10 20 30 40 50 60 70 80 1X4S - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric Unit
HEADER METAL BINDING PROTEIN 14-MAY-05 1X4S
TITLE SOLUTION STRUCTURE OF ZINC FINGER HIT DOMAIN IN PROTEIN FON
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER HIT DOMAIN; COMPND 5 SYNONYM: PROTEIN FON; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNHIT2, C11ORF5; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040906-13; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS
KEYWDS NMR, ZINC FINGER HIT DOMAIN, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 4 RSGI, METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 3 24-FEB-09 1X4S 1 VERSN REVDAT 2 01-JAN-08 1X4S 1 JRNL REVDAT 1 14-NOV-05 1X4S 0
JRNL AUTH F.HE,T.UMEHARA,K.TSUDA,M.INOUE,T.KIGAWA,T.MATSUDA, JRNL AUTH 2 T.YABUKI,M.AOKI,E.SEKI,T.TERADA,M.SHIROUZU, JRNL AUTH 3 A.TANAKA,S.SUGANO,Y.MUTO,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE ZINC FINGER HIT DOMAIN JRNL TITL 2 IN PROTEIN FON JRNL REF PROTEIN SCI. V. 16 1577 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17656577 JRNL DOI 10.1110/PS.062635107
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT,P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 1X4S COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-05. REMARK 100 THE RCSB ID CODE IS RCSB024378.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM U-15, 13C; 20MM D-TRIS- REMARK 210 HCL(PH 7.0); 100MM NACL; 100UM REMARK 210 ZNCL2; 1MM D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE REMARK 210 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.863, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 159.35 -39.27 REMARK 500 1 CYS A 14 108.28 -48.62 REMARK 500 1 ALA A 19 126.00 -33.33 REMARK 500 1 GLU A 21 46.38 -83.17 REMARK 500 1 PRO A 24 98.61 -69.73 REMARK 500 1 ALA A 25 89.47 -63.01 REMARK 500 1 PRO A 30 4.12 -69.74 REMARK 500 1 ASN A 33 54.98 35.75 REMARK 500 1 THR A 47 39.10 -98.31 REMARK 500 1 ASN A 51 53.62 -97.16 REMARK 500 1 PHE A 52 -54.33 -134.27 REMARK 500 1 PRO A 56 0.85 -69.76 REMARK 500 1 SER A 58 146.88 -37.90 REMARK 500 2 CYS A 14 99.08 -42.23 REMARK 500 2 PHE A 16 -34.24 -133.38 REMARK 500 2 ALA A 19 115.01 -34.03 REMARK 500 2 GLU A 21 43.24 -93.65 REMARK 500 2 PRO A 30 5.48 -69.80 REMARK 500 2 ASN A 33 54.62 32.67 REMARK 500 2 CYS A 48 36.86 -83.30 REMARK 500 2 GLU A 50 -39.06 -34.11 REMARK 500 3 CYS A 14 104.30 -36.49 REMARK 500 3 ALA A 19 134.20 -30.17 REMARK 500 3 GLU A 21 40.22 -86.86 REMARK 500 3 ALA A 25 87.94 -67.86 REMARK 500 3 PRO A 30 6.94 -69.76 REMARK 500 3 ASN A 