C:46 , ARG C:47 , GLY C:48 , VAL C:49 , LYS C:51 , THR C:52 , ARG C:215BINDING SITE FOR RESIDUE PO4 C 1300
10BC1SOFTWARETHR H:46 , ARG H:47 , GLY H:48 , VAL H:49 , LYS H:51 , THR H:52 , ARG H:215BINDING SITE FOR RESIDUE PO4 H 1400
11BC2SOFTWAREALA D:7 , ARG D:11 , PRO D:12 , VAL D:19 , ARG D:47 , GLY D:48 , VAL D:49 , GLY D:50 , LYS D:51 , THR D:52 , SER D:53 , THR D:157 , LEU D:214 , ARG D:215 , LEU D:218BINDING SITE FOR RESIDUE AGS D 801
12BC3SOFTWAREALA B:7 , ARG B:11 , VAL B:19 , THR B:46 , ARG B:47 , GLY B:48 , VAL B:49 , GLY B:50 , LYS B:51 , THR B:52 , SER B:53 , THR B:157 , LEU B:214 , ARG B:215BINDING SITE FOR RESIDUE AGS B 802
13BC4SOFTWAREALA I:7 , TRP I:10 , ARG I:11 , PRO I:12 , VAL I:19 , ARG I:47 , GLY I:48 , VAL I:49 , GLY I:50 , LYS I:51 , THR I:52 , SER I:53 , LEU I:178 , LEU I:214 , ARG I:215BINDING SITE FOR RESIDUE AGS I 803
14BC5SOFTWAREALA G:7 , TRP G:10 , ARG G:11 , PRO G:12 , VAL G:18 , VAL G:19 , ARG G:47 , GLY G:48 , VAL G:49 , GLY G:50 , LYS G:51 , THR G:52 , SER G:53 , LEU G:214 , ARG G:215 , LEU G:218BINDING SITE FOR RESIDUE AGS G 804

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1D:76 -D:79

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1XXH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XXH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XXH)

(-) Exons   (0, 0)

(no "Exon" information available for 1XXH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:338
 aligned with HOLA_ECOLI | P28630 from UniProtKB/Swiss-Prot  Length:343

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
           HOLA_ECOLI     1 MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHKPLAD 338
               SCOP domains d1xxha2 A:1-211 delta subunit of DNA polymerase III, N-domain                                                                                                                                                      d1xxha1 A:212-338 delta subunit                                                                                                 SCOP domains
               CATH domains -1xxhA01 A:2-142 P-loop containing nucleotide triphosphate hydrolases                                                                         1xxhA02 A:143-213  [code=1.10.8.60, no name defined]                   1xxhA03 A:214-338  [code=1.20.272.20, no name defined]                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhhh.......eeee.....hhhhhhhhhhh........eeeee........hhhhhhhhh........eeeeee.....hhhhhhhhhhhh...eeeee......hhhhhhhhhhhhh..eehhhhhhhhhhh...hhhhhhhhhhhhhhhh...eehhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xxh A   1 mIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAmSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLmGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGmmGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHKPLAD 338
                            |       10        20        30        40        50        60        70|       80        90       100       110       120       130       140       150       160       170       180       190       200       210       220  |    230       240       250       260       270       280    || 290       300       310       320       330        
                            1-MSE                                                                71-MSE                                                                                                                                                 223-MSE                                                       285-MSE                                                 
                                                                                                                                                                                                                                                                                                                       286-MSE                                                


Chain B from PDB  Type:PROTEIN  Length:364
 aligned with DPO3X_ECOLI | P06710 from UniProtKB/Swiss-Prot  Length:643

    Alignment length:364
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
          DPO3X_ECOLI     5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEP 368
               SCOP domains d1xxhb2 B:5-242 gamma subunit of DNA polymerase III, N-domain                                                                                                                                                                                 d1xxhb1 B:243-368 gamma subunit                                                                                                SCOP domains
               CATH domains 1xxhB01 B:5-178 P-loop containing nucleotide triphosphate hydrolases                                                                                                          1xxhB02 B:179-241  [code=1.10.8.60, no name defined]           1xxhB03 B:242-363  [code=1.20.272.10, no name defined]                                                                    ----- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh...hhhhh..hhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhh............hhhhhhhhhh....eeeee.......hhhhhhhhh...........eeeeehhhhhhhhhhhhhhhhhhh......eeeee......hhhhhhh.eeee....hhhhhhhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhhhh.....hhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh......hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xxh B   5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEP 368
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    


