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(-) Description

Title :  HOST-GUEST PEPTIDE (PRO-PRO-GLY)4-(PRO-ALLOHYP-GLY)-(PRO-PRO-GLY)4
 
Authors :  N. Jiravanichanun, C. Hongo, G. Wu, K. Noguchi, K. Okuyama, N. Nishino, T. Silva
Date :  05 Apr 05  (Deposition) - 14 Jun 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Allo-Hyp, Non-Natural Amino Acid, Collagen Model Peptide, Puckering, Triple-Helix Stability, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Jiravanichanun, C. Hongo, G. Wu, K. Noguchi, K. Okuyama, N. Nishino, T. Silva
Unexpected Puckering Of Hydroxyproline In The Guest Triplets, Hyp-Pro-Gly And Pro-Allohyp-Gly Sandwiched Between Pro-Pro-Gly Sequence
Chembiochem V. 6 1184 2005
PubMed-ID: 15929160  |  Reference-DOI: 10.1002/CBIC.200500055
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HOST-GUEST PEPTIDE (PRO-PRO-GLY)4-(PRO-ALLOHYP- GLY)-(PRO-PRO-GLY)4
    Chains: A, B, C, D, E
    Engineered: YES
    Other Details: COLLAGEN MODEL PEPTIDE WAS CHEMICALLY SYSTHESIZED
    Synthetic: YES
 
Molecule 2 - HOST-GUEST PEPTIDE (PRO-PRO-GLY)4-(PRO-ALLOHYP- GLY)-(PRO-PRO-GLY)4
    Chains: F
    Engineered: YES
    Other Details: COLLAGEN MODEL PEPTIDE WAS CHEMICALLY SYSTHESIZED
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric/Biological Unit (1, 7)
No.NameCountTypeFull Name
1HYP7Mod. Amino Acid4-HYDROXYPROLINE

(-) Sites  (0, 0)

(no "Site" information available for 1X1K)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1X1K)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1X1K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1X1K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1X1K)

(-) Exons   (0, 0)

(no "Exon" information available for 1X1K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:27
 aligned with Q80BK4_SHV2 | Q80BK4 from UniProtKB/TrEMBL  Length:99

    Alignment length:27
                                    49        59       
           Q80BK4_SHV2   40 PPGPPGPPGPPGPPGPPGPPGPPGPPG 66
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  1x1k A  1 PPGPPGPPGPPGPpGPPGPPGPPGPPG 27
                                    10   |    20       
                                        14-HYP         


Chain B from PDB  Type:PROTEIN  Length:27
 aligned with Q80BK4_SHV2 | Q80BK4 from UniProtKB/TrEMBL  Length:99

    Alignment length:27
                                    49        59       
           Q80BK4_SHV2   40 PPGPPGPPGPPGPPGPPGPPGPPGPPG 66
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  1x1k B  1 PPGPPGPPGPPGPpGPPGPPGPPGPPG 27
                                    10   |    20       
                                        14-HYP         


Chain C from PDB  Type:PROTEIN  Length:27
 aligned with Q80BK4_SHV2 | Q80BK4 from UniProtKB/TrEMBL  Length:99

    Alignment length:27
                                    49        59       
           Q80BK4_SHV2   40 PPGPPGPPGPPGPPGPPGPPGPPGPPG 66
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  1x1k C  1 PPGPPGPPGPPGPpGPPGPPGPPGPPG 27
                                    10   |    20       
                                        14-HYP         


Chain D from PDB  Type:PROTEIN  Length:27
 aligned with Q80BK4_SHV2 | Q80BK4 from UniProtKB/TrEMBL  Length:99

    Alignment length:27
                                    49        59       
           Q80BK4_SHV2   40 PPGPPGPPGPPGPPGPPGPPGPPGPPG 66
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  1x1k D  1 PPGPPGPPGPPGPpGPPGPPGPPGPPG 27
                                    10   |    20       
                                        14-HYP         


Chain E from PDB  Type:PROTEIN  Length:26
 aligned with Q80BK4_SHV2 | Q80BK4 from UniProtKB/TrEMBL  Length:99

    Alignment length:26
                                    49        59      
           Q80BK4_SHV2   40 PPGPPGPPGPPGPPGPPGPPGPPGPP 65
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .......................... Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  1x1k E  1 PPGPPGPPGPPGPpGPPGPPGPPGPP 26
                                    10   |    20      
                                        14-HYP        


Chain F from PDB  Type:PROTEIN  Length:29
 aligned with Q80BK4_SHV2 | Q80BK4 from UniProtKB/TrEMBL  Length:99

    Alignment length:29
                                    46        56         
           Q80BK4_SHV2   37 PPGPPGPPGPPGPPGPPGPPGPPGPPGPP 65
               SCOP domains ----------------------------- SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author ............................. Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----------------------------- PROSITE
                 Transcript ----------------------------- Transcript
                  1x1k F  1 PPGPPGPPGPPGPpGPpGPPGPPGPPGPP 29
                                    10   |  | 20         
                                        14-HYP           
                                           17-HYP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1X1K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1X1K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1X1K)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q80BK4_SHV2 | Q80BK4)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q80BK4_SHV2 | Q80BK4: 1k6f 1wzb 1ym8 2cuo 2d3f 2d3h 3ah9 3ai6 3b0s 3b2c

(-) Related Entries Specified in the PDB File

1itt (PRO-PRO-GLY)9