33 54.94 33.95 REMARK 500 3 THR A 47 40.62 -100.33 REMARK 500 3 PRO A 56 2.85 -69.79 REMARK 500 4 ALA A 11 -177.69 -67.37 REMARK 500 4 CYS A 14 97.24 -41.73 REMARK 500 4 ALA A 19 125.64 -33.59 REMARK 500 4 GLU A 21 41.00 -91.61 REMARK 500 4 PRO A 30 7.47 -69.79 REMARK 500 4 ASN A 33 54.98 31.91 REMARK 500 4 ALA A 49 35.23 -83.27 REMARK 500 4 PHE A 52 104.05 -53.45 REMARK 500 5 MET A 8 41.93 -102.36 REMARK 500 5 PRO A 10 83.38 -69.82 REMARK 500 5 ALA A 11 136.09 -174.79 REMARK 500 5 CYS A 14 102.33 -49.76 REMARK 500 5 PHE A 16 -37.70 -39.70 REMARK 500 5 VAL A 22 120.17 -37.52 REMARK 500 5 PRO A 24 91.03 -69.78 REMARK 500 5 ALA A 25 94.62 -60.87 REMARK 500 5 PRO A 30 5.98 -69.73 REMARK 500 5 ASN A 33 55.00 31.21 REMARK 500 5 THR A 47 41.28 -102.85 REMARK 500 5 ASN A 51 37.78 -93.62 REMARK 500 5 PRO A 56 2.25 -69.76 REMARK 500 6 PRO A 10 85.42 -69.75 REMARK 500 6 CYS A 14 103.54 -48.31 REMARK 500 6 ALA A 19 149.50 -35.89 REMARK 500 6 VAL A 22 97.29 -44.98 REMARK 500 6 ALA A 25 94.20 -55.18 REMARK 500 6 PRO A 30 8.94 -69.74 REMARK 500 6 ASN A 51 40.22 -108.72 REMARK 500 6 PRO A 56 -175.36 -69.78 REMARK 500 7 CYS A 14 99.53 -54.70 REMARK 500 7 ALA A 19 102.57 -57.12 REMARK 500 7 ALA A 25 93.98 -56.06 REMARK 500 7 PRO A 30 2.55 -69.74 REMARK 500 7 ASN A 33 54.97 31.82 REMARK 500 7 LEU A 39 -35.71 -35.25 REMARK 500 7 ASN A 51 33.99 -92.10 REMARK 500 8 ALA A 11 -176.03 -171.63 REMARK 500 8 CYS A 14 104.96 -49.35 REMARK 500 8 ALA A 19 127.93 -34.58 REMARK 500 8 GLU A 21 42.76 -86.36 REMARK 500 8 ALA A 25 91.69 -65.64 REMARK 500 8 PRO A 30 6.76 -69.75 REMARK 500 8 ASN A 33 54.95 32.66 REMARK 500 8 ALA A 49 37.38 -84.26 REMARK 500 8 PRO A 56 -179.82 -69.74 REMARK 500 8 SER A 57 45.53 -107.94 REMARK 500 9 SER A 5 41.99 -81.30 REMARK 500 9 PRO A 10 82.00 -69.73 REMARK 500 9 CYS A 14 108.45 -56.54 REMARK 500 9 ALA A 19 126.08 -34.74 REMARK 500 9 GLU A 21 43.93 -85.05 REMARK 500 9 PRO A 30 4.56 -69.80 REMARK 500 9 ASN A 33 54.94 33.67 REMARK 500 9 PRO A 56 99.75 -69.75 REMARK 500 10 GLU A 9 152.16 -45.38 REMARK 500 10 CYS A 14 95.92 -42.26 REMARK 500 10 ALA A 19 141.92 -34.11 REMARK 500 10 VAL A 22 121.87 -33.57 REMARK 500 10 ALA A 25 86.57 -66.35 REMARK 500 10 PRO A 30 8.23 -69.72 REMARK 500 10 ASN A 33 54.91 36.23 REMARK 500 10 SER A 54 77.60 -115.28 REMARK 500 11 GLU A 9 150.18 -48.94 REMARK 500 11 PRO A 10 88.22 -69.74 REMARK 500 11 CYS A 14 104.30 -36.90 REMARK 500 11 PHE A 16 -32.80 -131.81 REMARK 500 11 ALA A 19 118.15 -34.86 REMARK 500 11 GLU A 21 44.00 -89.88 REMARK 500 11 PRO A 30 2.22 -69.77 REMARK 500 11 ASN A 33 