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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TERMINAL OXYGENASE COMPONENT OF CARBAZOLE 1, 9A-DIOXYGENASE, A NON-HEME IRON OXYGENASE SYSTEM CATALYZING THE NOVEL ANGULAR DIOXYGENATION FOR CARBAZOLE AND DIOXIN
 
Authors :  H. Nojiri, Y. Ashikawa, H. Noguchi, J. -W. Nam, M. Urata, Z. Fujimoto, H. T. Yoshida, H. Habe, T. Omori
Date :  05 Jan 05  (Deposition) - 23 Aug 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Terminal Oxygenase, Carbazole 1, 9A-Dioxygenase, Angular Dioxygenase, Rieske Non-Heme Iron Oxygenase System, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Nojiri, Y. Ashikawa, H. Noguchi, J. -W. Nam, M. Urata, Z. Fujimoto, H. Uchimura, T. Terada, S. Nakamura, K. Shimizu, T. Yoshida, H. Habe, T. Omori
Structure Of The Terminal Oxygenase Component Of Angular Dioxygenase, Carbazole 1, 9A-Dioxygenase
J. Mol. Biol. V. 351 355 2005
PubMed-ID: 16005887  |  Reference-DOI: 10.1016/J.JMB.2005.05.059

(-) Compounds

Molecule 1 - TERMINAL OXYGENASE COMPONENT OF CARBAZOLE
    Chains: A
    EC Number: 1.14.12.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PEJ3AAC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: JANTHINOBACTERIUM SP. J3
    Organism Taxid: 213804
    Synonym: TERMINAL OXYGENASE COMPONENT OF CARBAZOLE 1,9A-DIOXYGENASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1FE21Ligand/IonFE (II) ION
2FES1Ligand/IonFE2/S2 (INORGANIC) CLUSTER
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1FE23Ligand/IonFE (II) ION
2FES3Ligand/IonFE2/S2 (INORGANIC) CLUSTER

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:183 , HIS A:187 , ASP A:333 , HOH A:631BINDING SITE FOR RESIDUE FE2 A 501
2AC2SOFTWARECYS A:69 , HIS A:71 , ARG A:72 , CYS A:90 , HIS A:93 , TRP A:95BINDING SITE FOR RESIDUE FES A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WW9)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Leu A:266 -Pro A:267
2Asn A:273 -Pro A:274
3Phe A:275 -Pro A:276

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WW9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WW9)

(-) Exons   (0, 0)

(no "Exon" information available for 1WW9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:389
 aligned with Q84II6_JANS3 | Q84II6 from UniProtKB/TrEMBL  Length:384

    Alignment length:389
                                                                                                                                                                                                                                                                                                                                                                                                                         384     
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380   |     
         Q84II6_JANS3     1 MANVDEAILKRVKGWAPYVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRIDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPPPLARDTPPNFLDDDMEILGKNQIIKSNWRLAVENGFDPSHIYIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGAYGEKIVANDISIWLPGVLKVNPFPNPDMMQFEWYVPIDENTHYYFQTLGKPCANDEERKKYEQEFESKWKPMALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQTQAHVSG-----   -
               SCOP domains d1ww9a1 A:1-142 Terminal oxygenase component of carbazole CarAa                                                                               d1ww9a2 A:143-384 Terminal oxygenase component of carbazole CarAa                                                                                                                                                                                 ----- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh..hhhhhhh......eeeeeee.hhh.....eeeee..eeeeeeee..eeeeee........hhhhhh......eee.....eeee.....eeee..................eeee..eeeeee......hhhhhh........eeeeeeeeee..hhhhhhhhhhhhhhhhhhh.hhhhhhh..ee..eee....hhh.eeee........eeeehhhhhheee.eeee..eeeee.ee.......eeeee...eeeee.......eeeeeeeeee..eeeeeeeeeee..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ww9 A   1 MANVDEAILKRVKGWAPYVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRIDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPPPLARDTPPNFLDDDMEILGKNQIIKSNWRLAVENGFDPSHIYIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGAYGEKIVANDISIWLPGVLKVNPFPNPDMMQFEWYVPIDENTHYYFQTLGKPCANDEERKKYEQEFESKWKPMALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQTQAHVSGLEHHH 389
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WW9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1WW9)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q84II6_JANS3 | Q84II6)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  1ww9
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  Q84II6_JANS3 | Q84II6
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  1.14.12.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q84II6_JANS3 | Q84II6: 2de5 2de6 2de7 3vmg 3vmh 3vmi 4nb8 4nb9 4nba 4nbb 4nbc 4nbd 4nbe 4nbf 4nbg 4nbh

(-) Related Entries Specified in the PDB File

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