Chain C from PDB  Type:PROTEIN  Length:366
 aligned with DPO3X_ECOLI | P06710 from UniProtKB/Swiss-Prot  Length:643

    Alignment length:366
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362      
          DPO3X_ECOLI     3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEP 368
               SCOP domains --d1xxhc2 C:5-242 gamma subunit of DNA polymerase III, N-domain                                                                                                                                                                                 d1xxhc1 C:243-368 gamma subunit                                                                                                SCOP domains
               CATH domains 1xxhC01 C:3-178 P-loop containing nucleotide triphosphate hydrolases                                                                                                            1xxhC02 C:179-241  [code=1.10.8.60, no name defined]           1xxhC03 C:242-368  [code=1.20.272.10, no name defined]                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh...........hhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhh...............hhhhhhhh......eeeee.....hhhhhhhhhhh..........eeeeee.....hhhhhhhhhhhhhh....eeeeeee......hhhhhh..........hhhhhhhhhhhhhhh...eehhhhhhhhhhhh..hhhhhhhhhhhhhhhh..eehhhhhhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1xxh C   3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEP 368
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362      


Chain D from PDB  Type:PROTEIN  Length:364
 aligned with DPO3X_ECOLI | P06710 from UniProtKB/Swiss-Prot  Length:643

    Alignment length:364
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
          DPO3X_ECOLI     5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEP 368
               SCOP domains d1xxhd2 D:5-242 gamma subunit of DNA polymerase III, N-domain                                                                                                                                                                                 d1xxhd1 D:243-368 gamma subunit                                                                                                SCOP domains
               CATH domains 1xxhD01 D:5-178 P-loop containing nucleotide triphosphate hydrolases                                                                                                          1xxhD02 D:179-241  [code=1.10.8.60, no name defined]           1xxhD03 D:242-368  [code=1.20.272.10, no name defined]                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh...hhhhh..hhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhh............hhhhhhhhhh....eeeee.....hhhhhhhhhhh..........eeeeee.hhhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhheeeee...hhhhhhhhhhhhhhhh..eehhhhhhhhhhhh..hhhhhhhhhhhhhhhh..eehhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xxh D   5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEP 368
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    


Chain E from PDB  Type:PROTEIN  Length:334
 aligned with HOLB_ECOLI | P28631 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
           HOLB_ECOLI     1 MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQLMSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL 334
               SCOP domains d1xxhe2 E:1-207 delta prime subunit of DNA polymerase III, N-domain                                                                                                                                            d1xxhe1 E:208-334 delta prime subunit                                                                                           SCOP domains
               CATH domains -1xxhE01 E:2-167 P-loop containing nucleotide triphosphate hydrolases                                                                                                  1xxhE02 E:168-207                       1xxhE03 E:208-334  [code=1.20.272.10, no name defined]                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhh............hhhhhhhhhh....eee..........hhhhhhhhhhhhhh.......eeee..hhhhhhhhhhhhhhhhhhh....eeeeeee......hhhhhh..eeee....hhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xxh E   1 mRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGmGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLmQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTmSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLmDALKRHHGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQLmSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL 334
                            |       10        20        30    |   40        50        60       |70        80        90       100       110       120       130       140       150       160       170       180 |     190       200       210       220       230       240       250  |    260       270       280       290       300|      310       320       330    
                            1-MSE                            35-MSE                           68-MSE                                                                                                           182-MSE                                                                253-MSE                                         301-MSE                             


Chain F from PDB  Type:PROTEIN  Length:338
 aligned with HOLA_ECOLI | P28630 from UniProtKB/Swiss-Prot  Length:343