54.46 33.03 REMARK 500 11 GLU A 50 -30.78 -36.54 REMARK 500 12 SER A 2 139.08 -170.17 REMARK 500 12 ALA A 11 174.30 -57.67 REMARK 500 12 CYS A 14 99.45 -36.97 REMARK 500 12 ALA A 19 124.84 -33.27 REMARK 500 12 GLU A 21 42.81 -85.35 REMARK 500 12 ALA A 25 97.16 -67.47 REMARK 500 12 PRO A 30 6.49 -69.79 REMARK 500 12 THR A 47 39.95 -97.09 REMARK 500 13 SER A 5 43.31 -94.21 REMARK 500 13 GLU A 9 134.99 -33.50 REMARK 500 13 ALA A 19 129.00 -34.35 REMARK 500 13 VAL A 22 95.35 -44.84 REMARK 500 13 PRO A 24 82.95 -69.77 REMARK 500 13 ALA A 25 105.47 -35.19 REMARK 500 13 PRO A 30 6.15 -69.85 REMARK 500 13 ASN A 33 54.75 31.83 REMARK 500 13 LEU A 39 -35.45 -37.36 REMARK 500 13 THR A 47 41.67 -99.14 REMARK 500 13 ALA A 49 39.44 -81.48 REMARK 500 14 CYS A 14 105.49 -59.63 REMARK 500 14 PHE A 16 -31.54 -35.84 REMARK 500 14 ALA A 19 134.89 -31.17 REMARK 500 14 GLU A 21 45.40 -80.95 REMARK 500 14 PRO A 30 7.24 -69.76 REMARK 500 14 THR A 47 53.64 -96.53 REMARK 500 14 CYS A 48 33.70 -89.92 REMARK 500 14 SER A 54 44.80 37.55 REMARK 500 15 PRO A 10 87.56 -69.67 REMARK 500 15 CYS A 14 92.43 -64.52 REMARK 500 15 ALA A 19 130.71 -28.32 REMARK 500 15 GLU A 21 49.86 -88.47 REMARK 500 15 PRO A 30 8.21 -69.74 REMARK 500 16 SER A 6 39.68 -86.75 REMARK 500 16 MET A 8 39.40 -98.55 REMARK 500 16 PHE A 16 -38.27 -34.53 REMARK 500 16 ALA A 19 132.89 -28.41 REMARK 500 16 GLU A 21 43.45 -85.69 REMARK 500 16 PRO A 30 5.86 -69.85 REMARK 500 16 ASN A 33 55.05 37.28 REMARK 500 16 THR A 47 44.28 -107.40 REMARK 500 16 PRO A 56 86.65 -69.76 REMARK 500 17 PRO A 10 80.10 -69.80 REMARK 500 17 CYS A 14 88.52 -64.48 REMARK 500 17 ALA A 19 133.97 -32.45 REMARK 500 17 GLU A 21 38.91 -97.35 REMARK 500 17 ALA A 25 84.98 -58.76 REMARK 500 17 PRO A 30 6.57 -69.79 REMARK 500 17 ASN A 33 55.06 34.90 REMARK 500 17 CYS A 48 35.70 -86.25 REMARK 500 17 PRO A 56 95.97 -69.74 REMARK 500 18 SER A 2 43.49 35.94 REMARK 500 18 CYS A 14 106.97 -59.10 REMARK 500 18 PHE A 16 -33.76 -39.83 REMARK 500 18 ALA A 19 119.18 -34.81 REMARK 500 18 GLU A 21 46.29 -91.99 REMARK 500 18 PRO A 30 4.90 -69.75 REMARK 500 18 ASN A 33 54.95 33.57 REMARK 500 18 SER A 54 49.80 34.08 REMARK 500 18 PRO A 56 -173.39 -69.80 REMARK 500 18 SER A 57 46.10 -84.78 REMARK 500 19 SER A 3 159.19 -43.05 REMARK 500 19 SER A 5 42.05 71.14 REMARK 500 19 CYS A 14 92.27 -56.89 REMARK 500 19 VAL A 22 119.77 -35.80 REMARK 500 19 PRO A 24 95.12 -69.77 REMARK 500 19 ALA A 25 94.54 -55.65 REMARK 500 19 PRO A 30 8.01 -69.81 REMARK 500 19 ASN A 33 54.96 33.71 REMARK 500 19 THR A 47 40.47 -93.10 REMARK 500 19 PRO A 56 88.54 -69.80 REMARK 500 20 GLU A 9 137.45 -39.80 REMARK 500 20 ALA A 11 179.66 -54.97 REMARK 500 20 CYS A 14 102.77 -41.18 REMARK 500 20 PHE A 16 -33.72 -130.05 REMARK 500 20 ALA A 19 134.06 -31.53 REMARK 500 20 GLU A 21 40.88 -96.10 REMARK 500 20 ALA A 25 85.26 -65.15 REMARK 500 20 PRO A 30 7.71 -69.74 REMARK 500 20 THR A 47 44.81 -103.55 REMARK 500 20 ALA A 49 36.78 -86.55 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 14 SG REMARK 620 2 CYS A 17 SG 114.7 REMARK 620 3 CYS A 37 SG 113.7 106.0 REMARK 620 4 CYS A 41 SG 105.6 105.9 110.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 29 SG REMARK 620 2 CYS A 32 SG 101.7 REMARK 620 3 HIS A 45 NE2 105.5 106.0 REMARK 620 4 CYS A 48 SG 113.0 112.3 116.9 REMARK 620 N 1 2 3
REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001004088.1 RELATED DB: TARGETDB
DBREF 1X4S A 8 53 UNP Q9UHR6 ZNHI2_HUMAN 1 46
SEQADV 1X4S GLY A 1 UNP Q9UHR6 EXPRESSION TAG SEQADV 1X4S SER A 2 UNP Q9UHR6 EXPRESSION TAG SEQADV 1X4S SER A 3 UNP Q9UHR6 EXPRESSION TAG SEQADV 1X4S GLY A 4 UNP Q9UHR6 EXPRESSION TAG SEQADV 1X4S SER A 5 UNP Q9UHR6 EXPRESSION TAG SEQADV 1X4S SER A 6 UNP Q9UHR6 EXPRESSION TAG SEQADV 1X4S GLY A 7 UNP Q9UHR6 EXPRESSION TAG SEQADV 1X4S SER A 54 UNP Q9UHR6 EXPRESSION TAG SEQADV 1X4S GLY A 55 UNP Q9UHR6 EXPRESSION TAG SEQADV 1X4S PRO A 56 UNP Q9UHR6 EXPRESSION TAG SEQADV 1X4S SER A 57 UNP Q9UHR6 EXPRESSION TAG SEQADV 1X4S SER A 58 UNP Q9UHR6 EXPRESSION TAG SEQADV 1X4S GLY A 59 UNP Q9UHR6 EXPRESSION TAG
SEQRES 1 A 59 GLY SER SER GLY SER SER GLY MET GLU PRO ALA GLY PRO SEQRES 2 A 59 CYS GLY PHE CYS PRO ALA GLY GLU VAL GLN PRO ALA ARG SEQRES 3 A 59 TYR THR CYS PRO ARG CYS ASN ALA PRO TYR CYS SER LEU SEQRES 4 A 59 ARG CYS TYR ARG THR HIS GLY THR CYS ALA GLU ASN PHE SEQRES 5 A 59 TYR SER GLY PRO SER SER GLY
HET ZN A 201 1 HET ZN A 401 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
HELIX 1 1 LEU A 39 THR A 44 1 6 HELIX 2 2 ALA A 49 ASN A 51 5 3
SHEET 1 A 2 GLY A 12 PRO A 13 0 SHEET 2 A 2 PRO A 24 ALA A 25 -1 SHEET 1 B 2 TYR A 27 THR A 28 0 SHEET 2 B 2 PRO A 35 TYR A 36 -1
LINK ZN ZN A 201 SG CYS A 14 1555 1555 2.25 LINK ZN ZN A 201 SG CYS A 17 1555 1555 2.26 LINK ZN ZN A 201 SG CYS A 37 1555 1555 2.32 LINK ZN ZN A 201 SG CYS A 41 1555 1555 2.35 LINK ZN ZN A 401 SG CYS A 29 1555 1555 2.36 LINK ZN ZN A 401 SG CYS A 32 1555 1555 2.35 LINK ZN ZN A 401 NE2 HIS A 45 1555 1555 2.03 LINK ZN ZN A 401 SG CYS A 48 1555 1555 2.26
SITE 1 AC1 4 CYS A 14 CYS A 17 CYS A 37 CYS A 41 SITE 1 AC2 4 CYS A 29 CYS A 32 HIS A 45 CYS A 48
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000