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(-) Description

Title :  SOLUTION STRUCTURE OF ZINC FINGER HIT DOMAIN IN PROTEIN FON
 
Authors :  F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  14 May 05  (Deposition) - 14 Nov 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Nmr, Zinc Finger Hit Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. He, T. Umehara, K. Tsuda, M. Inoue, T. Kigawa, T. Matsuda, T. Yabuki, M. Aoki, E. Seki, T. Terada, M. Shirouzu, A. Tanaka, S. Sugano, Y. Muto, S. Yokoyama
Solution Structure Of The Zinc Finger Hit Domain In Protein Fon
Protein Sci. V. 16 1577 2007
PubMed-ID: 17656577  |  Reference-DOI: 10.1110/PS.062635107
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 2
    Chains: A
    Engineered: YES
    Expression System Plasmid: P040906-13
    Expression System Vector Type: PLASMID
    Fragment: ZINC FINGER HIT DOMAIN
    Gene: ZNHIT2, C11ORF5
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL FREE PROTEIN SYNTHESIS
    Synonym: PROTEIN FON

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:14 , CYS A:17 , CYS A:37 , CYS A:41BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWARECYS A:29 , CYS A:32 , HIS A:45 , CYS A:48BINDING SITE FOR RESIDUE ZN A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1X4S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1X4S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1X4S)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_HITPS51083 Zinc finger HIT-type profile.ZNHI2_HUMAN7-41  1A:14-48

(-) Exons   (1, 1)

NMR Structure (1, 1)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003105971aENSE00001192854chr11:64885170-648838761295ZNHI2_HUMAN1-4184181A:8-59 (gaps)93

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:59
 aligned with ZNHI2_HUMAN | Q9UHR6 from UniProtKB/Swiss-Prot  Length:403

    Alignment length:100
                                   1                                                                                            
                                   | 3        13        23        33        43        53        63        73        83        93
           ZNHI2_HUMAN    - -------MEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGTCAENFYRDQVLGELRGCSAPPSRLASALRRLRQQRETEDEPGEAGLSSGPAPG 93
               SCOP domains -------d1x4sa1 A:8-53                                ----------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------zf-HIT-1x4sA01 A:10-43            --------------------------------------------------------- Pfam domains
         Sec.struct. author ...........ee..........ee.ee......ee..hhhhhh....hhh..-----------------------------------------...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------ZF_HIT  PDB: A:14-48 UniProt: 7-41 ---------------------------------------------------- PROSITE
               Transcript 1 -------Exon 1.1a  PDB: A:8-59 (gaps) UniProt: 1-418 [INCOMPLETE]                                     Transcript 1
                  1x4s A  1 GSSGSSGMEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTHGTCAENFY-----------------------------------------SGPSSG 59
                                    10        20        30        40        50  |      -         -         -         -    |   59
                                                                               53                                        54
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1X4S)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: TRASH (61)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (ZNHI2_HUMAN | Q9UHR6)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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