    Alignment length:338
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330        
           HOLA_ECOLI     1 MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHKPLAD 338
               SCOP domains d1xxhf2 F:1-211 delta subunit of DNA polymerase III, N-domain                                                                                                                                                      d1xxhf1 F:212-338 delta subunit                                                                                                 SCOP domains
               CATH domains -1xxhF01 F:2-142 P-loop containing nucleotide triphosphate hydrolases                                                                         1xxhF02 F:143-213  [code=1.10.8.60, no name defined]                   1xxhF03 F:214-338  [code=1.20.272.20, no name defined]                                                                        CATH domains
           Pfam domains (1) --------------------DNA_pol3_delta-1xxhF01 F:21-190                                                                                                                                           ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) --------------------DNA_pol3_delta-1xxhF02 F:21-190                                                                                                                                           ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author .eee...hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhhh.......ee.......hhhhhhhhhhhh.......eeeee........hhhhhhhhhhh......eeeeee.........hhhhhhhh...eeeee......hhhhhhhhhhhh...eehhhhhhhhhhh...hhhhhhhhhhhhhhhh...eehhhhhhhhhhhh.....hhhhhhh...hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xxh F   1 mIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAmSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLmGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGmmGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHKPLAD 338
                            |       10        20        30        40        50        60        70|       80        90       100       110       120       130       140       150       160       170       180       190       200       210       220  |    230       240       250       260       270       280    || 290       300       310       320       330        
                            1-MSE                                                                71-MSE                                                                                                                                                 223-MSE                                                       285-MSE                                                 
                                                                                                                                                                                                                                                                                                                       286-MSE                                                


Chain G from PDB  Type:PROTEIN  Length:364
 aligned with DPO3X_ECOLI | P06710 from UniProtKB/Swiss-Prot  Length:643

    Alignment length:364
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
          DPO3X_ECOLI     5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEP 368
               SCOP domains d1xxhg2 G:5-242 gamma subunit of DNA polymerase III, N-domain                                                                                                                                                                                 d1xxhg1 G:243-368 gamma subunit                                                                                                SCOP domains
               CATH domains 1xxhG01 G:5-178 P-loop containing nucleotide triphosphate hydrolases                                                                                                          1xxhG02 G:179-241  [code=1.10.8.60, no name defined]           1xxhG03 G:242-363  [code=1.20.272.10, no name defined]                                                                    ----- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..........hhhhhhhhhhhhh......eeeee.....hhhhhhhhhhhhhh............hhhhhhhhhh....eeeee.......hhhhhhh............eeeeeehhhhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhh..eeee....hhhhhhhhhhhhh...........hhhhhh....hhhhhhhhhhhhhhhh....hhhhhh........hhhhhhhhhhhh.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xxh G   5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEP 368
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    


Chain H from PDB  Type:PROTEIN  Length:366
 aligned with DPO3X_ECOLI | P06710 from UniProtKB/Swiss-Prot  Length:643

    Alignment length:366
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362      
          DPO3X_ECOLI     3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEP 368
               SCOP domains --d1xxhh2 H:5-242 gamma subunit of DNA polymerase III, N-domain                                                                                                                                                                                 d1xxhh1 H:243-368 gamma subunit                                                                                                SCOP domains
               CATH domains 1xxhH01 H:3-178 P-loop containing nucleotide triphosphate hydrolases                                                                                                            1xxhH02 H:179-241  [code=1.10.8.60, no name defined]           1xxhH03 H:242-368  [code=1.20.272.10, no name defined]                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh...........hhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhh...............hhhhhhhh.......eeee.....hhhhhhhhhhh..........eeeeee.hhhhhhhhhhhhhh........eeeeeee......hhhhhh....ee....hhhhhhhhhhhhhhhh.......hhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1xxh H   3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEP 368
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362      


Chain I from PDB  Type:PROTEIN  Length:364
 aligned with DPO3X_ECOLI | P06710 from UniProtKB/Swiss-Prot  Length:643

