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Biol. Unit 1
Info
Asym.Unit (92 KB)
Biol.Unit 1 (83 KB)
Biol.Unit 2 (163 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE STAPHYLOCOCCUS AUREUS PROTEIN (NP_646141.1, DOMAIN 3912-4037) SIMILAR TO STREPTOCOCCAL ADHESINS EMB AND EBHA/EBHB
Authors
:
M. Cymborowski, I. G. Shabalin, G. Joachimiak, M. Chruszcz, P. Gornick R. Zhang, A. Joachimiak, W. Minor, Midwest Center For Structural Midwest Center For Structural Genomics (Mcsg)
Date
:
03 May 13 (Deposition) - 29 May 13 (Release) - 27 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Adhesin, Mcsg, Midwest Center For Structural Genomics, Protein Structure Initiative, Psi, Psi-Biology, Cell Adhesion, Hypothetical Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Cymborowski, I. G. Shabalin, G. Joachimiak, M. Chruszcz, P. Gornicki, R. Zhang, A. Joachimiak, W. Minor
Crystal Structure Of The Staphylococcus Aureus Protein (Np_646141. 1, Domain 3912-4037) Similar To Streptococcal Adhesins Emb And Ebha/Ebhb
To Be Published
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
5m: ZINC ION (ZNm)
5n: ZINC ION (ZNn)
5o: ZINC ION (ZNo)
5p: ZINC ION (ZNp)
5q: ZINC ION (ZNq)
5r: ZINC ION (ZNr)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
MSE
2
Mod. Amino Acid
SELENOMETHIONINE
4
NA
-1
Ligand/Ion
SODIUM ION
5
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:70 , LEU A:72 , HOH A:321 , HOH A:328 , HOH A:352
BINDING SITE FOR RESIDUE NA A 201
02
AC2
SOFTWARE
GLN A:21 , ASN A:22 , ASP B:13 , ZN B:204 , ZN B:205 , HOH B:427
BINDING SITE FOR RESIDUE CL A 202
03
AC3
SOFTWARE
ASP A:13 , ZN A:204 , HOH A:428 , HOH A:430 , CL B:210 , HOH B:394 , HOH B:437
BINDING SITE FOR RESIDUE ZN A 203
04
AC4
SOFTWARE
ASP A:13 , LYS A:69 , ZN A:203 , HOH A:407 , HOH A:429 , HOH A:430 , CL B:210
BINDING SITE FOR RESIDUE ZN A 204
05
AC5
SOFTWARE
ASP A:118 , HOH A:431 , HOH A:432 , HOH A:433
BINDING SITE FOR RESIDUE ZN A 205
06
AC6
SOFTWARE
HIS A:121 , GLU A:125 , HOH A:406 , HOH A:412 , HOH A:434 , HOH A:435
BINDING SITE FOR RESIDUE ZN A 206
07
AC7
SOFTWARE
HIS A:121 , HOH A:411 , HOH A:436 , HOH A:437 , HOH A:438
BINDING SITE FOR RESIDUE ZN A 207
08
AC8
SOFTWARE
HIS A:70 , HOH A:439 , HOH A:440 , HOH A:441
BINDING SITE FOR RESIDUE ZN A 208
09
AC9
SOFTWARE
GLU A:125 , HOH A:442 , HOH A:443 , HOH A:444
BINDING SITE FOR RESIDUE ZN A 209
10
BC1
SOFTWARE
HOH A:415 , HOH A:445 , HOH A:446 , ASN B:108 , HOH B:413 , HOH B:441 , HOH B:442
BINDING SITE FOR RESIDUE ZN A 210
11
BC2
SOFTWARE
ASP A:94 , HOH A:447 , HOH A:448 , ASP B:94
BINDING SITE FOR RESIDUE ZN A 211
12
BC3
SOFTWARE
LEU B:24 , GLN B:111 , ARG B:112 , HOH B:356
BINDING SITE FOR RESIDUE ACT B 201
13
BC4
SOFTWARE
GLU A:59 , GLN A:60 , HIS B:121 , ZN B:206
BINDING SITE FOR RESIDUE CL B 202
14
BC5
SOFTWARE
ASP B:27 , HOH B:414 , HOH B:421 , HOH B:422 , HOH B:423
BINDING SITE FOR RESIDUE ZN B 203
15
BC6
SOFTWARE
CL A:202 , HOH A:388 , ASP B:13 , ZN B:205 , HOH B:424 , HOH B:425 , HOH B:427
BINDING SITE FOR RESIDUE ZN B 204
16
BC7
SOFTWARE
CL A:202 , ASP B:13 , LYS B:69 , ZN B:204 , HOH B:425 , HOH B:426 , HOH B:427
BINDING SITE FOR RESIDUE ZN B 205
17
BC8
SOFTWARE
GLU A:59 , HIS B:121 , CL B:202 , HOH B:428
BINDING SITE FOR RESIDUE ZN B 206
18
BC9
SOFTWARE
HIS B:121 , GLU B:125 , HOH B:386 , HOH B:429 , HOH B:430
BINDING SITE FOR RESIDUE ZN B 207
19
CC1
SOFTWARE
GLN B:99 , GLU B:125 , HOH B:385 , HOH B:431 , HOH B:432 , HOH B:433
BINDING SITE FOR RESIDUE ZN B 208
20
CC2
SOFTWARE
ASP B:118 , HOH B:415 , HOH B:434 , HOH B:435 , HOH B:436
BINDING SITE FOR RESIDUE ZN B 209
21
CC3
SOFTWARE
ASP A:13 , ZN A:203 , ZN A:204 , HOH A:430 , GLN B:21 , ASN B:22
BINDING SITE FOR RESIDUE CL B 210
22
CC4
SOFTWARE
HIS B:70 , LEU B:72 , HOH B:327 , HOH B:345 , HOH B:357
BINDING SITE FOR RESIDUE NA B 211
23
CC5
SOFTWARE
HIS B:70 , HOH B:399 , HOH B:403 , HOH B:438 , HOH B:439 , HOH B:440
BINDING SITE FOR RESIDUE ZN B 212
24
CC6
SOFTWARE
ASN A:12 , GLN B:111
BINDING SITE FOR RESIDUE CL B 213
25
CC7
SOFTWARE
GLU B:59 , HOH B:417 , HOH B:443 , HOH B:444 , HOH B:445
BINDING SITE FOR RESIDUE ZN B 214
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4kjma1 (A:1-72)
1b: SCOP_d4kjma2 (A:73-128)
1c: SCOP_d4kjmb1 (B:3-72)
1d: SCOP_d4kjmb2 (B:73-128)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
immunoglobulin/albumin-binding domain-like
(130)
Superfamily
:
Bacterial immunoglobulin/albumin-binding domains
(36)
Family
:
GA module, an albumin-binding domain
(8)
Protein domain
:
Ebh protein
(1)
Staphylococcus aureus [TaxId: 1280]
(1)
1a
d4kjma1
A:1-72
1b
d4kjma2
A:73-128
1c
d4kjmb1
B:3-72
1d
d4kjmb2
B:73-128
[
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CATH Domains
(0, 0 ; only for superseded entry 1XVH: 1,2)
Info
all CATH domains
1a: CATH_1xvhA02 ()
1b: CATH_1xvhA01 ()
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (92 KB)
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