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(-) Description

Title :  SOLUTION STRUCTURE OF THE N-TERMINAL UBIQUITIN-LIKE DOMAIN IN MOUSE UBIQUITIN-LIKE PROTEIN SB132
 
Authors :  C. Zhao, T. Tomizawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  07 Apr 05  (Deposition) - 07 Oct 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Sb132, Ubiquitin-Like Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Zhao, T. Tomizawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of The N-Terminal Ubiquitin-Like Domain In Mouse Ubiquitin-Like Protein Sb132
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UBIQUITIN-LIKE PROTEIN SB132
    Chains: A
    Engineered: YES
    Expression System Plasmid: P050111-20
    Expression System Vector Type: PLASMID
    Fragment: UBIQUITIN-LIKE DOMAIN
    Gene: SB132
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: CELL-FREE PROTEIN SYNTHESIS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

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(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1X1M)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1UBIQUITIN_2PS50053 Ubiquitin domain profile.UBL7_MOUSE39-92  1A:46-99

(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:107
 aligned with UBL7_MOUSE | Q91W67 from UniProtKB/Swiss-Prot  Length:380

    Alignment length:131
                                   1                                                                                                                           
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123 
           UBL7_MOUSE     - -------MSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSWPEPDQKPEPVDKVAALREFRVLHTALHSSS 124
               SCOP domains -------d1x1ma1 A:8-101 Ubiquitin-like protein 7                                                      ------------------------------ SCOP domains
               CATH domains 1x1mA00 A:1-107 Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1                                                  CATH domains
               Pfam domains -------------------------------------------ubiquitin-1x1mA01 A:44-100                               ------------------------------- Pfam domains
         Sec.struct. author ..............eeeee........eeee...............hhhhhhhhhhh..........eeeee..ee......hhhh......eeeeee......------------------------... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------UBIQUITIN_2  PDB: A:46-99 UniProt: 39-92              -------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1x1m A   1 GSSGSSGMSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSWSGP------------------------SSG 107
                                    10        20        30        40        50        60        70        80        90       100   |     -         -       106 
                                                                                                                                 104                      105
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: Ubiquitin (279)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (UBL7_MOUSE | Q91W67)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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