    Alignment length:364
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    
          DPO3X_ECOLI     5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEP 368
               SCOP domains d1xxhi2 I:5-242 gamma subunit of DNA polymerase III, N-domain                                                                                                                                                                                 d1xxhi1 I:243-368 gamma subunit                                                                                                SCOP domains
               CATH domains 1xxhI01 I:5-178 P-loop containing nucleotide triphosphate hydrolases                                                                                                          1xxhI02 I:179-241  [code=1.10.8.60, no name defined]           1xxhI03 I:242-368  [code=1.20.272.10, no name defined]                                                                          CATH domains
           Pfam domains (1) ---------------DNA_pol3_delta2-1xxhI01 I:20-179                                                                                                                                ----------------------------------------------------DNA_pol3_gamma3-1xxhI07 I:232-368                                                                                                         Pfam domains (1)
           Pfam domains (2) ---------------DNA_pol3_delta2-1xxhI02 I:20-179                                                                                                                                ----------------------------------------------------DNA_pol3_gamma3-1xxhI08 I:232-368                                                                                                         Pfam domains (2)
           Pfam domains (3) ---------------DNA_pol3_delta2-1xxhI03 I:20-179                                                                                                                                ----------------------------------------------------DNA_pol3_gamma3-1xxhI09 I:232-368                                                                                                         Pfam domains (3)
           Pfam domains (4) ---------------DNA_pol3_delta2-1xxhI04 I:20-179                                                                                                                                ----------------------------------------------------DNA_pol3_gamma3-1xxhI10 I:232-368                                                                                                         Pfam domains (4)
           Pfam domains (5) ---------------DNA_pol3_delta2-1xxhI05 I:20-179                                                                                                                                ----------------------------------------------------DNA_pol3_gamma3-1xxhI11 I:232-368                                                                                                         Pfam domains (5)
           Pfam domains (6) ---------------DNA_pol3_delta2-1xxhI06 I:20-179                                                                                                                                ----------------------------------------------------DNA_pol3_gamma3-1xxhI12 I:232-368                                                                                                         Pfam domains (6)
         Sec.struct. author hhhhhh...hhhhh..hhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhh...........hhhhhhhhhh....eeeee.....hhhhhhhhhhh..........eeeeeehhhhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xxh I   5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEP 368
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364    


Chain J from PDB  Type:PROTEIN  Length:334
 aligned with HOLB_ECOLI | P28631 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
           HOLB_ECOLI     1 MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQLMSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL 334
               SCOP domains d1xxhj2 J:1-207 delta prime subunit of DNA polymerase III, N-domain                                                                                                                                            d1xxhj1 J:208-334 delta prime subunit                                                                                           SCOP domains
               CATH domains -1xxhJ01 J:2-167 P-loop containing nucleotide triphosphate hydrolases                                                                                                  1xxhJ02 J:168-207                       1xxhJ03 J:208-334  [code=1.20.272.10, no name defined]                                                                          CATH domains
           Pfam domains (1) --------DNA_pol3_delta2-1xxhJ01 J:9-168                                                                                                                                 -------------------------------------DNApol3-delta_C-1xxhJ03 J:206-323                                                                                     ----------- Pfam domains (1)
           Pfam domains (2) --------DNA_pol3_delta2-1xxhJ02 J:9-168                                                                                                                                 -------------------------------------DNApol3-delta_C-1xxhJ04 J:206-323                                                                                     ----------- Pfam domains (2)
         Sec.struct. author ...hhhhhhhhhhh............eeee.....hhhhhhhhhhhhhh............hhhhhhhhh.....eeee.........hhhhhhhhhh...........eeeee.hhhhhhhhhhhhhhhhhhh....eeeeee.........hhhhhheeee....hhhhhhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.....hhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xxh J   1 mRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGmGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLmQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTmSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLmDALKRHHGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQLmSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL 334
                            |       10        20        30    |   40        50        60       |70        80        90       100       110       120       130       140       150       160       170       180 |     190       200       210       220       230       240       250  |    260       270       280       290       300|      310       320       330    
                            1-MSE                            35-MSE                           68-MSE                                                                                                           182-MSE                                                                253-MSE                                         301-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (6, 20)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (5, 30)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (4, 18)

Asymmetric Unit
(-)
Clan: P-loop_NTPase (1112)
(-)
Clan: no clan defined [family: DNA_pol3_gamma3] (5)
(-)
Clan: no clan defined [family: DNApol3-delta_C] (3)

