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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COLLAGEN TRIPLE HELIX MODEL [{HYP(R)-HYP(R)-GLY}10]3
 
Authors :  K. Kawahara, S. Nakamura, Y. Nishi, S. Uchiyama, Y. Nishiuchi, T. Nakazawa, T. Ohkubo, Y. Kobayashi
Date :  03 Mar 05  (Deposition) - 31 Jan 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Collagen Stability, Puckering, Amino Acid-Preferences, Triple Helix, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Kawahara, Y. Nishi, S. Nakamura, S. Uchiyama, Y. Nishiuchi, T. Nakazawa, T. Ohkubo, Y. Kobayashi
Effect Of Hydration On The Stability Of The Collagen-Like Triple-Helical Structure Of [4(R)-Hydroxyprolyl-4(R)-Hydroxyprolylglycine]10
Biochemistry V. 44 15812 2005
PubMed-ID: 16313184  |  Reference-DOI: 10.1021/BI051619M
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COLLAGEN TRIPLE HELIX
    Chains: A, B, C
    Engineered: YES
    Other Details: THE PROTEIN WAS CHEMICALLY SYNTHESIZED
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 59)

Asymmetric/Biological Unit (1, 59)
No.NameCountTypeFull Name
1HYP59Mod. Amino Acid4-HYDROXYPROLINE

(-) Sites  (0, 0)

(no "Site" information available for 1WZB)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WZB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WZB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WZB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WZB)

(-) Exons   (0, 0)

(no "Exon" information available for 1WZB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:30
 aligned with Q80BK4_SHV2 | Q80BK4 from UniProtKB/TrEMBL  Length:99

    Alignment length:30
                                    46        56        66
           Q80BK4_SHV2   37 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPG 66
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author .............................. Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  1wzb A  1 ppGppGppGppGppGppGppGppGppGppG 30
                            || || ||10| || || 20 || || |30
                            || || || || 14-HYP|| || || 29-HYP
                            1-HYP || || | 16-HYP || || |  
                             2-HYP|| || |  17-HYP|| || |  
                               4-HYP || |    19-HYP || |  
                                5-HYP|| |     20-HYP|| |  
                                  7-HYP |       22-HYP |  
                                   8-HYP|        23-HYP|  
                                    10-HYP         25-HYP 
                                     11-HYP         26-HYP


Chain B from PDB  Type:PROTEIN  Length:29
 aligned with Q80BK4_SHV2 | Q80BK4 from UniProtKB/TrEMBL  Length:99

    Alignment length:29
                                    46        56         
           Q80BK4_SHV2   37 PPGPPGPPGPPGPPGPPGPPGPPGPPGPP 65
               SCOP domains ----------------------------- SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author ............................. Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----------------------------- PROSITE
                 Transcript ----------------------------- Transcript
                  1wzb B  1 ppGppGppGppGppGppGppGppGppGpp 29
                            || || ||10| || || 20 || || ||
                            || || || || 14-HYP|| || || 29-HYP
                            1-HYP || || | 16-HYP || || | 
                             2-HYP|| || |  17-HYP|| || | 
                               4-HYP || |    19-HYP || | 
                                5-HYP|| |     20-HYP|| | 
                                  7-HYP |       22-HYP | 
                                   8-HYP|        23-HYP| 
                                    10-HYP         25-HYP
                                     11-HYP         26-HYP


Chain C from PDB  Type:PROTEIN  Length:29
 aligned with Q80BK4_SHV2 | Q80BK4 from UniProtKB/TrEMBL  Length:99

    Alignment length:29
                                    47        57         
           Q80BK4_SHV2   38 PGPPGPPGPPGPPGPPGPPGPPGPPGPPG 66
               SCOP domains ----------------------------- SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author ............................. Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----------------------------- PROSITE
                 Transcript ----------------------------- Transcript
                  1wzb C  2 pGppGppGppGppGppGppGppGppGppG 30
                            | || || 11 || || |21|| || || 
                            | || || || 14-HYP|| || || 29-HYP
                            2-HYP|| || | 16-HYP || || |  
                              4-HYP || |  17-HYP|| || |  
                               5-HYP|| |    19-HYP || |  
                                 7-HYP |     20-HYP|| |  
                                  8-HYP|       22-HYP |  
                                   10-HYP       23-HYP|  
                                    11-HYP        25-HYP 
                                      13-HYP       26-HYP
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1WZB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WZB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1WZB)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (Q80BK4_SHV2 | Q80BK4)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

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UniProtKB/TrEMBL
        Q80BK4_SHV2 | Q80BK4: 1k6f 1x1k 1ym8 2cuo 2d3f 2d3h 3ah9 3ai6 3b0s 3b2c

(-) Related Entries Specified in the PDB File

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