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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN CC_0490 FROM CAULOBACTER CRESCENTUS, PFAM DUF152
 
Authors :  N. R. Krishnamurthy, D. Kumaran, S. Swaminathan, S. K. Burley, New Yor Research Center For Structural Genomics (Nysgxrc)
Date :  14 Sep 04  (Deposition) - 21 Sep 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Protein Structure Initiative (Psi), Hypothetical Protein, Alpha-Beta-Beta-Alpha, Two-Domain Structure, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. R. Krishnamurthy, D. Kumaran, S. Swaminathan
Crystal Structure Of A Conserved Hypothetical Protein From Caulobacter Crescentus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: CAULOBACTER VIBRIOIDES
    Organism Taxid: 155892

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2BME1Ligand/IonBETA-MERCAPTOETHANOL
3GOL1Ligand/IonGLYCEROL
4MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:8 , ARG A:227 , TRP A:235 , HOH A:425 , HOH A:510 , HOH A:520BINDING SITE FOR RESIDUE ACT A 272
2AC2SOFTWARECYS A:114 , GLY A:133 , TRP A:134 , TYR A:172BINDING SITE FOR RESIDUE BME A 273
3AC3SOFTWAREARG A:27 , GLN A:28 , GLY A:29 , ASP A:37 , SER A:38 , ARG A:148 , GLU A:151 , HOH A:277 , HOH A:435BINDING SITE FOR RESIDUE GOL A 271

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XFJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1XFJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XFJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XFJ)

(-) Exons   (0, 0)

(no "Exon" information available for 1XFJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
 aligned with Q9AAV3_CAUCR | Q9AAV3 from UniProtKB/TrEMBL  Length:261

    Alignment length:256
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254      
         Q9AAV3_CAUCR     5 ALPTVQSPLLSSLPGVKHAFFTRQGGVSKGIYDSLNVGRGSQDEPADVEENRARIARWFGGGPEDLNVCYQIHSTIAIVADGSWGDARPEGDAVVSKTPGVICGAMAADCAPVLLVDPEARIVAAAHAGWRGALDGVVQSAVDRMVELGASPANITGVVGPCIGPKSYEVGLEFLHRFEADCPGSGRFFKPGASEDKRFFDLPAFVLDRLATAGVERREWVGRDTRAEEEWFFSNRRAFLNNDGDYGRLLSAITLE 260
               SCOP domains d1xfja_ A: Hypothetical protein CC0490                                                                                                                                                                                                                           SCOP domains
               CATH domains 1xfjA00 A:5-260 CNF1/YfiH-like putative cysteine hydrolases                                                                                                                                                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.hhhhhh...eeeeee.......hhhhh..........hhhhhhhhhhhhhhhh..hhh.eee.........ee.............eeee.....eeeeee...eeeeeee....eeeeeeehhhhhhhhhhhhhhhhhhhh..hhhh.eeee.........eeehhhhhhhhhhh.hhhh.eee.....eeeehhhhhhhhhhhhh...eeee.............hhhhhhhh.......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1xfj A   5 ALPTVQSPLLSSLPGVKHAFFTRQGGVSKGIYDSLNVGRGSQDEPADVEENRARIARWFGGGPEDLNVCYQIHSTIAIVADGSWGDARPEGDAVVSKTPGVICGAmAADCAPVLLVDPEARIVAAAHAGWRGALDGVVQSAVDRmVELGASPANITGVVGPCIGPKSYEVGLEFLHRFEADCPGSGRFFKPGASEDKRFFDLPAFVLDRLATAGVERREWVGRDTRAEEEWFFSNRRAFLNNDGDYGRLLSAITLE 260
                                    14        24        34        44        54        64        74        84        94       104     | 114       124       134       144    |  154       164       174       184       194       204       214       224       234       244       254      
                                                                                                                                   110-MSE                                149-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1XFJ)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1XFJ)

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 Related Entries

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(-) Related Entries Specified in the PDB File

1rv9
1rw0
1u05 RELATED ID: NYSGXRC-T890 RELATED DB: TARGETDB