(-) Gene Ontology  (20, 40)

Asymmetric Unit(hide GO term definitions)
Chain A,F   (HOLA_ECOLI | P28630)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003887    DNA-directed DNA polymerase activity    Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0071897    DNA biosynthetic process    The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006261    DNA-dependent DNA replication    A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.
cellular component
    GO:0009360    DNA polymerase III complex    The DNA polymerase III holoenzyme is a complex that contains 10 different types of subunits. These subunits are organized into 3 functionally essential sub-assemblies: the pol III core, the beta sliding clamp processivity factor and the clamp-loading complex. The pol III core carries out the polymerase and the 3'-5' exonuclease proofreading activities. The polymerase is tethered to the template via the sliding clamp processivity factor. The clamp-loading complex assembles the beta processivity factor onto the primer template and plays a central role in the organization and communication at the replication fork.

Chain B,C,D,G,H,I   (DPO3X_ECOLI | P06710)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003689    DNA clamp loader activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the opening of the ring structure of the PCNA complex, or any of the related sliding clamp complexes, and their closing around the DNA duplex.
    GO:0030337    DNA polymerase processivity factor activity    An enzyme regulator activity that increases the processivity of polymerization by DNA polymerase, by allowing the polymerase to move rapidly along DNA while remaining topologically bound to it.
    GO:0003887    DNA-directed DNA polymerase activity    Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0017111    nucleoside-triphosphatase activity    Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0071897    DNA biosynthetic process    The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006261    DNA-dependent DNA replication    A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.
cellular component
    GO:0009360    DNA polymerase III complex    The DNA polymerase III holoenzyme is a complex that contains 10 different types of subunits. These subunits are organized into 3 functionally essential sub-assemblies: the pol III core, the beta sliding clamp processivity factor and the clamp-loading complex. The pol III core carries out the polymerase and the 3'-5' exonuclease proofreading activities. The polymerase is tethered to the template via the sliding clamp processivity factor. The clamp-loading complex assembles the beta processivity factor onto the primer template and plays a central role in the organization and communication at the replication fork.
    GO:0043846    DNA polymerase III, clamp loader complex    A heptamer that includes the tau and gamma products of the dnaX gene and the chi/psi subcomplex. Confers structural asymmetry that allows the polymerase to replicate both leading and lagging strands.
    GO:0005663    DNA replication factor C complex    A complex that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase. In eukaryotes the complex consists of five polypeptides.

Chain E,J   (HOLB_ECOLI | P28631)
molecular function
    GO:0008408    3'-5' exonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003689    DNA clamp loader activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the opening of the ring structure of the PCNA complex, or any of the related sliding clamp complexes, and their closing around the DNA duplex.
    GO:0003887    DNA-directed DNA polymerase activity    Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0071897    DNA biosynthetic process    The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006261    DNA-dependent DNA replication    A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
cellular component
    GO:0009360    DNA polymerase III complex    The DNA polymerase III holoenzyme is a complex that contains 10 different types of subunits. These subunits are organized into 3 functionally essential sub-assemblies: the pol III core, the beta sliding clamp processivity factor and the clamp-loading complex. The pol III core carries out the polymerase and the 3'-5' exonuclease proofreading activities. The polymerase is tethered to the template via the sliding clamp processivity factor. The clamp-loading complex assembles the beta processivity factor onto the primer template and plays a central role in the organization and communication at the replication fork.
    GO:0005663    DNA replication factor C complex    A complex that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase. In eukaryotes the complex consists of five polypeptides.

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  DPO3X_ECOLI | P06710
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  HOLA_ECOLI | P28630
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  HOLB_ECOLI | P28631
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DPO3X_ECOLI | P06710: 1jr3 1njf 1njg 1xxi 2aya 3glf 3glg 3glh 3gli 5fku 5fkv
        HOLA_ECOLI | P28630: 1jqj 1jql 1jr3 1xxi 3glf 3glg 3glh 3gli
        HOLB_ECOLI | P28631: 1a5t 1jr3 1xxi 3glf 3glg 3glh 3gli

(-) Related Entries Specified in the PDB File

1xxi