4KJM - JenaLib

Title :   CRYSTAL STRUCTURE OF THE STAPHYLOCOCCUS AUREUS PROTEIN (NP_646141.1, DOMAIN 3912-4037) SIMILAR TO STREPTOCOCCAL ADHESINS EMB AND EBHA/EBHB

Authors :   M. Cymborowski, I. G. Shabalin, G. Joachimiak, M. Chruszcz, P. Gornick R. Zhang, A. Joachimiak, W. Minor, Midwest Center For Structural Midwest Center For Structural Genomics (Mcsg)

Date :   03 May 13 (Deposition) - 29 May 13 (Release) - 27 Nov 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (2x)

Keywords :   Adhesin, Mcsg, Midwest Center For Structural Genomics, Protein Structure Initiative, Psi, Psi-Biology, Cell Adhesion, Hypothetical Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Cymborowski, I. G. Shabalin, G. Joachimiak, M. Chruszcz, P. Gornicki, R. Zhang, A. Joachimiak, W. Minor
Crystal Structure Of The Staphylococcus Aureus Protein (Np_646141. 1, Domain 3912-4037) Similar To Streptococcal Adhesins Emb And Ebha/Ebhb
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 27)

Sites (25, 25)

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:70 , LEU A:72 , HOH A:321 , HOH A:328 , HOH A:352	BINDING SITE FOR RESIDUE NA A 201
02	AC2	SOFTWARE	GLN A:21 , ASN A:22 , ASP B:13 , ZN B:204 , ZN B:205 , HOH B:427	BINDING SITE FOR RESIDUE CL A 202
03	AC3	SOFTWARE	ASP A:13 , ZN A:204 , HOH A:428 , HOH A:430 , CL B:210 , HOH B:394 , HOH B:437	BINDING SITE FOR RESIDUE ZN A 203
04	AC4	SOFTWARE	ASP A:13 , LYS A:69 , ZN A:203 , HOH A:407 , HOH A:429 , HOH A:430 , CL B:210	BINDING SITE FOR RESIDUE ZN A 204
05	AC5	SOFTWARE	ASP A:118 , HOH A:431 , HOH A:432 , HOH A:433	BINDING SITE FOR RESIDUE ZN A 205
06	AC6	SOFTWARE	HIS A:121 , GLU A:125 , HOH A:406 , HOH A:412 , HOH A:434 , HOH A:435	BINDING SITE FOR RESIDUE ZN A 206
07	AC7	SOFTWARE	HIS A:121 , HOH A:411 , HOH A:436 , HOH A:437 , HOH A:438	BINDING SITE FOR RESIDUE ZN A 207
08	AC8	SOFTWARE	HIS A:70 , HOH A:439 , HOH A:440 , HOH A:441	BINDING SITE FOR RESIDUE ZN A 208
09	AC9	SOFTWARE	GLU A:125 , HOH A:442 , HOH A:443 , HOH A:444	BINDING SITE FOR RESIDUE ZN A 209
10	BC1	SOFTWARE	HOH A:415 , HOH A:445 , HOH A:446 , ASN B:108 , HOH B:413 , HOH B:441 , HOH B:442	BINDING SITE FOR RESIDUE ZN A 210
11	BC2	SOFTWARE	ASP A:94 , HOH A:447 , HOH A:448 , ASP B:94	BINDING SITE FOR RESIDUE ZN A 211
12	BC3	SOFTWARE	LEU B:24 , GLN B:111 , ARG B:112 , HOH B:356	BINDING SITE FOR RESIDUE ACT B 201
13	BC4	SOFTWARE	GLU A:59 , GLN A:60 , HIS B:121 , ZN B:206	BINDING SITE FOR RESIDUE CL B 202
14	BC5	SOFTWARE	ASP B:27 , HOH B:414 , HOH B:421 , HOH B:422 , HOH B:423	BINDING SITE FOR RESIDUE ZN B 203
15	BC6	SOFTWARE	CL A:202 , HOH A:388 , ASP B:13 , ZN B:205 , HOH B:424 , HOH B:425 , HOH B:427	BINDING SITE FOR RESIDUE ZN B 204
16	BC7	SOFTWARE	CL A:202 , ASP B:13 , LYS B:69 , ZN B:204 , HOH B:425 , HOH B:426 , HOH B:427	BINDING SITE FOR RESIDUE ZN B 205
17	BC8	SOFTWARE	GLU A:59 , HIS B:121 , CL B:202 , HOH B:428	BINDING SITE FOR RESIDUE ZN B 206
18	BC9	SOFTWARE	HIS B:121 , GLU B:125 , HOH B:386 , HOH B:429 , HOH B:430	BINDING SITE FOR RESIDUE ZN B 207
19	CC1	SOFTWARE	GLN B:99 , GLU B:125 , HOH B:385 , HOH B:431 , HOH B:432 , HOH B:433	BINDING SITE FOR RESIDUE ZN B 208
20	CC2	SOFTWARE	ASP B:118 , HOH B:415 , HOH B:434 , HOH B:435 , HOH B:436	BINDING SITE FOR RESIDUE ZN B 209
21	CC3	SOFTWARE	ASP A:13 , ZN A:203 , ZN A:204 , HOH A:430 , GLN B:21 , ASN B:22	BINDING SITE FOR RESIDUE CL B 210
22	CC4	SOFTWARE	HIS B:70 , LEU B:72 , HOH B:327 , HOH B:345 , HOH B:357	BINDING SITE FOR RESIDUE NA B 211
23	CC5	SOFTWARE	HIS B:70 , HOH B:399 , HOH B:403 , HOH B:438 , HOH B:439 , HOH B:440	BINDING SITE FOR RESIDUE ZN B 212
24	CC6	SOFTWARE	ASN A:12 , GLN B:111	BINDING SITE FOR RESIDUE CL B 213
25	CC7	SOFTWARE	GLU B:59 , HOH B:417 , HOH B:443 , HOH B:444 , HOH B:445	BINDING SITE FOR RESIDUE ZN B 214

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains d4kjma1 A:1-72 Ebh protein                                        d4kjma2 A:73-128 Ebh protein                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kjm A   1 TSTmGNLQTAINDKSGTLASQNFLDADEQKRNAYNQAVSAAETILNTAKTAVEQALNNVNNAKHALNGTQNLNNAKQAAITAINGASDLNQKQKDALKAQANGAQRVSNAQDVQHNATELNT 128
                               |    10        20        30        40     || 56        66        76        86        96       106       116       126  
                               |                                        46|                                                                           
                               4-MSE                                     53

Chain B from PDB  Type:PROTEIN  Length:118
                                                                                                                                                      
               SCOP domains d4kjmb1 B:3-72 Ebh protein                                    d4kjmb2 B:73-128 Ebh protein                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 4kjm B   3 TmGNLQTAINDKSGTLASQNFLDADEQKRNAYNQAVSAAETILAKTAVEQALNNVNNAKHALNGTQNLNNAKQAAITAINGASDLNQKQKDALKAQANGAQRVSNAQDVQHNATELNT 128
                             |      12        22        32        42  ||    60        70        80        90       100       110       120        
                             4-MSE                                   45|                                                                          
                                                                      54

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0 ; only for superseded entry 1XVH: 1,2)

Pfam Domains (0, 0)

Gene Ontology (4, 8)

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