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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN YFIH FROM SALMONELLA ENTERICA SEROVAR TYPHI, PFAM DUF152
 
Authors :  J. Seetharaman, S. Swaminathan, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  15 Dec 03  (Deposition) - 17 Aug 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Protein Structure Initiative, Nysgxrc, Hypothetical Protein, Psi, New York Sgx Research Center For Structural Genomics, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Seetharaman, S. Swaminathan
Crystal Structure Of Hypothetical Protein Yfih
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHI
    Organism Taxid: 90370
    Strain: SUBSP. ENTERICA SEROVAR TYPHI

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1RW0)

(-) Sites  (0, 0)

(no "Site" information available for 1RW0)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1RW0)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:29 -Pro A:30
2Ser B:29 -Pro B:30

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1RW0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1RW0)

(-) Exons   (0, 0)

(no "Exon" information available for 1RW0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:243
 aligned with Q8Z4J1_SALTI | Q8Z4J1 from UniProtKB/TrEMBL  Length:243

    Alignment length:243
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240   
         Q8Z4J1_SALTI     1 MNALIVPQWPLPKGVAACSSTRIGGVSLSPYDSLNLGAHCGDNPEHVEENRKRLFAAGNLPSKPVWLEQVHGKNVLRLTGEPYASKRADASYSNTPGTVCAVMTADCLPVLFCNREGTEVAAAHAGWRGLCEGVLEETVTCFADKPENIIAWLGPAIGPAAFEVGPEVRDAFLAKDAQADSAFLPHGEKFLADIYQLARQRLANTGVEHVYGGDRCTFSESETFFSYRRDKTTGRMASFIWLI 243
               SCOP domains d1rw0a_ A: Hypothetical protein yfiH                                                                                                                                                                                                                SCOP domains
               CATH domains 1rw0A00 A:1-243 CNF1/YfiH-like putative cysteine hydrolases                                                                                                                                                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.........eeeeee......................hhhhhhhhhhhhhhhh................eee............eeee.....eeeeee...eeeeeee.....eeeeeehhhhhhhhhhhhhhhh...hhh.eeeee.........eehhhhhhhhhh.hhhhhh.eeee..eeeehhhhhhhhhhhhh...eeee.......................eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rw0 A   1 MNALIVPQWPLPKGVAACSSTRIGGVSLSPYDSLNLGAHCGDNPEHVEENRKRLFAAGNLPSKPVWLEQVHGKNVLRLTGEPYASKRADASYSNTPGTVCAVMTADCLPVLFCNREGTEVAAAHAGWRGLCEGVLEETVTCFADKPENIIAWLGPAIGPAAFEVGPEVRDAFLAKDAQADSAFLPHGEKFLADIYQLARQRLANTGVEHVYGGDRCTFSESETFFSYRRDKTTGRMASFIWLI 243
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240   


Chain B from PDB  Type:PROTEIN  Length:243
 aligned with Q8Z4J1_SALTI | Q8Z4J1 from UniProtKB/TrEMBL  Length:243

    Alignment length:243
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240   
         Q8Z4J1_SALTI     1 MNALIVPQWPLPKGVAACSSTRIGGVSLSPYDSLNLGAHCGDNPEHVEENRKRLFAAGNLPSKPVWLEQVHGKNVLRLTGEPYASKRADASYSNTPGTVCAVMTADCLPVLFCNREGTEVAAAHAGWRGLCEGVLEETVTCFADKPENIIAWLGPAIGPAAFEVGPEVRDAFLAKDAQADSAFLPHGEKFLADIYQLARQRLANTGVEHVYGGDRCTFSESETFFSYRRDKTTGRMASFIWLI 243
               SCOP domains d1rw0b_ B: Hypothetical protein yfiH                                                                                                                                                                                                                SCOP domains
               CATH domains 1rw0B00 B:1-243 CNF1/YfiH-like putative cysteine hydrolases                                                                                                                                                                                         CATH domains
           Pfam domains (1) ------------------Cu-oxidase_4-1rw0B01 B:19-242                                                                                                                                                                                                   - Pfam domains (1)
           Pfam domains (2) ------------------Cu-oxidase_4-1rw0B02 B:19-242                                                                                                                                                                                                   - Pfam domains (2)
         Sec.struct. author ...ee.........eeeeee......................hhhhhhhhhhhhhhhhh...............eee............eeee.....eeeeee...eeeeeee.....eeeeeehhhhhhhhhhhhhhhh...hhh.eeeee.........eehhhhhhhhhhhhhhhhh.eeee..eeeehhhhhhhhhhhhh....eee.......................eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rw0 B   1 MNALIVPQWPLPKGVAACSSTRIGGVSLSPYDSLNLGAHCGDNPEHVEENRKRLFAAGNLPSKPVWLEQVHGKNVLRLTGEPYASKRADASYSNTPGTVCAVMTADCLPVLFCNREGTEVAAAHAGWRGLCEGVLEETVTCFADKPENIIAWLGPAIGPAAFEVGPEVRDAFLAKDAQADSAFLPHGEKFLADIYQLARQRLANTGVEHVYGGDRCTFSESETFFSYRRDKTTGRMASFIWLI 243
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Cu-oxidase_4] (6)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  Cis Peptide Bonds
    Ser A:29 - Pro A:30   [ RasMol ]  
    Ser B:29 - Pro B:30   [ RasMol ]  
 

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